LOCUS GQ927705 8242 bp RNA linear VRL 18-MAY-2012 DEFINITION Aichi virus strain D/VI2359/2004 polyprotein gene, complete cds. ACCESSION GQ927705 VERSION GQ927705.2 KEYWORDS . SOURCE Aichi virus 1 ORGANISM Aichi virus 1 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Kobuvirus. REFERENCE 1 (bases 1 to 8242) AUTHORS Drexler,J.F., Baumgarte,S., de Souza Luna,L.K., Eschbach-Bludau,M., Lukashev,A.N. and Drosten,C. TITLE Aichi virus shedding in high concentrations in patients with acute diarrheac JOURNAL Emerging Infect. Dis. 17 (8), 1544-1548 (2011) PUBMED 21801647 REFERENCE 2 (bases 1 to 8242) AUTHORS Lukashev,A.N., Drexler,J.F., Belalov,I.S., Eschbach-Bludau,M., Baumgarte,S. and Drosten,C. TITLE Genetic variation and recombination in Aichi virus JOURNAL J. Gen. Virol. 93 (PT 6), 1226-1235 (2012) PUBMED 22377582 REFERENCE 3 (bases 1 to 8242) AUTHORS Drexler,J.F., de Souza Luna,L.K., Baumgarte,S., Eschbach-Bludau,M. and Drosten,C. TITLE Direct Submission JOURNAL Submitted (21-SEP-2009) Institute of Virology, University of Bonn Medical Centre, Sigmund Freud-Str. 25, Bonn 53127, Germany REFERENCE 4 (bases 1 to 8242) AUTHORS Drexler,J.F., de Souza Luna,L.K., Baumgarte,S., Eschbach-Bludau,M. and Drosten,C. TITLE Direct Submission JOURNAL Submitted (23-FEB-2012) Institute of Virology, University of Bonn Medical Centre, Sigmund Freud-Str. 25, Bonn 53127, Germany REMARK Sequence update by submitter COMMENT On Feb 23, 2012 this sequence version replaced gi:307557901. FEATURES Location/Qualifiers source 1..8242 /mol_type="genomic RNA" /country="Germany" /isolation_source="stool" /collection_date="2004" /host="Homo sapiens" /db_xref="taxon:1313215" /strain="D/VI2359/2004" /organism="Aichi virus 1" CDS 678..7979 /codon_start=1 /protein_id="ADN52305.2" /translation="MAATRVSRSVLAAVAHSAAHRTYHTVLDCYDRLYLSTNPHLSYP LPKNSSFPCPFCQYDEQNEVLSPESLCGEGAEPCWKCSQDKPRRKYNTVPPEEWLYDS DVQSWFYPETYYSDLQQKFFDKLALLSLPGAYQAKTPEERALAGALTQLLNFPSTPQL SIPTANLQRQGNSVTNIYGNGNNVTTDVGANGWAPTVSTGLGDGPVSASADSLPGRSG GASSEKTHSVSGSSNKVGSRFSKWWEPAAARALERATDSAIDGIDAAGKAASKAITRK LDRPAAPSSTANPQPSLIALNPSATQSGNASILTGSTAPSFLAYPTATPVPLPNPDEP SQPGPSGDRTWLLDTVTWSQEFTRGWNIAGPNGMQWSGLENPLFPVSTDTNWTSSTNA PTAYPLPFSFVRAYPDSPWAAMYNTHSMWNCGWRVQVTVNGSQFHAGALILYMVPEAT TESIQTARNNAGFVFPYVILNLYESNTATIEVPYISPTPNTSSGLHAPWTFYLQVLSP LNPPPSLPTSLSCSIYVTPVDSSFHGLRYLATQHWKTRAVPGAGTFGSAVAGQELPLC