LOCUS GQ927706 8228 bp RNA linear VRL 18-MAY-2012 DEFINITION Aichi virus strain D/VI2321/2004 polyprotein gene, complete cds. ACCESSION GQ927706 VERSION GQ927706.2 KEYWORDS . SOURCE Aichi virus 1 ORGANISM Aichi virus 1 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Kobuvirus. REFERENCE 1 (bases 1 to 8228) AUTHORS Drexler,J.F., Baumgarte,S., de Souza Luna,L.K., Eschbach-Bludau,M., Lukashev,A.N. and Drosten,C. TITLE Aichi virus shedding in high concentrations in patients with acute diarrheac JOURNAL Emerging Infect. Dis. 17 (8), 1544-1548 (2011) PUBMED 21801647 REFERENCE 2 (bases 1 to 8228) AUTHORS Lukashev,A.N., Drexler,J.F., Belalov,I.S., Eschbach-Bludau,M., Baumgarte,S. and Drosten,C. TITLE Genetic variation and recombination in Aichi virus JOURNAL J. Gen. Virol. 93 (PT 6), 1226-1235 (2012) PUBMED 22377582 REFERENCE 3 (bases 1 to 8228) AUTHORS Drexler,J.F., de Souza Luna,L.K., Baumgarte,S., Eschbach-Bludau,M. and Drosten,C. TITLE Direct Submission JOURNAL Submitted (21-SEP-2009) Institute of Virology, University of Bonn Medical Centre, Sigmund Freud-Str. 25, Bonn 53127, Germany REFERENCE 4 (bases 1 to 8228) AUTHORS Drexler,J.F., de Souza Luna,L.K., Baumgarte,S., Eschbach-Bludau,M. and Drosten,C. TITLE Direct Submission JOURNAL Submitted (23-FEB-2012) Institute of Virology, University of Bonn Medical Centre, Sigmund Freud-Str. 25, Bonn 53127, Germany REMARK Sequence update by submitter COMMENT On Feb 23, 2012 this sequence version replaced gi:307557903. FEATURES Location/Qualifiers source 1..8228 /mol_type="genomic RNA" /country="Germany" /isolation_source="stool" /collection_date="2004" /host="Homo sapiens" /db_xref="taxon:1313215" /strain="D/VI2321/2004" /organism="Aichi virus 1" CDS 665..7966 /codon_start=1 /protein_id="ADN52306.2" /translation="MAATRVSRSVLAAVAHSAAHRTYHTVLDCYDRLYLSTNPHLSYP LPKNSSFPCPFCQYDEQNEVLSPESLCGEGAEPCWKCSQDKPRRKYSTVPPEEWLYDS DVQSWFYPETYYSDLQQKFFDKLALLSLPGAYQAKTPEERALAGALTQLLNFPSTPQL SIPTANLQRQGNSVTNIYGNGNNVTTDVGANGWAPTVSTGLGDGPVSASADSLPGRSG GASSEKTHSVSGSSNKVGSRFSKWWEPAAARALERATDSAIDGIDAAGKAASKAITRK LDRPAAPSSTANPQPSLIALNPSATQSGNASILTGSTAPSFLAYPTATPVPLPNPDEP SQPGPSGDRTWLLDTVTWSQEFTRGWNIAGPNGMQWSGLENPLFPVSTDTNWTSSTNA PTAYPLPFSFVRAYPDSPWAAMYNTHSMWNCGWRVQVTVNGSQFHAGALILYMVPEAT TESIQTARNNAGFVFPYVILNLYESNTATIEVPYISPTPNTSSGLHAPWTFYLQVLSP LNPPPSLPTSLSCSIYVTPVDSSFHGLRYLATQHWKTRAVPGAGTFGSAVAGQELPLC