LOCUS       JN809820                2747 bp    DNA     circular VRL 15-JAN-2012
DEFINITION  Ageratum yellow vein virus isolate AFSP6b segment A, complete
            sequence.
ACCESSION   JN809820
VERSION     JN809820.1
KEYWORDS    .
SOURCE      Ageratum yellow vein virus
  ORGANISM  Ageratum yellow vein virus
            Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Shih,S.L., Tsai,W.S., Lee,L.M. and Kenyon,L.
  TITLE     First report and molecular characterization of begomoviruses
            infecting Sauropus androgynus in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Shih,S.L., Tsai,W.S., Lee,L.M. and Kenyon,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-2011) Virology, AVRDC-The World Vegetable
            Center, PO Box 42, Shanhua, Republic of China
FEATURES             Location/Qualifiers
     source          1..2747
                     /mol_type="genomic DNA"
                     /country="Thailand: Kamphaengsaen"
                     /segment="A"
                     /collection_date="2010"
                     /host="Sauropus androgynus"
                     /db_xref="taxon:44560"
                     /isolate="AFSP6b"
                     /organism="Ageratum yellow vein virus"
     gene            134..484
                     /gene="V2"
     CDS             134..484
                     /codon_start=1
                     /protein_id="AEX37955.1"
                     /gene="V2"
                     /translation="MWDPLVNEFPETVHGLRCMLAVKYCQLIEQTYAPDTVGYDLIRD
                     LISVIRARNYVEASRRYSHFNSRLEGTTSSELRHPRDEPCCCPHCPRHQQKKDMDQQA
                     HVSQAQILQSVQKP"
                     /product="pre-coat protein"
     gene            294..1067
                     /gene="V1"
     CDS             294..1067
                     /codon_start=1
                     /protein_id="AEX37952.1"
                     /gene="V1"
                     /translation="MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNKKRI
                     WTNRPMYRKPRFYRVYKSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGL
                     THRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVIFYLVRDRRPYGSAMDFGQVFNMY
                     DNEPSTATIKNDLRDRYQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAA
                     KYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
                     /product="coat protein"
     gene            complement(1064..1468)
                     /gene="C3"
     CDS             complement(1064..1468)
                     /codon_start=1
                     /protein_id="AEX37954.1"
                     /gene="C3"
                     /translation="MDSRTGELLTATQCESGVYIWTIKNPLYFKITKHHERPFNTNHD
                     IITIQIQFNNNLRKALGIHQCFLNFQIWTRLQPQTWRFLRVFRVQCMKYLDNMGVISI
                     NNVIRACDHVLWDVLEKTEYVTQSNIIKFNLY"
                     /product="replication enhancement protein"
     gene            complement(1209..1616)
                     /gene="C2"
     CDS             complement(1209..1616)
                     /codon_start=1
                     /protein_id="AEX37953.1"
                     /gene="C2"
                     /translation="MRNSSPSRSHCTQVPIKVQHRIAKRQPVRRRRVDLTCGCSYYFG
                     IDCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTVQ
                     QQPEESVGNTPVFSELPDLDSLTTSDLAFLKSI"
                     /product="transcriptional activation protein"
     gene            complement(1516..2604)
                     /gene="C1"
     CDS             complement(1516..2604)
                     /codon_start=1
                     /protein_id="AEX37951.1"
                     /gene="C1"
                     /translation="MPRTHQFQVKAKNIFLTYPKCPIPKEQMLELLKNISCPSDKLFI
                     RISQEKHQDGSLHIHALIQFKGKCQFRNPRHFDVTHPNSSTQFHPNFQGAKSSSDVKS
                     YIEKDGDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIF
                     QYHNLKCNLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENIRDAAARPWRPISIV
                     IEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMG
                     AQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWAIKNAEFI
                     TITEPLYSGTNQSATQNRQETTSSQAES"
                     /product="replication-associated protein"
     gene            complement(2190..2447)
                     /gene="C4"
     CDS             complement(2190..2447)
                     /codon_start=1
                     /protein_id="AEX37956.1"
                     /gene="C4"
                     /translation="MGLCISTRSSNSKVNASSETPDISMSLTLIAPPNSTQTSRELSP
                     APMSSPTSRRTVITSTGVSFRSMDDLLEEVNRQLMMQQRRP"
                     /product="C4 protein"
ORIGIN      
        1 accggatggc cgcgattttt tttaaagtgg tcccaccact aacaaatgtc ccccaatcag
       61 aacgctctct caaagcttaa ttgttttgtg gtcccttatt taaacttgct cagcaagtag
      121 ttctccccgc actatgtggg atccattagt aaacgagttt cccgaaactg ttcacggtct
      181 taggtgtatg cttgccgtaa aatattgtca gttaatcgaa cagacatacg ctccagatac
      241 ggttggttac gatcttatac gagatttaat ttcagtaatt cgtgctcgca attatgtcga
      301 agcgtcccgc cgatatagtc atttcaactc ccgcctcgaa ggtacgacgt cgtctgaact
      361 tcgacacccc cgtgatgagc cgtgctgctg cccccactgt cctcgtcacc aacaaaaaaa
      421 ggatatggac caacaggccc atgtatcgca agcccagatt ctacagagtg tacaaaagcc
      481 ctgatgtgcc caaaggttgt gaaggtccat gtaaggtcca atcatatgaa cagaggcacg
      541 acatatccca tgttggtaaa gtattatgtg ttagtgatgt cactcgtggt agtgggctta
      601 cccatcgtgt tggtaagaga ttctgtgtga agtccgttta tgtattgggt aagatatgga
      661 tggatgaaaa tatcaaaact aagaaccata cgaacactgt gattttttat cttgttcgtg
      721 atagaaggcc ctatggttct gctatggatt ttggtcaggt gtttaacatg tatgataatg
      781 agcccagtac tgctacaatc aagaatgatc ttcgagatcg ttatcaagtg ttaaggaaat
      841 tcactgcaac agtcacaggt ggtcaatatg cttctaagga gcaggcgttg gttaggaaat
      901 ttatgaagat taataattat gtagtttata atcatcaaga ggctgctaag tatgacaatc
      961 atactgagaa tgccttgtta ttgtatatgg cttgtactca tgccagtaat ccagtgtatg
     1021 ctactttgaa gatcagaatc tatttttatg attctgttca gaattaataa agattgaatt
     1081 ttattatatt agattgtgtt acatattctg ttttttccaa tacatcccat aatacatgat
     1141 cacatgctct aattacattg ttaatactaa ttacacccat attatctaaa tatttcatac
     1201 attgaaccct aaatactctt aagaaacgcc aagtctgagg ttgtaagcga gtccagatct
     1261 ggaagttcag aaaacactgg tgtattccca acgctttcct caggttgttg ttgaactgta
     1321 tttggatcgt tatgatgtcg tggttggtgt tgaatggtct ctcgtggtgc ttggttatct
     1381 tgaaatatag gggatttttg atcgtccaga tatacacgcc actctcgcat tgagttgcag
     1441 tgagtaattc ccctgtgcga gaatccatga ttggcgcagt ctatgccgaa gtagtatgag
     1501 cacccgcacg ttagatcaac tctccgcctg cgaactggtt gtctcttggc gattctgtgt
     1561 tgcactttga ttggtacctg agtacaatgg ctccgtgatg gtgatgaatt ccgcattctt
     1621 tattgcccag tcttttaatg ctgaattctt ttcctcgtcc aagtactctt tatatgatga
     1681 tgttggccct ggattgcaaa ggaagatagt tgggattcca cctttaattt gaattggttt
     1741 cccgtacttt gtgttgcttt gccagtccct ttgggccccc atgaattctt taaagtgttt
     1801 tagatagtgg gggtctacgt catcaatgac gttgtaccag gcatcattac tgtacacctt
     1861 tggactcaag tcaaggtgac cgcacagata attatgtgga cctaaggacc tggcccacat
     1921 ggtctttcct gtcctacttt ctccctcaat gactatactt atgggcctcc aaggccgcgc
     1981 agcggcatcc cttatattct cggaaaccca ttcttcaagt tcttctggaa cttgatcgaa
     2041 agaagaagat aaaaaaggag aaacataaac ctccaacgga ggtgtaaaaa tcctatctaa
     2101 attacatttt aaattatgat attgaaaaat aaaatctttt gggagttttt cccttattat
     2161 tgctaacgcc gcttcagccg aacctgcatt tagggcctcc gctgctgcat cattagctgt
     2221 ctgttgacct cctctagcag atcgtccatc gatctgaaac tgaccccagt cgatgtaatc
     2281 accgtccttc tcgatgtagg acttgacatc ggagctggac ttagctccct ggaagtttgg
     2341 gtggaattgg gtggagctat tagggtgagt gacatcgaaa tgtctggggt ttctgaactg
     2401 gcatttacct ttgaattgga tgagcgcgtg gatatgcaga gacccatctt ggtgtttttc
     2461 ttgtgatatt ctgataaata atttgtcaga tggacatgaa atgtttttaa ggagttcgag
     2521 catttgctct tttggtattg ggcattttgg gtaagtgaga aagatatttt tggccttaac
     2581 ttggaattgg tgtgtacgtg gcatattgaa tcgggtgctc tacaaacttc ataggaatgg
     2641 ggtgctttgg gtgcctattt atatcgagct cccaaatggc aattttgtaa ttacgaaaag
     2701 taatttaaaa tccttacgct cccaaaagcg gccatccgta taatatt
//