GVRAYYPPNSYIPAQVHDWLEFAHRPGLMATVPWTMADEPAERLGIFPVSPSAIAGTG APISYVISLFSQWRGELAAHLLFTGSAQHYGRLVVCYTPAAPQPPTTMQEAMRGTYTV WDVNAASTLEFTIPFISNSYWKTVDVNNPDALLSTTGYVSIWVQNPLVGPHTAPASAL VQAFISAGESFNVRLMQNPALSSQTLTEDLDAPQDTGNIENGAADNTPQPRTTFDYTE NPLPPDTKLENFFSFYRLLPMGNNGAPSLSFPANEGTIIPLNPINWLQGADVSGIASM LSCFTYIAADLRITLRFANPNDNPATMLVAFAPPGATIPLHPTRQMLSNFYMAEVPVS AATSTMVSFSIPYTSPLSAIPTSYFGWEDWSGTNFGQLSSGSWGNLMLIPSLAVDSAI PFDFQLSCWVAFGNFKAWVPRPPPPLPPLPTPTTNAERAVAVIKQGAAAATPDVDPDD RVYIVRAQRPTYVHWAIRKVSPDGSAQQISLSRSGIRALVALEPPEGELYLEVLPSHW TLAELQLGNGWEYSATNNCTHFVSSITGESLPNTGFSLALGIGALTAIAASAAVAVKA LKGIRRQGLLTLSADTETNQTLSKITESVNQAAQVVSQFDLSGPANSVSLAASDIREA AHKVASSLNGFTDVIADIKDSLFTRVSDAVETGVATFLTWLVKLFGYLLVLFGSPTPM SISGLLVIICADLAPHAREFFTASENVLSSLYYWIATKLGLSVTPQECERATLEPQGL KDFNDGALAMRNVEWIGETAWKWAHRLLDWIRGKAKTDPQAKLADVHDEIMLHYSDSI LALGSEKLPIDHITNSISRCRELVSIAQEARSGPHSSFLNQSIKNYTLAISQHRKRQT GPRPEPVVVYLYGPPGTGKSLLASLLAQTLSQRLSGTPDDVYSPSSASCEYFDGYTGQ AVHFIDDIGQDPEGRDWANFPNLVSSAPFIVPMASLEEKGTHYTSKVIVVTSNFHEPN ERAARSMGALRRRVHLRINVTSNGVPFDPTNALNPIPGTQSKYFTAQTPLTLFQSNTV RLDRDSIWAPSFSNMDELVDAIVTRLNRSTGVSNSLASLIKRQGNRVIDAEPREIPLE YADDLLEAMAHHRPVPCSLGLSQAIANNTPLQQISDTFWKYRKPIFTCTTFLAVLGFL CSVIPLARSLWRSRQDTPQETQAAYSAIPHQKSKPKSQKPVPTRHIQRQGISPAVPGI SNNVVHVESGNGLNKNVMSGFYIFSRFLLIPTHLREPHHTTLMVGTDTYDWAALQTQE LGEITIVHTPTSRQYKDMRRFIGAHPYPTGILVSQFKAAPLYVRISDNRILDLDFPGV VVCKQAYGYRAATFEGLCGSPLVTDDPSGVKILGLHVAGVAGTSGFSAPIHPILGQIT QFATTQQSLLVPTAEIRPGVNVNRMSRLHPSPAYGAFPIKKQPAPLKRNDRRLQEGVD LDTQLFLKHGKGDVTEPWPGLEAAADLYFSTFPSSLPVLTQEQAIHGTPNMEGLDMGQ AAGYPWNTLGRSRRSLFDETEPGVFVPKPELQAEINQTLEDPDYVYSTFLKDELRPTA KVEQGLTRIVEAAPIHAIVAGRMLLGGLIDYMQGRPGEHGSAVGCNPDVHWTSFFYAF SEFSQVYDLDYKCFDATLPSAVFSLVAEHLTRITGDPRVGRYIHSIRHSHHIYGNQMY DMIGGNPSGCVATSILNTIINNICVLSALIQHPDFSPSRFHILAYGDDVIYATEPPIH PSFLREFYQKHTPLVVTPANKGQDFPPTSTIYEVTFLKRWFVPDDVRPIYIHPVMDPD TYEQSVMWLRDGDFQDVVTSLCHLAFHSGPKTYAAWCMKVREQCLKSGFAPNFLPYSY LQLRWLNLLAA" /product="polyprotein" ORIGIN 1 gttactccat tcagcttctt cggaacctgt tcggaggaat taaacgggca cccatacacc 61 cccaccccct tttctgcaac ttaagtatgt gtgctcgtaa tcttgactcc cacggaatgg 121 atcgatccgc tggagaacaa actgctagat ccacatcctc ccttcccctg ggaggacccc 181 ggtcctccca catcctcccc ccagcctgac gtatcacagg ctgtgtgaag tccccgcgaa 241 agctgctcac gtggcaattg tgggtccccc cttcatcaag acaccaggtc tttcctcctt 301 aaggctagcc ccgatgtgtg aattcacatt