GVRAYYPPNSYIPAQVHDWLEFAHRPGLMATVPWTMADEPAERLGIFPVSPSAIAGTG APISYVISLFSQWRGELAAHLLFTGSAQHYGRLVVCYTPAAPQPPTTMQEAMRGTYTV WDVNAASTLEFTIPFISNSYWKTVDVNNPDALLSTTGYVSIWVQNPLVGPHTAPASAL VQAFISAGESFNVRLMQNPALSSQTLTEDLDAPQDTGNIENGAADNTPQPRTTFDYTE NPLPPDTKLENFFSFYRLLPMGNNGAPSLSFPANEGTIIPLNPINWLQGADVSGIASM LSCFTYIAADLRITLRFANPNDNPATMLVAFAPPGATIPLHPTRQMLSNFYMAEVPVS AATSTMVSFSIPYTSPLSAIPTSYFGWEDWSGTNFGQLSSGSWGNLMLIPSLAVDSAI PFDFQLSCWVAFGNFKAWVPRPPPPLPPLPTPTTNAERAVAVIKQGAAAATPDVDPDD RVYIVRAQRPTYVHWAIRKVSPDGSAQQISLSRSGIRALVALEPPEGELYLEVLPSHW TLAELQLGNGWEYSATNNCTHFVSSITGESLPNTGFSLALGIGALTAIAASAAVAVKA LKGIRRQGLLTLSADTETNQTLSKITESVNQAAQVVSQFDLSGPANSVSLAASDIREA AHKVASSLNGFTDVIADIKDSLFTRVSDAVETGVATFLTWLVKLFGYLLVLFGSPTPM SISGLLVIICADLAPHAREFFTASENVLSSLYYWIATKLGLSVTPQECERATLEPQGL KDFNDGALAMRNVEWIGETAWKWAHRLLDWIRGKAKTDPQAKLADVHDEIMLHYSDSI LALGSEKLPIDHITNSISRCRELVSIAQEARSGPHSSFLNQSIKNYTLAISQHRKRQT GPRPEPVVVYLYGPPGTGKSLLASLLAQTLSQRLSGTPDDVYSPSSASCEYFDGYTGQ AVHFIDDIGQDPEGRDWANFPNLVSSAPFIVPMASLEEKGTHYTSKVIVVTSNFHEPN ERAARSMGALRRRVHLRINVTSNGVPFDPTNALNPIPGTQSKYFTAQTPLTLFQSNTV RLDRDSIWTPSFSNMDELVDAIVTRLDRSTGVSNSLASLIKRQGNRVIDAEPREIPLE YADDLLEAMAHHRPVPCSLGLSQAIANNTPLQQISDTFWKYRKPIFTCTTFLAVLGFL CSVIPLARSLWKSRQDTPQETQAAYSAIPHQKSKPKSQKPVPTRHIQRQGISPAVPGI SNNVVHVESGNGLNKNVMSGFYIFSRFLLIPTHLREPHHTTLMVGTDTYDWATLQTQE LGEITIVHTPTSRQYKDMRRFIGAHPYPTGILVSQFKAAPLYVRISDNRILDLDFPGV VVCKQAYGYRAATFEGLCGSPLVTDDPSGVKILGLHVAGVAGTSGFSAPIHPILGQIT QFATTQQSLLVPTAEIRPGVNVNRMSRLHPSPAYGAFPIKKQPAPLKRNDRRLQEGVD LDTQLFLKHGKGDVTEPWPGLEAAADLYFSTFPSSLPVLTQEQAIHGTPNMEGLDMGQ AAGYPWNTLGRSRRSLFDETEPGVFVPKPELQAEINQTLEDPDYVYSTFLKDELRPTA KVEQGLTRIVEAAPIHAIVAGRMLLGGLIDYMQGRPGEHGSAVGCNPDVHWTSFFYAF SEFSQVYDLDYKCFDATLPSAVFSLVAEHLTRITGDPRVGRYIHSIRHSHHIYGNQMY DMIGGNPSGCVATSILNTIINNICVLSALIQHPDFSPSRFHILAYGDDVIYATEPPIH PSFLREFYQKHTPLVVTPANKGQDFPPTSTIYEVTFLKRWFVPDDVRPIYIHPVMDPD TYEQSVMWLRDGDFQDVVTSLCHLAFHSGPKTYAAWCTKVREQCLKSGFAPNFLPYSY LQLRWLNLLAA" /product="polyprotein" ORIGIN 1 gcttcttcgg aacctgttcg gaggaattaa acgggcaccc atacaccccc accccctttt 61 ctgcaactta agtatgtgtg ctcgtaatct tgactcccac ggaatggatc gatccgctgg 121 agaacaaact gctagatcca catcctccct tcccctggga ggaccccggt cctcccacat 181 cctcccccca gcctgacgta tcacaggctg tgtgaagtcc ccgcgaaagc tgctcacgtg 241 gcaattgtgg gtcccccctt catcaagaca ccaggtcttt cctccttaag gctagccccg 301 atgtgtgaat tcacattggg caactagtgg