LOCUS KY381284 6859 bp cRNA linear VRL 29-JUL-2017 DEFINITION Akabane virus strain GXLCH04 segment L RNA-dependent RNA polymerase gene, complete cds. ACCESSION KY381284 VERSION KY381284.1 KEYWORDS . SOURCE Akabane virus ORGANISM Akabane virus Viruses; ssRNA viruses; ssRNA negative-strand viruses; Bunyavirales; Peribunyaviridae; Orthobunyavirus. REFERENCE 1 (bases 1 to 6859) AUTHORS Tang,H.-B., Chen,F., Rao,G., Bai,A., Jiang,J., Du,Y., Ren,P., Liu,J., Qin,S., Yang,L. and Wu,J. TITLE Characterization of Akabane virus from domestic bamboo rat, Southern China JOURNAL Vet. Microbiol. 207, 280-285 (2017) PUBMED 28757035 REFERENCE 2 (bases 1 to 6859) AUTHORS Tang,H.-B., Chen,F., Rao,G., Jiang,J., Bai,A., Du,Y., Ren,P., Qin,S., Yang,L. and Wu,J. TITLE Direct Submission JOURNAL Submitted (21-DEC-2016) Guangxi Veterinary Research Institute, 51 You Ai Road, Nanning, Guangxi 530001, China COMMENT GenBank Accession Numbers KY381273, KY381279, and KY381284 represent sequences from the three segments of Akabane virus strain GXLCH04. ##Assembly-Data-START## Assembly Method :: DNAstar v. 5.0 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6859 /mol_type="viral cRNA" /country="China" /isolation_source="brain" /segment="L" /collection_date="16-Aug-2016" /host="Rhizomys pruinosus" /db_xref="taxon:70566" /strain="GXLCH04" /organism="Akabane virus" CDS 29..6784 /codon_start=1 /protein_id="ASM94315.1" /translation="MDNYKINQYRARINDANDPETAKDILADLLMDRHNYFGRELCYY LDIEYKNDTPIDDILLDFLPPGTDFKARYCTPDNYIIHNRKLYVLDYKVAVDNESSAK TFEKYDKIFGDVLVPLGLDYEIVVVRADPVRDIIHVNSEDFLNEFGPINMNLDFTWFY NLRALIYDKFKDDERFLEIASQGEFTMTGPWLDDETPELYDHPIFKEFYDSLPNESKI TFQRSMNFDATKGDKWNQNLVDTIHEYTPSYNLFIKNASSGIFKCHGDYPKPSNSEIT QGWQLMTERITSERELTNDINKQKPSVHFLWCPPSEASNENIKKLLRLSRMLQKLDGT STYLDAFKAIGILMDFSSNVGLYESHTSKLKNMSRQTSKKIDKKIEAIKIGTSTVMWE QQFVFDTNIIDHQSKGKLFKEFMGIGNHKQFSKKTIEDIDISKPTILDFNNKNIIDKC IFQYKNVDRILSKPNMLNKMGCYLEEYGPQICAASEETWETLKLICNMSYWSAIKDFS TLMKNMLAVSQYNRHNTFRVVTCANNNLFAIVMPSSDIKTKRATLAYFIICIHDHKDD IMHHGALHATFRSEGKYVSVSKGIRLDKERCQRIVSSPGLFLLTTLLMYNNNPTIKIE DVANFAFHTSLSITKAMLSLTEPSRYMIMNSLAISSHVKDYISEKFSPYTKTSFSVIM ANLIKKGCYNAYKQRSKVDLRSIHLTDYEITQKGVNNNRDLSSIWFEGKVSLKEYINQ IYMPFYFNSKGLHEKHHVMIDLAKTVLEIEHDQRLNIPGIWSSTPQKQTVNLPVLIYA ISKNLLMDTSRHNYIRSRIENSNNLKRSITTISTFTSSKSCIKVGDFTDFKSRESRIV NAKLEKDIRKYTIANPEFVEDLTEKATIRHAIYDDLKKAIPDYIDVMSTKVFDALYYK IKHGEITDRPAVEHILQVMKDHKRFVFTYFNKGQKTAKDREIFVGEFEAKMCLYLVER