LOCUS MF327537 7886 bp DNA linear VRL 24-AUG-2017 DEFINITION Ailuropoda Melanoleuca papillomavirus 4 strain gpam003, complete genome. ACCESSION MF327537 VERSION MF327537.1 KEYWORDS . SOURCE Ailuropoda melanoleuca papillomavirus 4 ORGANISM Ailuropoda melanoleuca papillomavirus 4 Viruses; dsDNA viruses, no RNA stage; Papillomaviridae; unclassified Papillomaviridae. REFERENCE 1 (bases 1 to 7886) AUTHORS Zhang,W., Yang,S., Shan,T., Hou,R., Liu,Z., Li,W., Guo,L., Wang,Y., Chen,P., Wang,X., Feng,F., Wang,H., Chen,C., Shen,Q., Zhou,C., Hua,X., Cui,L., Deng,X., Zhang,Z., Qi,D. and Delwart,E. TITLE Virome comparisons in wild-diseased and healthy captive giant pandas JOURNAL Microbiome 5 (1), 90 (2017) PUBMED 28780905 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7886) AUTHORS Zhang,W. TITLE Direct Submission JOURNAL Submitted (10-JUN-2017) School of Medicine, Jiangsu University, 301 Xuefu Rd., Zhenjiang, Jiangsu 212013, China COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 8.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7886 /mol_type="genomic DNA" /country="China" /isolation_source="nasopharyngeal secretion" /collection_date="2015" /db_xref="taxon:2016453" /strain="gpam003" /organism="Ailuropoda melanoleuca papillomavirus 4" CDS 1..435 /codon_start=1 /protein_id="ASH99062.1" /translation="MFHTGNDYAMALPATVAELCLRAGVPRDDVQVPCVFCGGFLTFT ELCEFDAKCMRLRWKDGRAFGCCVRCACIVGKAERDRFLQASVVGIDLVRYCRGGFLR LTVRCWSCLRLMGATEKVSAVLAGQSFDLVRGRWRARCRFCP" /product="E6" CDS 446..724 /codon_start=1 /protein_id="ASH99063.1" /translation="MIGKEASLKDIVLEEQPNPVDDLWCDEELPPEEAEPLAPYRVQA PCGHCDRCLQIVVFGTRTSIRALQVLLQDDLAICCRDCAYSRRYHHGG" /product="E7" CDS 714..2627 /codon_start=1 /protein_id="ASH99064.1" /translation="MEGDDLDRGTADPEEGPSGWYIVREAECRDTDEDEEEEESDGEA DLTDLRDDTDLVDQGNSLELFHQREREVDELQVQALKRKYIDKSPSGPKQKPDLDLSP RLDAITITPPKQKAKRRLFEASLDSGLDLSGQNETLCSIGDTEEAQQVQVQQAEGGAQ GGSAGGAREGAGAGHGGPAMVQQIMKSSNQRATMHAMFKEAYGMGFGELTRTFKSDKT CNEDWVTAVFGVRPTLYEGLKTLLQAHCEYMYLTSTATRTGLIVLLLLRFKAHKCRDT LVKLLRSMLSVSEYQIMAEPPKVRSVPAALYWYKTSMSSTTDTQGTTPEWISRQTMLS HQTADEQKFDLSAMIQWAFDNEYTDECTIAYEYAKLADEDMNAAAWLSTNAQAKYVKD CCCMVRLYRRGIMRSMTMSEWVQARKDRVKGVGDWRHIVNFLKYQEVEFVGFLGALRH LLNGTPKRNCIAICGPPNTGKSQFCMSLLAFLGGNVISFANAKSQFWLQPLADTRLAL LDDATKPCWDYVDTYLRNALDGNPICLDLKHRAPMQIKCPPLLITSNIVVGEDDRWRY