tgtcactgtg cgctcccaat ctcggccgcg 361 gagtgctgtt ccccaagcca aacccctggc ccttcactat gtgcctggca agcatatctg 421 agaaggtgtt ccgctgtggc tgccagcctg gtaacaggtg ccccagtgtg cgtaaccttc 481 ttccgtctcc ggacggtagt gattggttaa gatttggtgt aaggttcatg tgccaacgcc 541 ctgtgcggga tgaaacctct actgccctag gaatgccagg caggtacccc accttcgggt 601 gggatctgag cctgggctaa ttgtctacgg gtagtttcat ttccaattct tttatgtcgg 661 agtcatggct gcaacacggg tttcacgatc tgtgctcgct gctgtggctc actctgctgc 721 ccaccgcacc taccacactg tccttgactg ctatgatagg ctctacctct ctaccaaccc 781 ccacctctca tacccccttc ccaaaaactc ctccttcccc tgtcccttct gccagtatga 841 cgagcagaac gaagtcctct ccccagagtc tctctgtggc gagggggccg aaccctgctg 901 gaagtgctcg caggacaaac cccgccgcaa atacagcact gtccctcctg aagaatggct 961 ctatgattct gatgtccagt cctggttcta tcctgaaaca tactattctg acctccaaca 1021 aaagttcttt gacaaattgg ctctcctctc tctcccaggt gcctaccaag caaagacccc 1081 ggaagagcgt gcccttgctg gcgcgctcac ccaacttctc aacttcccct ccacacctca 1141 actttccatt cccactgcca atctccaacg gcaaggcaac tcggtcacca acatctacgg 1201 caatggcaac aacgtcacca ctgacgttgg tgccaacggt tgggccccca cggtctcaac 1261 tggcctaggt gatggtcccg tttccgcctc tgccgactcc cttcctgggc gatccggagg 1321 tgcctcctcc gagaaaaccc actccgtctc cggctcttcc aacaaagtcg gatcccgctt 1381 ctccaagtgg tgggaaccag ccgccgcgcg tgctctggag cgcgccaccg actcagccat 1441 cgatggaatc gatgctgctg ggaaggccgc ctccaaggcg atcacgcgaa agctggaccg 1501 tcccgccgct ccttcctcca ccgccaaccc ccaaccctct ctcatcgctc tcaacccatc 1561 tgccacccaa tccggtaacg cctccatcct caccggatcc actgccccct ccttcctcgc 1621 ttaccccacc gccactcctg tcccccttcc aaacccggac gaaccctccc aacctggccc 1681 atccggcgac cgcacctggt tgctggatac agtcacctgg tcacaggaat tcacccgggg 1741 ttggaacatt gcaggcccta acggcatgca gtggtctggc ctggaaaacc ccctcttccc 1801 cgtctccaca gacaccaact ggacctcctc cacaaacgct cccaccgcct accccctacc 1861 tttctccttc gtgcgtgcgt acccagactc cccctgggct gccatgtaca acacccactc 1921 catgtggaac tgcggttggc gcgtccaggt gaccgtcaac ggctcacaat tccacgctgg 1981 agccctcatc ctctatatgg tccccgaagc caccaccgag tcgatccaaa cggctcggaa 2041 caacgctggc ttcgtcttcc cctatgtcat cctcaacctc tacgagagca acactgctac 2101 catagaggtc ccctacatct cacccacccc caacacttcc agtggactcc acgccccgtg 2161 gacgttctac ctccaggtcc tctccccctt gaaccccccc ccctcactcc ccacttctct 2221 atcctgctcc atctacgtca cacctgttga ctcctccttc cacggtctcc gctacctggc 2281 tacacagcac tggaagaccc gcgccgtccc