LOCUS KR260715 4329 bp cRNA linear VRL 19-SEP-2015 DEFINITION Akabane virus strain JaLAB39 segment M, complete sequence. ACCESSION KR260715 VERSION KR260715.1 DBSOURCE BioProject accession PRJNA257008 KEYWORDS . SOURCE Akabane virus ORGANISM Akabane virus Viruses; ssRNA viruses; ssRNA negative-strand viruses; Bunyavirales; Peribunyaviridae; Orthobunyavirus. REFERENCE 1 (bases 1 to 4329) AUTHORS Tesh,R.B., Lin,D., Hari,K. and Weaver,S.C. CONSRTM Consortium for Microbial Forensics and Genomics (microFORGE) TITLE Draft genome sequence of the Akabane strain JaGAr39 isolated from a mosquito in Japan in 1959 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4329) AUTHORS Tesh,R.B., Lin,D., Hari,K. and Weaver,S.C. CONSRTM Consortium for Microbial Forensics and Genomics (microFORGE) Consortium for Microbial Forensics and Genomics (microFORGE) TITLE Direct Submission JOURNAL Submitted (22-APR-2015) Microbiology and Immunology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX 77555, USA COMMENT RNA available from Scott Weaver (sweaver@utmb.edu). ##Genome-Assembly-Data-START## Assembly Method :: Trimmomatic v. 0.32; SGA v. 0.10.13; iMetAMOS v. 1.5; samtools v1.1; FastQC v. 0.10.0; Spades v. 3.1.1; idba v1.1.1; Pilon v. 1.8; Quast v. 2.2; Prokka v. 1.7 Assembly Name :: AKAV002-SEQ-1-ASM-1 Genome Coverage :: 7352.95x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4329 /mol_type="viral cRNA" /country="Australia" /segment="M" /collection_date="20-Aug-1959" /host="Aedes vexans" /db_xref="taxon:70566" /strain="JaLAB39" /organism="Akabane virus" gene 22..4227 /gene="GP" CDS 22..4227 /inference="ab initio prediction:Prodigal:2.60" /inference="similar to AA sequence:UniProtKB:P04505" /codon_start=1 /protein_id="ALE15080.1" /gene="GP" /translation="MIITILNVLTLVVAVTAMPPRNTNGGRCFYGGDMFRQINSTSPM SEICVRDDISLVKSIGYHKLAANREVIESSMSYYRLYYVKNWFECNPVQDILGTFMVF DVNHEGILAPKTYACRATCSISLERDTGNVVLESPALNHYTIHGTTIKNGWFKTKVSI DLDNTCEDLHITCGHKTLNVHACFRQHKSCIRYFKGSILPEVMIESICTNAELILLCC FSAISCFVAIILTKTYLVYLLIPIFYPFVKLYGLLLQRFCKQCKNCLLPIHPFSPCPT TCICGMVYNSTEALKVHRKCLNCTGYKTLTKTRYLCKKRLPNMALATISTVLFFTFIT PITAECYNYTSLPADFQAAIDKNNSCTREQLIMIILTILCIASIIMVISAVHLYIRIC YVFCAYCGMVHEKKGLILLDNFTSHCLTCICRDKSIHRANNNCVAPMKYKTAKYTNLL CIIFLIIIAVTPAFSACIQEKEIETIDDAAMCIGLYQNITQPKEYNTFVKELSSTLSS HEIEFLLPAVKPSFDYLITKSSTSKDLHSATIHEFIAANLYPNSFKKHLASAGPDSIK WKTYIQNNNLHLCNDHVVKMICRCVIKQEECSSTKVDDGEQIAQYYKKNKEFYKADLE ILYTVISRAIPGLVGNLLRQVLKSQKYEESLHVLNKIKKDVSKNNQLNGIVEFLIHIN SKNITEEVRELRIRPDLSIRGSKFTDKNPGTPNIKECQTPLFITCTGKRFRSLMKQYI ACSNGGVKLYQRPNKPLALVDNKLCIGDKYCMIAFDPMVIDENIQKLDCYSLAATDQS DGMLKPERSIRLLKTGECKIAGALSRIAVSINQKNYKYSTIVHRKSDLVDEYCLSPNC DLDCYPYYPANLVDCSWSESTHSTLSQKVISHTDIESFISSVKLSLHNDLIQHHFRPL SNMPHVKPNFKSINVQGTISGGKIQDSYITFSIPLMTGLSQGFTLQDHKGNTLFDIIA YVKSARVIATYNHEYKTGPTVSINVQHNEQCTGSCPSSIPKKDNWLTFSREHTSTWGC EEWGCLAIGTGCVYGSCQDVIREEATVISRVNNEQLEVEFCVSEPTSTMCNTINVLEP VLGEHMQFEVHSVQTNLLPEVALIKNRRVYKGSINKKGVFNPQCGSVQSFDGKLYGVG NPKFDYICHALSRKDIVVRKCYENHYYSCATLKEAVEIKSNITNSKTMLYNDNALLGS ASVKIMLGDLIYQQASVQEKDIRGHATCGGCTDCFNDVACKISMTSNGVYQCPIVSSC DSYINNVYINEGTNDINLKFRCLKAEIKISICGREMPVKSEIIKDTKKLDLASADQTS YIKEFDKKCATWLCRAYNEGIGFVLEPLWNELSLWGKYVLLALAIIISVLILIKVIRP LARYIVAVLKENDKVYKLENKLK" /product="M polyprotein" /note="VD79_00002" ORIGIN 1 gtagtgaact accacaacaa aatgattatt acaattctca acgtgcttac attagtagtc 61 gctgtgactg