LHSRIKCFCFKNEFPFNVSGQPTYCLNDENWKCFFERLWLQLGLKSPEDEGNDGEPQQ AFRCGARKPSEPI" /product="E1" CDS 2569..4179 /codon_start=1 /protein_id="ASH99065.1" /translation="MESLSRRLDVVQESLLNLYETDSTELKSQVEHWSLARRENALLH CARRAGVLRVGYQPVPPLAASQERAKQAIEMQLTLESLLHTEYAWEAWTLADTSWERW TAEPSRCRKKGADQVEVRYDGDKQNCMWYTAWRSVYYIDADDVWHKTRSVVDHCGVYY RDRGGKRYYVRFERDAQRFSRSGQWDVLFNGETISSLEPVTSTTPPGHVPRAHQLPGG RETPDRDRSPTPVGPKRLRPAAAPAPLSGPQEPDVGSTSSGSASPEPCEGRPGGGPGA GALSPPGPEGLPRARRTLELAPGSGGSGGGVRGGGGRGGGGGGGGAGGGGAKRQRRVR EHRPGAGGAAGRLGPPVLPAPLSPGLPAPDPSRSPSPVALGTPLAPPEAAPTAAPDAG GPVGAPASPHAPAPGASPPHAARAAEGARRGVYPAAQGLLPALHRRPERPRHLLREAG AGSPLLAVLKGPCNVLKCFRYRAKNRHRTLFHHISTTWYWAGEEGAERLGDARILVKF RDPGQRDSFFTTVKLPGGVSVCASMADL" /product="E2" CDS 3125..3937 /codon_start=1 /protein_id="ASH99066.1" /translation="MCCLTVRQFLLWNLLLALLRPATFRERINYLVDGRPPTEIDRPR PWDPSDYDQRPPPPPYPGRRSPTLDPQAAALPPRSPVRDVPEEDPEPGPSRRPDPRDY LGRGGPSSLPQVPEAAEEELEEEGAEEEEEGEVVPEGAAQNDSAGSGSTGQEPEEPQG AWGPLYSPPLSPPDSPPLTPPDPPRLSPSERRLRRRRRRRPRPPTLEGPWVPLPPPTL LPQEHHRPTLPEQRKALEEAFTQLRKDCYQLCIDVQSDLDTFFGKLGLDPRY" /product="E4" CDS 4314..5798 /codon_start=1 /protein_id="ASH99067.1" /translation="MPRARRVRRANPTDLYRTCKAAGTCPEDVINKVEGSTVADKILR YGSLGVFFGGLGISTGAGRGGRLGYTPLGGDPTGGVRVGGGGRVVRPPVPVDAVGPTD ILPVDALDPSVVPLVDATDASVTLVEGAAEVPSGVPRVPPGGAGGAPVVTSDTSSSAV LEVAPEPSVSTRTTVSRSQFSNPAFEVTASSTNNYGETSGTNNIFVTRGSEGVGVGEE IPLAEFPRSSTPRDTPPPRPRRGGYPTRFIEHVPFDTVEGVLSYEYQNPAYDDSGLRL GPDEALERPADAQLGFTRLSSPKFSTSTTGRARVFRTGLRPSMTLRSGLRIGSQVHLY HDISDITEPEVIELQTIAETSSPSSVSSIDRAFEVIDLSSSDTVSLESGHHSSLADDS DIPLITGRLSFSVGPGAVPRTTLSLEVPIRGPLAIPPDNAWDGADVGVVVGPSRPVDA SVPWTPLLPTRPPALGGFPGTDYYLHPGLSHRKRRKRRPFWFLL" /product="L2" CDS 5799..7292 /codon_start=1 /protein_id="ASH99068.1" /translation="MALWIPNSQKLFLPPAPVAKIASTDDYVQRTTLYYHANSDRLLT VGHPYYEIKTPEGGIKVPKVSGNQYRVFRVLLPDPNAFAFSDGSVYNADRERLVWACR GVDIGRGQPLGIGLSGHPLFNRYADTENPPKYNGGEVRDDNRQSVSFDVKQTQLLIVG CTPPVGEHWKKAPACTGVAVTKGDCPALELVNSTIQDGDMADIGYGAMDFHVLNENRS EVPLDIADSICKYPDFLKMSKDTTGDSMFFFARREQMYTRHFFSRGGLNGEAIPENLY KKAKQGQAQQTPSTSVYFATPSGSLVSSDAQLFNRPYWLHRAQGLNNGICWLNELFVT VLDNTRGTNMSISVATTAAEEYTANEFKEYMRHVEEFELTFIFQLCKVALTPENLALL HTMNPTVLENWNLGLQPPTSSALEDTYRFLSSAATPCPGKVAAPPAADPYEALTFWTV DLRERMSNDLDQFPLGRKFIAQNAAPPTRKRAAPTRPKSTSAKRRRR" /product="L1" ORIGIN 1 atgttccaca caggaaacga ttatgccatg gctctgccgg ctacggtggc