ISKERCKLNPDEMISEPGDGKLKKLEDMAEYEIRYTANTLKSMKDKALQEFSRFADDF NFKPHSTKIEINADMSKWSAQDVLFKYFWLFALDPALYKTEKERILYFLCNYMDKILV IPDDVMTSILDQRVKREQDIIYEMTNGLKQNWVSIKRNWLQGNLNYTSSYLHSCCMNV YKDIIRNVALLLEGDVLVNSMVHSDDNHTSITMIQDKLSDDIIIEYCIKLFEKICLSF GNQANMKKTYVTNFIKEFVSLFNIYGEPFSVYGRFLLTAVGDCAFLGPYEDTASTLSA TQTAIKHGAQPSIAWVAIALTQWITHSTYNMLPGQNNDPLNVLTSQNRFDIPIELCGL LNTDLPTLAIAGLEAGNLTYLVNLSRRMSKVQLLRESIQSQYADIESWDLSKLTQMDK FKLKLLRFMTLDSAMSSDDGMGETSDMRSRSLLTPRKFTTHASLVRLESYNDFQKLVQ DQSQIDDLFEFFIRMPQLLVTKGETTEEFMKSILFRYNSRKFKESLSIQNPAQLFIEQ VLFANKPMIDYTSIHDRLFGIQDDPNIDDCTMIIGKKTFIETYRQIQIDLNKFEITNQ DVKTIYAFCLMNDPILVACANNILLSMHGLQMNRNGMTCCMMPEIKSLKVIYHSPALV LRAYVQENNNIKGAEPDEMQRDLYHLEEFIAKTKLRESMQARIAKNELKTMGRDFKFE IQELTKFYQICYDYIKSTEHKIKIFILPKRAYTPIDFCGMITGNTLKDQCWFTIHYLK QITVPARKAQIATSLDLEIQIAYEALRLIAHFADTFIAENSRVPFLKQVISSFLYKGI QMQVLYNKIKASRLRTKILPILFYMGDLEQLDVDRYDAEKAEEQITWNNWQVSREFTT GPIDLSIKGYGRSIRIIGEDTRLTAAELQINRMRNDIISRHGQSLLNKPHGLRFEKMD EVEFLDDKLHYIVYQLRDRKRYYYNILSTNAIYEHNDRLSQTRSRRNNRWIPVCPVAI SKYVNTDRPILDKIEMLNIDNTKLTSLQVAVSDTAMVRKAALAKMSFFEGPPIQCGGI DLSKLMQNQTIINLDINKISSISLLDLCRIFSCRGYSNDQDAFEFLSDEVMNEDISEE LDSSPVLKITYTKKSNSQNTFKNAIVKALVRECDRFEEIFDLSDDGFTSDTNLELLEN LVWILNHLKTNQWSTELMECIHMCLYRNEMDHIYHNFQIPDVFVTNPIELSIKWLDVI EFLEMILAHDFKSEPWISIMNHSITKAIDYSRLEHKKASAQANISKFIKGKKMGGRSK FDF" /product="RNA-dependent RNA polymerase" /note="pol" misc_feature 1802..4039 /db_xref="CDD:282102" /note="Bunyavirus RNA dependent RNA polymerase; Region: Bunya_RdRp; pfam04196" misc_feature 44..346 /db_xref="CDD:317864" /note="L protein N-terminus; Region: L_protein_N; pfam15518" ORIGIN 1 tagtgtaccc ctaaatacaa catacaacat ggacaattac aagatcaatc aatatcgtgc 61 taggattaac gatgcgaatg atccagaaac tgctaaagat atattagctg atctattaat 121 ggatcggcat aactactttg gcagagaact ctgttactat cttgacattg agtataaaaa 181 tgacacgcca attgatgata tcctcctgga tttcctacca ccagggactg atttcaaggc 241 tagatactgt acacctgaca attatataat tcacaacaga aagttatatg tattggatta 301 caaggttgct gtcgataatg aatcttcagc taagactttt gaaaagtatg acaagatatt 361 tggcgatgtt ttggtgccat tgggcctgga ctatgagata gttgttgtta gggcagaccc 421 ggtgcgagac ataatacatg tcaattcgga agacttcctt aatgagttcg ggccgattaa 481 tatgaactta gattttactt ggttttacaa tcttcgtgca ttaatatatg ataagtttaa 541 agacgatgag cgctttttgg aaatagccag ccagggtgaa tttacaatga ctgggccatg 601 gcttgacgac gaaacaccag aattatatga tcatcctata ttcaaagagt tttatgattc 661 tctgccaaat gagtcaaaaa ttacctttca gcggtcaatg aacttcgatg caacaaaagg 721 