gggcaactag tggtgtcact gtgcgctccc 361 aatctcggcc gcggagtgct gttccccaag ccaaacccct ggcccttcac tatgtgcctg 421 gcaagcatat ctgagaaggt gttccgctgt ggctgccagc ctggtaacag gtgccccagt 481 gtgcgtaacc ttcttccgtc tccggacggt agtgattggt taagatttgg tgtaaggttc 541 atgtgccaac gccctgtgcg ggatgaaacc tctactgccc taggaatgcc aggcaggtac 601 cccaccttcg ggtgggatct gagcctgggc taattgtcta cgggtagttc catttccaat 661 tcttttatgt cggagtcatg gctgcaacac gggtttcacg atctgtgctc gctgctgtgg 721 ctcactctgc tgctcaccgc acctaccaca ctgtccttga ctgctatgat aggctctacc 781 tctctaccaa cccccacctc tcataccccc ttcccaaaaa ctcctccttc ccctgtccct 841 tctgccagta cgacgagcag aacgaagtcc tctccccaga gtctctctgt ggcgaggggg 901 ccgaaccctg ctggaagtgc tcgcaggaca aaccccgccg caaatacaac actgtccctc 961 ctgaagaatg gctctatgat tctgatgtcc agtcctggtt ctatcctgaa acatactatt 1021 ctgacctcca acaaaagttc tttgacaaat tggctctcct ctctctccca ggtgcctacc 1081 aagcaaagac cccggaagag cgtgcccttg ctggcgcgct cacccaactt ctcaacttcc 1141 cctccacacc tcaactttcc attcccactg ccaatctcca acggcaaggc aactcggtca 1201 ccaacatcta cggcaatggc aacaacgtca ccactgacgt tggtgccaac ggttgggccc 1261 ccacggtctc aactggccta ggtgatggtc ccgtttccgc ctctgccgac tcccttcctg 1321 ggcgatccgg aggtgcctcc tccgagaaaa cccactctgt ctccggctct tccaacaaag 1381 tcggatcccg cttctccaag tggtgggaac cagccgccgc gcgtgctctg gagcgcgcca 1441 ccgactcagc catcgatgga atcgatgctg ctgggaaggc cgcctccaag gcgatcacgc 1501 gaaagctgga ccgtcccgcc gctccttcct ccaccgccaa cccccaaccc tctctcatcg 1561 ctctcaaccc atctgccacc caatccggta acgcctccat cctcaccgga tccactgccc 1621 cctccttcct cgcttacccc accgccactc ctgtccccct tccaaacccg gacgaaccct 1681 cccaacctgg cccatccggc gaccgcacct ggttgctgga tacagtcacc tggtcacagg 1741 aattcacccg gggttggaac attgcaggcc ctaacggcat gcagtggtct ggcctggaaa 1801 accccctctt ccccgtctcc acagacacca actggacctc ctccacaaac gctcccaccg 1861 cctaccccct acctttctcc ttcgtgcgtg cgtacccaga ctccccctgg gctgccatgt 1921 acaacaccca ctccatgtgg aactgcggtt ggcgcgtcca ggtgaccgtc aacggctcac 1981 aattccacgc tggagccctc atcctctata tggtccccga agccaccacc gagtcgatcc 2041 aaacggctcg gaacaacgct ggcttcgtct tcccctatgt catcctcaac ctctacgaga 2101 gcaacactgc taccatagag gtcccctaca tctcacccac ccccaacact tccagtggac 2161 tccacgcccc gtggacgttc tacctccagg tcctctcccc cttgaacccc cccccctcac 2221 tccccacttc tctatcctgc tccatctacg tcacacctgt tgactcctcc ttccacggtc 2281 tccgctacct ggctacacag cactggaaga cccgcgccgt