agagctgtgc 61 ttgcgcgcgg gggtacctcg ggacgatgtg caggtgccgt gcgtgttttg cgggggcttt 121 ctaacattta cagagctatg cgagtttgat gcgaaatgca tgcggctacg gtggaaagac 181 ggtcgtgcgt ttgggtgctg cgtgcgctgt gcatgcatcg ttggaaaggc tgaaagggac 241 cgctttctgc aggcctcggt ggtcgggata gaccttgtga gatactgcag gggtgggttt 301 ctaaggctta ctgtgcggtg ctggagctgc ctaaggctta tgggagccac agaaaaggtg 361 tcagcagtgc tcgcaggaca aagctttgac ctggtgagag ggaggtggag ggcgcggtgt 421 cgcttttgcc cataatctga tgataatgat tgggaaagaa gcgtccctaa aggacattgt 481 gcttgaggag cagccaaacc cagttgacga tttgtggtgc gatgaggaac tacctccgga 541 ggaggcggaa cctctagcac catacagagt gcaggcgccg tgcggccact gtgaccggtg 601 cctgcaaatt gtggtgttcg ggacacggac cagcatacgt gcgctgcagg tgctgctgca 661 ggacgaccta gccatctgct gccgcgactg cgcctacagc cgccgctatc accatggagg 721 gtgacgacct agacagaggt acagcagacc ccgaggaagg accgagcggg tggtacatag 781 tacgtgaggc ggagtgcagg gacacggacg aggacgagga ggaggaggag agtgacggag 841 aggctgacct aacggacctg agagacgata cagacctggt agaccaggga aattccctgg 901 aattgtttca tcagagggag agggaggtag acgaattaca ggtgcaagcc ctaaaacgaa 961 agtacataga caaaagcccg tcgggcccaa aacagaaacc agacctagat ctgagccccc 1021 ggctagatgc aatcaccatt acgccaccaa aacaaaaagc gaagagacgg ctgttcgagg 1081 ctagcctgga cagtggctta gacctctccg gccaaaatga aactctatgt tctattgggg 1141 acacggagga ggcgcaacag gtacaggtac agcaggcgga gggaggcgcg cagggaggca 1201 gcgcaggggg cgcacgcgaa ggcgctggcg cagggcacgg ggggcctgca atggtacagc 1261 aaattatgaa aagctctaac cagcgcgcaa cgatgcatgc tatgtttaag gaggcatatg 1321 gcatgggctt cggcgagctt acacgcacct tcaaaagcga caaaacatgc aacgaagact 1381 gggtgacggc cgtatttggc gttagaccca cgttgtatga gggcctaaaa acactactac 1441 aggcacattg cgagtatatg tatctgacca gcacagcgac acgaacaggc cttatcgtgc 1501 tgctgctgct gaggttcaag gcacacaaat gccgcgacac gttagtgaag ctactcaggt 1561 ccatgcttag tgtgtccgaa taccaaataa tggcggaacc gcccaaagta cgcagtgtgc 1621 cggcagcgct gtattggtac aaaacgtcca tgtcgagcac aacagacaca cagggaacga 1681 cgccagagtg gatctcgcga cagaccatgc tgagccacca aaccgcggac gagcaaaagt 1741 ttgatctgtc cgcgatgata caatgggcgt tcgataacga gtatacagat gaatgcacga 1801 tagcatatga atatgcaaag ctagcagatg aggatatgaa tgcagccgcc tggctgagca 1861 cgaacgcgca agctaaatac gtgaaggact gttgctgcat ggtcagactg tacaggcggg 1921 gtataatgcg gagcatgaca atgtcagagt gggtacaagc ccggaaggac cgtgtgaaag 1981 gggtgggcga ctggaggcat atagtgaact ttcttaaata