tgacaaatgg aatcaaaacc tggttgatac aattcatgaa tatactccaa gttataatct 781 ctttataaaa aatgcctcat ctggcatttt taaatgtcat ggagattacc cgaaacctag 841 caattctgaa atcacacaag gttggcaact aatgacagag agaataacta gtgaaagaga 901 actaactaat gacataaaca aacaaaagcc ttctgtccac ttcctctggt gtccaccaag 961 tgaagcgtcc aatgaaaata tcaaaaagtt gttacgatta tccagaatgc ttcaaaagtt 1021 agatggcacc agcacatact tagacgcatt taaagccatt ggtatcctga tggatttctc 1081 atcaaacgtt ggattgtatg aatcacatac aagcaagcta aagaatatgt caaggcaaac 1141 atcgaaaaag attgacaaga aaattgaagc tataaaaatc ggtacatcaa ctgtaatgtg 1201 ggagcagcaa tttgtcttcg atacaaacat cattgatcac cagtcaaagg ggaaactctt 1261 caaagaattc atgggaattg gcaaccataa gcaattttca aagaagacaa tcgaagacat 1321 tgacatctca aagccaacta tattagattt taataacaaa aacataattg acaaatgtat 1381 attccaatat aaaaatgttg acaggatatt atcaaagcca aatatgctaa acaagatggg 1441 gtgttatctt gaagaatatg gcccacaaat ttgtgcagca tcagaagaaa catgggaaac 1501 acttaagctt atatgcaaca tgtcatattg gtcagcaata aaagatttct cgacattaat 1561 gaaaaacatg ctggcagtgt cgcagtacaa taggcacaac acattccggg tagtaacctg 1621 tgcaaataac aatttatttg ctattgttat gccatcttca gatattaaga caaagagggc 1681 aacattggca tactttataa tatgtattca cgatcataaa gatgacatta tgcatcatgg 1741 agctttacat gcaacattta gaagtgaagg gaaatatgta agtgtctcaa aggggatcag 1801 attggataaa gagagatgcc aaaggatagt ttcttcccct ggattattct tattaacaac 1861 actgctgatg tataacaata acccaacgat taagattgag gatgttgcaa attttgcttt 1921 ccatacgtct ctatctatta cgaaagctat gttatcctta actgagccat ctagatatat 1981 gataatgaat tcacttgcta tttctagcca tgtcaaagat tacatatcag aaaaattctc 2041 accatataca aaaacaagct tttcagtgat tatggctaat ctgataaaga aaggctgtta 2101 caacgcatat aagcaaagat caaaagttga tctcagaagc atacatctaa cagactacga 2161 aataactcag aaaggtgtca acaataaccg tgatttatca tccatttggt ttgaaggtaa 2221 agtgtcattg aaagaatata taaaccagat ttacatgccc ttttacttta attcaaaagg 2281 attgcatgaa aagcaccatg ttatgattga tcttgcaaaa acagtactag agatagagca 2341 tgatcaacgc ctcaatatac ctggtatatg gtctagtact cctcagaaac aaacagtgaa 2401 tctgcctgtt ttgatatatg ctatttcaaa aaacctccta atggatacat ctagacataa 2461 ttatattcgg tctagaatag aaaactcaaa taatttaaag cgatctatca ccactatcag 2521 cacttttact agttcaaaat catgcattaa ggttggtgac tttacagatt tcaagtcaag 2581 agaatcaagg attgtcaatg ctaaactaga gaaagatatc aggaagtaca caatagcaaa 2641 cccagaattc gttgaagacc tgacagaaaa ggccactata aggcatgcta tttatgatga 2701 cttaaaaaaa gctataccag attatattga tgtaatgtct actaaagtat ttgacgcatt 2761 gtattataaa