cggtgcgggt actttcggtt cagctgtcgc 2341 tggccaggag cttccactct gtggagtccg agcttactac ccaccaaact cctacatccc 2401 agcccaagtc cacgattggt tggaattcgc tcaccgtccc ggtctcatgg ccaccgtgcc 2461 gtggaccatg gcggacgaac cagctgaacg ccttggtatc tttcctgtct ctcccagtgc 2521 catcgctggt actggagccc ccatctctta cgtcatctct cttttctccc agtggcgcgg 2581 tgaactcgcc gcccacctcc tcttcactgg ttctgctcag cactacggcc gtctggtcgt 2641 gtgctacacc cccgctgctc cccagccacc caccaccatg caggaggcaa tgcgcggaac 2701 atacacagta tgggacgtca atgccgcctc aaccctcgaa ttcaccattc ccttcatttc 2761 caactcctac tggaagacag tggacgtcaa caaccccgac gctctattgt caaccaccgg 2821 ctatgtctcc atctgggtgc aaaacccact agtcggaccc cacaccgccc cagcgtcagc 2881 cctcgttcag gcattcatct ccgcgggtga atccttcaac gtccggttga tgcaaaaccc 2941 cgccctctcc tcccaaactc tcaccgagga tctcgatgcg ccacaagaca ccggcaacat 3001 cgagaatggt gccgcggaca acaccccaca accgcgcacc actttcgact acaccgagaa 3061 tcctctgccc cctgacacca aactggaaaa cttcttctcc ttctaccgct tgttgcccat 3121 gggcaacaac ggtgctccct cactttcctt ccccgccaac gaaggcacaa tcatccccct 3181 taaccccatc aattggcttc agggagccga cgtgtccgga atcgcgtcga tgctatcgtg 3241 cttcacatac atcgccgcgg atctccgcat cacgctcagg ttcgccaatc caaatgacaa 3301 ccctgccacc atgctcgtcg ccttcgcccc acctggcgca acaatccctc tccaccccac 3361 acgccagatg ctctcaaact tctacatggc ggaggttccg gtctcagccg ccacctccac 3421 catggtctcc ttctccatcc cctacacctc ccctctttct gccatcccca cctcgtactt 3481 cggatgggag gactggtcag gcaccaactt tggccagctc tcctccggat catggggcaa 3541 cctcatgctc atcccctccc tcgctgtcga ttctgccatt cccttcgact tccagctctc 3601 ttgctgggtc gccttcggca acttcaaagc ctgggtcccc cgccctcccc ctcccctccc 3661 gcccctcccc accccaacca ccaacgcgga gcgcgcagtg gccgtcatca aacaaggtgc 3721 cgccgccgcc acgccggacg tggaccccga cgaccgggtc tacatcgtgc gtgcgcagcg 3781 ccccacctac gtccactggg ccatccgcaa ggtctcccca gacggcagtg ctcaacagat 3841 ctcgctgtcc cgcagtggga tccgggcact ggtcgccctc gaaccccccg agggcgaact 3901 ctacctcgaa gtcctcccct cacattggac cctcgctgaa ctccaactcg gcaacgggtg 3961 ggagtacagt gccaccaaca actgtaccca cttcgtcagt tccatcactg gcgaatccct 4021 cccaaatact ggcttctccc ttgctctcgg tatcggcgcc ctcaccgcca tcgcagcttc 4081 ggctgctgtt gccgtgaaag cgctcaaagg catcaggcgc cagggcctcc tcaccctctc 4141 tgccgatact gaaaccaacc agaccctaag caaaatcact gaatccgtca accaagcagc 4201 tcaggttgtc tcacagttcg acctgagcgg ccctgcaaat tctgtctccc ttgctgcctc 4261 tgacattcgg gaggccgccc