ccaggaggtg gagtttgtag 2041 ggttcctcgg ggcgctgcgg cacctgctga acgggacccc gaaacgaaac tgcatagcta 2101 tttgtggccc cccaaacaca gggaagtcac aattctgcat gagcctactg gcgttcctcg 2161 gcggaaacgt gatatccttc gccaatgcca agagccagtt ctggctccag ccactggccg 2221 acacgcggct ggcattgctg gacgatgcca caaagccgtg ctgggactat gtagacacgt 2281 acctcagaaa tgccctggac gggaacccta tatgcctaga ccttaagcac agggcgccaa 2341 tgcagataaa atgtccgccg ctgttgataa caagcaacat agtagttggg gaggacgata 2401 ggtggcgcta ccttcacagc agaatcaagt gtttctgctt taagaatgag ttccccttta 2461 acgtttcggg ccagcccaca tactgtctca atgacgaaaa ttggaaatgt ttttttgaaa 2521 ggttgtggtt acagttagga cttaagagcc cggaagacga ggggaacgat ggagagcctc 2581 agcaggcgtt tagatgtggt gcaagaaagc cttctgaacc tatatgagac tgatagcaca 2641 gaactgaaaa gccaggtgga acactggtcg ctggccagac gggagaacgc gctactgcac 2701 tgcgcaaggc gagccggcgt gctacgggtg ggataccagc ccgtgccgcc cctcgcggca 2761 tcacaggaac gcgcgaagca ggccatagag atgcagctaa cgctggaatc tctgctgcac 2821 actgagtatg catgggaagc gtggacactg gcggacacta gctgggagcg gtggaccgcc 2881 gagcccagcc gctgccggaa aaaaggggca gaccaagtgg aggttagata tgacggggac 2941 aaacagaact gcatgtggta caccgcgtgg cgctcggtgt actacattga cgcagacgat 3001 gtgtggcaca aaacgcggag tgtggtggac cactgcggtg tgtactaccg agaccggggc 3061 ggcaagcggt actacgtgcg gttcgagcgc gacgcgcagc gctttagcag gagtggacag 3121 tgggatgtgc tgtttaacgg tgagacaatt tcttctttgg aacctgttac tagcactact 3181 ccgcccggcc acgttccgag agcgcatcaa ctacctggtg gacgggagac ccccgacaga 3241 gatcgatcgc ccacgcccgt gggacccaag cgactacgac cagcggccgc ccccgccccc 3301 ttatccgggc cgcaggagcc cgacgttgga tccacaagca gcggctctgc ctccccggag 3361 ccctgtgagg gacgtcccgg aggaggaccc ggagccgggg ccctctcgcc gcccggaccc 3421 gagggactac ctagggcgcg gcggaccctc gagcttgccc caggttccgg aggcagcgga 3481 ggaggagtta gaggaggagg gggcagagga ggaggaggag ggggaggtgg tgccggaggg 3541 ggcggcgcaa aacgacagcg ccgggtcagg gagcacaggc caggagccgg aggagccgca 3601 gggcgcctgg ggccccctgt actccccgcc cctctctccc ccggactccc cgcccctgac 3661 ccctccagat ccccctcgcc tgtcgccctc ggaacgccgc ttgcgccgcc ggaggcggcg 3721 ccgaccgcgg cccccgacgc tggagggccc gtgggtgccc ctgcctcccc ccacgctcct 3781 gccccaggag catcaccgcc ccacgctgcc cgagcagcgg aaggcgctcg aagaggcgtt 3841 tacccagctg cgcaaggact gctaccagct ctgcatagac gtccagagcg acctcgacac 3901 cttcttcggg aagctggggc tggatccccg ctattagctg tgcttaaggg accctgcaac 3961 gtgcttaagt gcttcaggta