atcaagcatg gtgaaataac agacagacca gccgttgaac atatactcca 2821 agtcatgaag gatcataaga gatttgtctt tacatatttc aataaagggc agaaaacagc 2881 aaaagacaga gaaatatttg tgggagagtt tgaagccaaa atgtgcttat acttagtaga 2941 gaggatatcc aaagaaaggt gtaaactcaa cccagatgag atgattagcg aacctggaga 3001 tggcaagtta aaaaagcttg aagacatggc tgaatatgag attcggtata ctgctaacac 3061 attaaaatcc atgaaagaca aggcactgca agaatttagt aggtttgcag acgacttcaa 3121 ttttaagcca cactcaacaa aaatagagat aaatgcagac atgtcaaaat ggagtgcaca 3181 agatgttctc ttcaagtatt tttggttatt tgctcttgac cctgcacttt ataaaacgga 3241 gaaagaaagg attttatact tcttatgcaa ctacatggac aaaatactag ttattcctga 3301 tgatgtgatg acgtcgatat tagatcaacg tgtaaaacga gaacaggaca tcatatacga 3361 aatgacaaat gggctaaaac aaaactgggt ttctattaaa cgaaactggc ttcagggcaa 3421 tctaaattac acatctagct acttacattc ttgttgtatg aatgtctaca aagacattat 3481 caggaatgta gctttgctcc tagaaggaga cgttttagta aactcaatgg ttcattcaga 3541 tgataaccac acttcaataa caatgattca agacaaactc tcggacgata tcattattga 3601 atactgcatt aaattatttg aaaagatatg cctatctttt ggaaaccagg ccaacatgaa 3661 gaagacttat gttacaaatt tcatcaaaga atttgtttct ttgttcaata tctatggaga 3721 accgttctca gtatatggtc ggtttttgct tactgcagta ggtgattgtg cattcctcgg 3781 cccgtatgag gatacagcaa gcacgttatc tgctactcag actgcaatca aacatggagc 3841 tcaaccatct attgcttggg ttgcaattgc acttactcag tggataacac atagtactta 3901 taacatgcta cctggacaaa acaatgaccc attgaatgtt ttaacttcac aaaacagatt 3961 tgacatacct atagaacttt gtgggttatt aaatacagat ttgccgacat tggcaatagc 4021 aggcttagaa gcaggcaatt tgacttattt ggtcaatttg tctagaagga tgtccaaagt 4081 ccagctactg cgcgaaagca ttcaatctca atatgcagac atagaatctt gggatttaag 4141 taagttgacg cagatggata aatttaaact taagttgttg aggttcatga cattagattc 4201 agctatgagt agcgacgatg gcatgggaga gactagcgat atgcgttctc gatctctgtt 4261 aacgccacgg aaatttacaa cacatgcatc tttagttagg ttagaatctt acaatgactt 4321 ccagaaactg gtacaggacc agagtcaaat agatgactta ttcgaattct ttattaggat 4381 gccgcaattg ttggttacta aaggggagac aactgaagag tttatgaaat caatcttgtt 4441 caggtacaat agcaggaaat tcaaagaatc cttatcaata caaaacccag cacagctttt 4501 tatagaacaa gtgttatttg caaacaagcc catgattgac tatactagca tacatgacag 4561 actttttggc atacaagatg atcctaatat agacgactgt acgatgataa tagggaaaaa 4621 gacctttatt gagacgtatc ggcagataca aatagatctt aataaatttg agatcactaa 4681 tcaagatgtc aaaaccattt atgcattctg tctaatgaat gatcctatac tagtagcatg 4741 tgctaacaat attttgctat ctatgcatgg tctgcaaatg aatcgtaacg gaatgacatg 4801 ttgtatgatg