ccccggtgcg ggtactttcg 2341 gttcagctgt cgctggccag gagcttccac tctgtggagt ccgagcttac tacccaccaa 2401 actcctacat cccagcccaa gtccacgatt ggttggaatt cgctcaccgt cccggtctca 2461 tggccaccgt gccgtggacc atggcggacg aaccagctga acgccttggt atctttcctg 2521 tctctcccag tgccatcgct ggtactggag cccccatctc ttacgtcatc tcccttttct 2581 cccagtggcg cggtgaactc gccgcccacc tcctcttcac tggttctgct cagcactacg 2641 gccgtctggt cgtgtgctac acccccgctg ctccccagcc acccaccacc atgcaggagg 2701 caatgcgcgg aacatacaca gtatgggacg tcaatgccgc ctcaaccctc gaattcacca 2761 ttcccttcat ttccaactcc tactggaaga cagtggacgt caacaacccc gacgctctat 2821 tgtcaaccac cggctatgtc tccatctggg tgcaaaaccc actagtcgga ccccacaccg 2881 ccccagcgtc agccctcgtt caggcattca tctccgcggg tgaatccttc aacgtccggt 2941 tgatgcaaaa ccccgccctc tcctcccaaa ctctcaccga ggatctcgat gcgccacaag 3001 acaccggcaa catcgagaat ggtgccgcgg acaacacccc acaaccgcgc accactttcg 3061 actacaccga gaatcctctg ccccctgaca ccaaactgga aaacttcttc tccttctacc 3121 gcttgttgcc catgggcaac aacggtgctc cctcactttc cttccccgcc aacgaaggca 3181 caatcatccc ccttaacccc atcaattggc ttcagggagc cgacgtgtcc ggaatcgcgt 3241 cgatgctatc gtgcttcaca tacatcgccg cggatctccg catcacgctc aggttcgcca 3301 atccaaatga caaccctgcc accatgctcg tcgccttcgc cccacctggc gcaacaatcc 3361 ctctccaccc cacacgccag atgctctcaa acttctacat ggcggaggtt ccggtctcag 3421 ccgccacctc caccatggtc tccttctcca tcccctacac ctcccctctt tctgccatcc 3481 ccacctcgta cttcggatgg gaggactggt caggcaccaa ctttggccag ctctcctccg 3541 gatcatgggg caacctcatg ctcatcccct ccctcgctgt cgattctgcc attcccttcg 3601 acttccagct ctcttgctgg gtcgccttcg gcaacttcaa agcctgggtc ccccgccctc 3661 cccctcccct cccgcccctc cccaccccaa ccaccaacgc ggagcgcgca gtggccgtca 3721 tcaaacaagg tgccgccgcc gccacgccgg acgtggaccc cgacgaccgg gtctacatcg 3781 tgcgtgcgca gcgccccacc tacgtccact gggccatccg caaggtctcc ccagacggca 3841 gtgctcaaca gatctcgctg tcccgcagtg ggatccgggc actggtcgcc ctcgaacccc 3901 ccgagggcga actctacctc gaagtcctcc cctcacattg gaccctcgct gaactccaac 3961 tcggcaacgg gtgggagtac agtgccacca acaactgtac ccacttcgtc agttccatca 4021 ctggcgaatc cctcccaaat actggcttct cccttgctct cggtatcggc gccctcaccg 4081 ccatcgcagc ttcggctgct gttgccgtga aagcgctcaa aggcatcagg cgccagggcc 4141 tcctcaccct ctctgccgat actgaaacca accagaccct aagcaaaatc actgaatccg 4201 tcaaccaagc agctcaggtt gtctcacagt tcgacctgag cggccctgca aattctgtct 4261 cccttgctgc ctctgacatt cgggaggccg