tagggccaag aaccgccatc gcacgctttt ccaccacatc 4021 agcacaacgt ggtactgggc gggcgaggag ggggccgaga ggcttgggga cgcccgcata 4081 ctggttaagt tccgggaccc cgggcaacgg gactcattct tcacaaccgt gaaactgccg 4141 gggggcgtgt ccgtgtgtgc ttccatggcc gacctctgat ggtgctgtcg tcttctaggt 4201 cccccacatt tcatccacac cctatacctc cagtttacac atttccttta cccggtggcc 4261 tgcgccgcct gccctagtgc accccgctgc tccccggcct ctaacctcct aacatgccgc 4321 gtgcgcgtag agttaggcgt gctaacccta ctgacctcta caggacgtgc aaggctgcgg 4381 gcacatgccc ggaggatgtt ataaataaag ttgaaggcag cacagtggcc gataaaattt 4441 tacggtatgg gagcctcggt gtgttcttcg gggggctggg catatccacc ggggcggggc 4501 gaggggggcg ccttggctac acgcctttgg ggggagatcc cacggggggc gtgcgggttg 4561 gggggggggg gcgtgttgtg cgtccgcctg taccggtgga cgctgtgggc cccacagaca 4621 ttcttcctgt ggatgcgctg gacccctccg tggtgccgct ggtggacgcc accgacgcct 4681 ccgttacgct tgtcgagggc gccgcggagg ttccatccgg tgtcccccgt gttccccccg 4741 ggggtgccgg tggagccccc gtggttacct ccgacacttc gtcctccgct gtgctcgagg 4801 tggcccccga acctagcgtg tccacacgca ccacagtcag ccgatctcag ttcagtaacc 4861 cggcctttga ggtcactgcg tccagcacta ataactatgg cgaaacctcg gggaccaaca 4921 acatatttgt cactcgcggc tccgagggtg tcggcgtggg cgaggagatt cccctggctg 4981 agtttccacg tagcagcacg ccgcgcgaca cgcctccccc aaggccgcgg cgggggggct 5041 atcctacccg tttcattgag cacgtcccct tcgacaccgt ggagggggtc ctgtcctatg 5101 agtaccagaa tccggcctat gatgatagtg gtctgaggct cgggccagac gaggcgcttg 5161 aacgtcccgc ggatgcacag ctgggcttca cccgcctctc aagccctaag ttctctacta 5221 gcaccactgg ccgtgcacga gtgttcagga caggcctacg gccttctatg acccttcgca 5281 gcggccttcg tatcgggtcc caggtgcacc tatatcatga cataagtgac atcactgagc 5341 ccgaggtaat agagttgcag accattgccg aaacgtccag cccatcctca gtctcaagca 5401 tagacagggc gtttgaggtc atcgacctct cgtcctctga caccgtgtct ctggagtcag 5461 ggcaccactc ctcccttgca gacgatagcg acataccact aattacaggc cgcttatcat 5521 tctctgtagg gcccggggct gtgccccgta ccacgctctc gcttgaggtt cctatacggg 5581 ggccccttgc aatccccccc gacaatgctt gggacggcgc tgacgtcggt gtcgtcgtcg 5641 ggccttcgcg ccctgtagac gcctccgtgc cgtggacccc tctcttaccc acgcgccctc 5701 ctgccctggg cggtttcccg gggactgatt attacttgca ccctggccta tcgcaccgga 5761 agcgacgcaa acgacgtcct ttctggtttc ttttgtagat ggctctctgg ataccgaata 5821 gtcagaagct gttcctgcct cctgctcctg ttgctaagat tgcaagcacg gacgattatg 5881 tccaacgcac tacgctgtac taccatgcta actctgatag gttgcttacc