ccagaaataa aatctctaaa ggtgatatat cactcaccgg ctctagtact 4861 acgagcatat gtacaagaaa ataataatat caagggagct gaacctgatg aaatgcagcg 4921 tgatctgtac catctagagg agttcattgc caaaactaaa cttcgtgaaa gtatgcaagc 4981 tagaattgca aaaaacgaac ttaaaactat gggtagagac ttcaaatttg agatccaaga 5041 attgacaaaa ttttatcaga tatgttatga ctatataaaa tctactgaac ataaaatcaa 5101 aatattcatc ttacctaaac gagcttacac tccaattgac ttctgtggta tgattacagg 5161 taacacatta aaagatcaat gctggtttac tatacattat ttaaagcaga ttacagtacc 5221 agcaagaaaa gcccagatag caacatcgtt agacttagag atacaaatag cctatgaagc 5281 attgagatta attgcacatt ttgcagacac atttattgct gaaaattcaa gagttccatt 5341 cctcaagcaa gtcatatcaa gtttcttata taaaggtatt caaatgcaag tgctatacaa 5401 taagataaaa gcctcccgac ttaggacaaa aatattacca attctgtttt acatgggcga 5461 tttggagcag cttgatgtag acaggtatga tgcagaaaaa gcagaagagc agataacatg 5521 gaataattgg caagtatcta gggaatttac aacaggacca attgacttgt ctataaaagg 5581 atatgggaga tctataagaa ttatagggga agatacacga ctgactgcag ctgagctaca 5641 aattaaccgt atgagaaatg atataatatc aaggcatgga cagtcgctgt tgaacaaacc 5701 acatggtcta agatttgaaa aaatggatga ggtagaattt ttggatgaca aactgcatta 5761 tattgtctat cagttaaggg acagaaaacg ctattattat aatatattgt ccacaaatgc 5821 tatatatgaa cataatgaca gattgagcca aacaagatca agaagaaata atcgatggat 5881 acctgtctgt ccagtagcaa tatcgaagta tgtcaataca gatagaccta tattagataa 5941 aatagaaatg ctcaatattg ataatactaa gctaactagt ctgcaagtgg ctgttagcga 6001 tactgcaatg gttagaaagg cagcacttgc aaaaatgtct ttttttgaag gtccacctat 6061 acagtgtggg ggtatagatc tttcaaaact gatgcagaac cagaccatca taaacttaga 6121 tatcaacaag atttcatcaa taagtctatt agacctttgt agaatttttt catgtagggg 6181 ctattcaaat gatcaagatg catttgagtt cttatctgat gaagttatga atgaagacat 6241 atctgaagaa ctagacagtt cgccagtttt aaaaattaca tatacaaaaa agtcaaattc 6301 gcaaaacaca tttaagaatg ctatagtaaa agctttagta cgtgaatgcg acagattcga 6361 agagatattt gatctttcag atgacgggtt tacctcagat actaatttgg aactgttaga 6421 gaatctagtc tggatactaa accacttaaa gaccaaccaa tggtctacag aattgatgga 6481 atgcattcac atgtgcttat acagaaatga aatggaccat atataccaca acttccaaat 6541 accagatgtg tttgtaacaa acccaattga gctgagtatt aaatggttag atgtaataga 6601 attcctagaa atgatccttg ctcatgactt taagtctgaa ccctggatat caataatgaa 6661 ccactctatc acaaaagcta ttgattactc gcgtttagaa cataaaaagg cgagtgcgca 6721 agcaaatata tccaagttca taaaggggaa gaaaatgggt ggtcgatcaa aatttgattt 6781 ttaagtgaat tggtagagct cagtatgatt tttattgaca aagtgtgttt agaataagta 6841 tattattgca tttaggggc //