cccacaaagt ggcctcctcc ctcaatggct 4321 tcaccgacgt catcgccgat atcaaggatt ccctcttcac ccgggtttcc gatgccgtcg 4381 agaccggcgt tgccactttc ctcacctggc tcgtcaaact ctttggctac ctcttagtcc 4441 tctttggatc ccccaccccc atgtctatct ctggcctcct tgtaatcatc tgtgctgatc 4501 ttgctcccca tgcccgcgag ttcttcactg cttctgaaaa tgtcctctcc tctctctact 4561 actggattgc cacaaaatta ggcctgtccg tcacacccca agagtgtgaa cgggcgaccc 4621 ttgaacccca agggctcaaa gacttcaacg acggcgcact cgcaatgcgc aacgtcgagt 4681 ggattggtga gactgcctgg aaatgggccc accgcctcct tgactggatc cgcggtaagg 4741 ccaaaaccga cccccaggca aagctcgccg acgtccacga tgaaatcatg ctccactact 4801 cagactccat actggctctc ggatctgaga aactcccaat tgaccacatc acaaattcca 4861 tctcccgctg ccgggaactg gtctccatcg cccaggaggc taggtccggc ccccactctt 4921 ccttcctcaa ccaatccatc aaaaactaca cccttgccat ttcccaacac cgcaaacgcc 4981 agaccggtcc acgaccggaa cccgtggtgg tctacctcta cggaccaccc ggcactggca 5041 agtcccttct cgcctccctc cttgctcaaa ccctctccca acgcctctct ggcacccctg 5101 acgacgtcta ttccccctcc tccgcttcct gcgaatactt cgacgggtac accggccaag 5161 ccgtgcactt catcgatgac atcggacagg atccggaggg gcgggactgg gcaaacttcc 5221 ccaacctcgt ctcctctgct cccttcatcg tccccatggc ctccctcgag gagaaaggca 5281 cccactacac ctccaaggtc atcgtggtca cttccaactt ccacgagccc aacgagcgcg 5341 ctgcgcgctc gatgggtgcc ctcagacgcc gcgtccacct gcggatcaac gtcacctcaa 5401 acggagttcc atttgacccc accaatgctc tcaaccccat ccctggaacc caatccaaat 5461 acttcactgc ccaaacccct ctcactctct tccagtccaa cacggttcgc ctggaccgtg 5521 actccatctg ggccccctcc ttttccaaca tggacgaact ggtcgacgcg atcgtgaccc 5581 gtctcaaccg ctctaccggt gtgtccaact ccctcgcttc tctcatcaaa cgccagggca 5641 accgggtcat cgacgcggaa cccagggaaa tccccctgga atacgccgac gatctcctgg 5701 aagctatggc acaccaccgc cccgtccctt gctccctcgg cctctcccag gccatcgcca 5761 acaacacccc cctccaacaa atctctgaca ccttctggaa ataccgcaaa cccatcttca 5821 cttgcaccac tttccttgct gtcctcggct ttctctgctc tgtcatccct ctcgcccgct 5881 ccctgtggag gtcccgccaa gacacgccac aggagacgca ggccgcctac tctgccatcc 5941 cacaccaaaa gtccaaaccc aagtcccaaa aacccgtccc cacccgccac atccagcggc 6001 agggcatctc ccctgccgtc ccaggcatct ccaacaatgt cgtccacgtt gagtccggca 6061 acggtctcaa caagaacgtc atgtctggct tttacatctt ctcccgtttc cttctcatcc 6121 ccacccacct ccgtgaaccc caccacacca ccctcatggt gggcaccgat acctacgact 6181 gggccgccct ccagacgcag gaactcggtg aaatcaccat tgtccatact ccaacctccc 6241 gccagtacaa ggacatgcgg cgcttcatcg