gtaggccatc 5941 catactatga gatcaagact cctgaagggg ggattaaggt ccctaaagtt tccgggaacc 6001 agtatagagt gtttcgtgtg cttcttccag atcccaatgc ttttgctttc agtgatgggt 6061 cggtgtacaa tgcagacagg gaacggttgg tgtgggcctg caggggcgtt gacattggcc 6121 ggggacagcc tctgggtata ggcctcagtg ggcatccctt attcaaccgc tacgcagaca 6181 cagagaatcc cccaaagtat aatgggggtg aggtcaggga tgacaatagg cagagcgtgt 6241 ccttcgacgt gaagcagaca cagctattga tcgtggggtg taccccgccg gtgggtgagc 6301 actggaagaa ggccccagcg tgtaccgggg tggctgtcac caagggggac tgtcctgccc 6361 ttgagcttgt caactccact atacaggatg gcgacatggc cgatataggc tatggggcca 6421 tggactttca tgtgctcaac gagaacaggt ccgaggtgcc gctggacatc gctgactcca 6481 tatgcaaata tcctgatttc cttaagatgt ctaaggacac cacgggggac tccatgttct 6541 tctttgctcg tagggaacaa atgtacacac ggcacttttt ctcacggggg ggcttgaatg 6601 gtgaggccat acctgaaaac ctatacaaga aggccaagca gggacaggcc cagcaaacgc 6661 cctccacctc tgtgtatttt gctactccca gtggctcgct ggtgtctagt gatgcgcagc 6721 tgttcaatcg cccatattgg ctgcataggg cccaaggcct taacaacggc atatgttggt 6781 tgaacgagtt gtttgttact gtgcttgaca atactcgggg tactaacatg tccatttcgg 6841 tggccaccac cgccgcggag gagtatacgg ccaacgagtt caaggagtac atgcggcacg 6901 ttgaggagtt tgagctgaca ttcatcttcc agctttgcaa agtggctctg acccccgaga 6961 accttgccct gctgcataca atgaacccca ctgtcctaga gaactggaac cttgggctgc 7021 agccacctac gagctcggcc ctggaggaca cgtataggtt cctttcctct gctgcaacgc 7081 cgtgccccgg caaggtggcc gcgcctccgg ccgccgaccc ctatgaggca ctgacgttct 7141 ggacagtgga cctgcgcgaa cggatgtcta atgaccttga ccagttccct ctcggccgga 7201 agttcattgc gcagaacgcg gcgcccccca cccgaaagcg tgccgcaccc actaggccta 7261 agtccacatc tgctaagaga aggcggcggt gagcgggcgc ccggggcttg ttctgtacct 7321 tccgcttttg gaataaacac tgcactttag ctaatcctct ttgcaagcat ttttccaagg 7381 ttaccgcgcc cggttcgtgt ttatgtgccc caaccgcacc cggtgactca gttggcatcg 7441 atatgctcct tcttctacct tagcaaccca ggcggtcgca tcctccagcg accacgtggt 7501 tccgctgatt ggatgttggc aagcgacgtg catcagataa aacaccgccc cgggttgccg 7561 ccaaactgtg agccaagctg cgcgccagct ggcagacgca cgacgctctg tgccagacct 7621 ctggcggttg ctctattgtt cttgtgccag acctttgacg gttgacctgc tgcgttagca 7681 cattcctaat cctccaaacg gcaccgctgg cggttggcgc ctttcctgct ctaggtgtga 7741 tcctcaccgg tcggcgaacc gcgagcggtc tgcaggtact aacagctgct ccttattgct 7801 tgctacaaca acaatctgtg cttcaaaagt taactcgacc gctgccggtc gctgccgtgt 7861 ttccggggta tagggggaac tatata //