acaaagtggc ctcctccctc aatggcttca ccgacgtcat 4321 cgccgacatc aaggattccc tcttcacccg ggtttccgat gccgtcgaga ccggcgttgc 4381 cactttcctc acctggctcg tcaaactctt tggctacctc ttagtcctct ttggatcccc 4441 cacccccatg tctatctctg gcctccttgt aatcatctgt gctgatcttg ctccccatgc 4501 ccgcgagttc ttcactgctt ctgaaaatgt cctctcctct ctctactact ggattgccac 4561 aaaattaggc ctgtccgtca caccccaaga gtgtgaacgg gcgacccttg aaccccaagg 4621 gctcaaagac ttcaacgacg gcgcactcgc aatgcgcaac gtcgagtgga ttggtgagac 4681 tgcctggaaa tgggcccacc gcctccttga ctggatccgc ggtaaggcca aaaccgaccc 4741 ccaggcaaag ctcgccgacg tccacgatga aatcatgctc cactactcag actccatact 4801 ggctctcgga tctgagaaac tcccaattga ccacatcaca aattccatct cccgctgccg 4861 ggaactggtc tccatcgccc aggaggctag gtccggcccc cactcttcct tcctcaacca 4921 atccatcaaa aactacaccc ttgccatttc ccaacaccgc aaacgccaga ccggtccacg 4981 accggaaccc gtggtggtct acctctacgg accacccggc actggcaagt cccttctcgc 5041 ctccctcctt gctcaaaccc tctcccaacg cctctctggc acccctgacg acgtctattc 5101 cccctcctcc gcttcctgcg aatacttcga cgggtacacc ggccaagccg tgcacttcat 5161 cgatgacatc ggacaggatc cggaggggcg ggactgggca aacttcccca acctcgtctc 5221 ctctgctccc ttcatcgtcc ccatggcctc cctcgaggag aaaggcaccc actacacctc 5281 caaggtcatc gtggtcactt ccaacttcca cgagcctaac gagcgcgctg cgcgctcgat 5341 gggtgccctc agacgccgcg tccacctgcg gatcaacgtc acctcaaacg gagttccatt 5401 tgaccccacc aatgctctca accccatccc tggaacccaa tccaaatact tcactgccca 5461 aacccctctc actctcttcc agtccaacac ggttcgcctg gaccgtgact ccatctggac 5521 cccctccttt tccaacatgg acgaactggt cgacgcgatc gtgacccgtc tcgaccgctc 5581 taccggtgtg tccaactccc tcgcttctct catcaaacgc cagggcaacc gggtcatcga 5641 cgcggaaccc agggaaatcc ccctggaata cgccgacgat ctcctggaag ctatggcaca 5701 ccaccgcccc gtcccttgct ccctcggcct ctcccaggcc atcgccaaca atacccccct 5761 ccaacaaatc tctgacacct tctggaaata ccgcaaaccc atcttcactt gcaccacttt 5821 ccttgctgtc ctcggctttc tctgctctgt catccctctc gcccgctccc tgtggaagtc 5881 ccgccaagac acgccacagg agacgcaggc cgcctactct gccatcccac accaaaagtc 5941 caaacccaag tcccaaaaac ccgtccccac ccgccacatc cagcggcagg gcatctcccc 6001 tgccgtccca ggcatctcca acaatgtcgt ccacgttgag tccggcaacg gtctcaacaa 6061 gaacgtcatg tctggctttt acatcttctc ccgtttcctt ctcatcccca cccacctccg 6121 tgaaccccac cacaccaccc tcatggtggg caccgatacc tacgactggg ccaccctcca 6181 gacgcaggaa ctcggtgaaa tcaccattgt ccatactcca acctcccgcc agtacaagga 6241 catgcggcgc ttcatcggcg