gcgcccatcc ctaccctact ggtatcctgg 6301 tttcccaatt caaagcagct cccctctacg tccgcatctc cgacaaccgg attctggacc 6361 ttgacttccc cggagttgtc gtctgcaagc aggcatacgg ttaccgcgcc gcgaccttcg 6421 aaggtctgtg cggttccccg cttgttacag acgatccctc tggcgtcaag attctgggac 6481 tccacgttgc tggggttgcg ggcacgagtg ggttctctgc ccccatccac cccatcctcg 6541 gccaaatcac ccaatttgcc accacccaac aatccctcct cgtccccacc gctgaaatcc 6601 ggcctggcgt caacgtcaac cggatgtccc gcctgcaccc ctcccccgcc tacggtgcct 6661 tccccatcaa gaaacaacct gcccccctca agcggaacga ccgccgtttg caggagggtg 6721 ttgatcttga cacccagctt ttcctcaaac acggcaaagg cgacgttacc gagccctggc 6781 ccggtctcga agctgctgcc gacctctact tctccacctt cccctcttcc cttcctgtcc 6841 tgacccagga gcaggccatc catggcacac caaacatgga gggcctggac atgggacagg 6901 ctgcaggata cccctggaac acccttgggc gctcccggcg atctctcttc gacgagactg 6961 agccgggagt gttcgtcccc aaacccgaac tccaagctga aatcaaccag acacttgaag 7021 acccggatta cgtgtactcc accttcctca aggatgaact cagaccaaca gccaaggttg 7081 aacagggact gaccagaatc gtcgaagctg ctccgatcca cgctattgtc gctggccgga 7141 tgctcctcgg tggtctcata gactacatgc agggacgtcc cggcgagcac ggtagtgctg 7201 tcgggtgcaa cccagacgtc cactggactt ccttcttcta cgccttcagt gagttctctc 7261 aggtatacga tctggactac aagtgttttg atgcaactct tccctctgct gtcttttctc 7321 ttgtcgctga acacctcacc cgcatcaccg gagatccccg cgtcggtcgc tacatccact 7381 ccatccgcca ttcacaccac atctatggca accagatgta cgacatgatc gggggcaacc 7441 cgtccggttg tgtggccacc tctatcctca acaccatcat caacaacatc tgtgtcctct 7501 ctgccctcat ccagcaccct gatttctctc cctcccgttt ccacatcctc gcatatggtg 7561 acgatgtcat ctatgcgacg gaacccccca tccacccttc cttcctgcgg gagttctacc 7621 agaaacacac ccccctggta gtgacccccg caaacaaagg gcaggacttc ccccccacgt 7681 ccacgatcta tgaagtcacc ttcctcaaac gctggttcgt tccggacgat gttaggccca 7741 tctacatcca ccctgtgatg gaccctgaca cgtacgaaca atcggtgatg tggttgcgtg 7801 atggagattt ccaggacgtg gtgacctccc tttgtcacct tgccttccac agcggaccca 7861 agacgtacgc tgcctggtgc atgaaagtgc gcgagcagtg tctcaagtct gggttcgccc 7921 ccaacttcct tccttactcc tacctccaac tccgctggct taacctgcta gcagcctgat 7981 agttagggaa cacagtgctt cggcacgctt agttagttag aaccctctgc ccactcctcc 8041 atggtgatat aaagaccacc cacacttttc gggtgagccc ctaagccatg gttgtactgc 8101 actatcaacc taagacggtc cttctccgga tcgcactttc cccctggtgc cgcgcctccc 8161 gcgggagctg cacccgcgga ccagggtagt ctttgaactt ttctaactgt tcttacaaaa 8221 aaaaaaaaaa aaaaaaaaaa aa //