cccatcccta ccctactggt atcctggttt cccaattcaa 6301 agcagctccc ctctacgtcc gcatctccga caaccggatt ctggaccttg acttccccgg 6361 agttgtcgtc tgcaagcagg catacggtta ccgcgccgcg accttcgaag gtctgtgcgg 6421 ttccccgctt gttacagacg atccctctgg cgtcaagatt ctgggactcc acgttgctgg 6481 ggttgcgggc acgagtgggt tctctgcccc catccacccc atcctcggcc aaatcaccca 6541 atttgccacc acccaacaat ccctcctcgt ccccaccgct gaaatccggc ctggcgtcaa 6601 cgtcaaccgg atgtcccgcc tgcacccctc ccccgcctac ggtgccttcc ccatcaagaa 6661 acaacctgcc cccctcaagc ggaacgaccg ccgtttgcag gagggtgttg atcttgacac 6721 ccagcttttc ctcaaacacg gcaaaggcga cgttaccgag ccctggcccg gtctcgaagc 6781 tgctgccgac ctctacttct ccaccttccc ctcttccctt cctgtcctga cccaggagca 6841 ggccatccat ggcacaccaa acatggaggg cctggacatg ggacaggctg caggataccc 6901 ctggaacacc cttgggcgct cccggcgatc tctcttcgac gagactgagc cgggagtgtt 6961 cgtccccaaa cccgaactcc aagctgaaat caaccagaca cttgaagacc cggattacgt 7021 gtactccacc ttcctcaagg atgaactcag accaacagcc aaggttgaac agggactgac 7081 cagaatcgtc gaagctgctc cgatccacgc tattgtcgct ggccggatgc tcctcggtgg 7141 tctcatagac tacatgcagg gacgtcccgg cgagcacggt agtgctgtcg ggtgcaaccc 7201 agacgtccac tggacttcct tcttctacgc cttcagtgag ttctctcagg tatacgatct 7261 ggactacaag tgttttgatg caactcttcc ctctgctgtc ttctctcttg tcgctgaaca 7321 cctcacccgc atcaccggag atccccgcgt cggtcgctac atccactcca tccgccattc 7381 acaccacatc tatggcaacc agatgtacga catgatcggg ggtaacccgt ccggttgtgt 7441 ggccacctct atcctcaaca ccatcatcaa caacatctgt gtcctctctg ccctcatcca 7501 gcaccctgat ttctctccct cccgtttcca catcctcgca tatggtgacg atgtcatcta 7561 tgcgacggaa ccccccatcc acccttcctt cctgcgggag ttctaccaga aacacacccc 7621 cctggtagtg acccccgcaa acaaagggca ggacttcccc cccacgtcca cgatctatga 7681 agtcaccttc ctcaaacgct ggttcgttcc ggacgatgtt aggcccatct acatccaccc 7741 tgtgatggac cctgacacgt acgaacaatc ggtgatgtgg ctgcgtgatg gagatttcca 7801 ggacgtggtg acctcccttt gtcaccttgc cttccacagc ggacccaaga cgtacgctgc 7861 ctggtgcacg aaagtgcgcg agcagtgtct caagtctggg ttcgccccca acttccttcc 7921 ttactcctac ctccaactcc gctggcttaa cctgctagca gcctgatagt tagggaacac 7981 agtgcttcgg cacgcttagt tagttagaac cctctgccca ctcctccatg gtgatataaa 8041 gaccacccac acttttcggg tgagccccta agccatggtt gtactgcact atcaacctaa 8101 gacggtcctt ctccgggtcg cactttcccc ctggtgccgc gcctcccgcg ggagctgcac 8161 ccgcggacca gggtagtctt tgaacttttc taactgttct tacaaaaaaa aaaaaaaaaa 8221 aaaaaaaa //