caatgcctcc tcgtaatacg aatgggggtc gatgctttta tggtggcgac 121 atgtttcgcc agatcaattc aacatcacca atgagtgaaa tctgtgtcag agatgacata 181 tccctagtta aatctattgg ttatcacaaa ctggcagcaa atagagaagt tattgagtca 241 agcatgtcat actacaggtt atattacgtc aaaaattggt ttgagtgcaa tccagttcaa 301 gacatcctcg gaacttttat ggtgttcgac gtgaatcatg agggcatttt agcacctaag 361 acatatgctt gcagagctac ctgctcaata agcttggaac gagacactgg caatgttgtg 421 ttggagtccc cagcattaaa ccactatacc atacatggga caactatcaa gaatggctgg 481 ttcaagacaa aggtttctat agacctggac aacacctgtg aagacctaca tattacttgc 541 ggccataaaa cccttaatgt tcatgcatgc ttcaggcaac ataagtcatg tattcgttac 601 ttcaaggggt caatcctacc tgaagtcatg attgagtcaa tctgtacaaa tgcagagctg 661 atattattat gctgcttttc tgcaatttcc tgttttgtgg ctatcatctt gacaaagaca 721 tatttagtgt atctgctcat accaattttt tacccgtttg taaagctcta tggcctattg 781 ctgcagagat tctgcaagca atgcaaaaat tgcttattac cgattcatcc tttcagtcct 841 tgtccaacaa catgtatctg tggaatggtt tataattcta ctgaagcttt aaaagttcat 901 agaaaatgtt tgaattgcac tggctacaaa accctgacta aaacgaggta tttatgtaaa 961 aaaagactcc ccaatatggc attggccaca atcagcacag tactgttctt tactttcata 1021 acccctataa cggctgaatg ctataattat acgagcttac cagcagattt tcaagctgct 1081 atagataaaa ataattcttg tacacgtgaa caattaataa tgattatatt aacaatccta 1141 tgtattgcct caatcattat ggttatatca gcagtccacc tgtatatacg aatatgctat 1201 gtattttgcg cttactgcgg aatggtacac gaaaagaagg gtctgatttt actagataat 1261 ttcacatctc attgccttac atgcatctgt cgtgataaaa gcatacacag agccaacaat 1321 aattgtgttg ctccaatgaa atacaaaact gccaaatata ctaacctact gtgcattatc 1381 ttcctgatta ttattgctgt cactcctgct tttagtgctt gcatacaaga aaaagaaatc 1441 gaaacaatag atgatgctgc aatgtgtatc ggtctgtatc aaaatataac tcagccaaag 1501 gagtacaata cctttgtgaa agaactctca tcaacattaa gcagtcatga aattgaattc 1561 ctcctaccag ctgtcaaacc atcattcgat tatctgataa ctaaatcatc cacatctaaa 1621 gatcttcata gtgctactat tcatgaattt atagctgcta atctataccc caacagcttc 1681 aaaaaacact tggcatcagc aggaccagac agcataaaat ggaaaacata tattcaaaat 1741 aacaacttac acttatgcaa tgatcatgtt gtcaaaatga tatgccgctg tgtgattaag 1801 caagaggaat gcagctctac aaaagtggat gatggagaac agattgcaca gtactataaa 1861 aaaaacaaag aattttataa ggctgatttg gagatattat acacagtcat atcaagagca 1921 atcccaggat tagttggtaa tttactgcga caggttctga aatcccaaaa atacgaggag 1981 tcattgcatg tcttaaacaa gataaaaaaa gatgtttcaa aaaataatca gctgaatggc 2041 atagtggaat ttctgataca tattaattcg aaaaatataa ctgaagaggt tagggaattg 2101 agaatcaggc ctgatcttag tatcagggga tccaaattca cagacaaaaa cccaggaact 2161 cccaacatca aagaatgcca aactccactg tttattacat gtactgggaa aagatttcga 2221 tcactgatga agcagtatat tgcttgctcc aatgggggcg tcaagttata ccagcgacca 2281 aacaaacctc tagcacttgt agacaataag ctttgcattg gtgacaaata ctgtatgata 2341 gcattcgatc caatggtgat agatgagaat atacaaaaac tggattgtta tagcctagct 2401 gcgacagacc aatcagatgg aatgctgaaa cctgagaggt ctattcgact cctcaaaaca 2461 ggcgaatgta aaatagcagg ggcattatct agaattgcag tatcaataaa tcaaaaaaat 2521 tataaatact ccactatagt tcataggaag agtgatttag ttgatgagta ttgtctaagc 2581 ccaaattgtg acttagattg ctacccttat tacccagcca acctagttga ctgctcttgg 2641 agtgaatcga ctcattctac cctaagccag aaagttatat ctcatacaga tatagaatca 2701 tttatatcca gtgttaagct ctccttgcat aatgatctaa tccagcacca ttttaggcca 2761 ctaagtaata tgccgcacgt aaagcccaac tttaagtcaa taaatgttca aggaacaatt 2821 tctggtggca agattcaaga cagctacata acattctcaa taccattaat gactggacta 2881 tcgcaaggtt ttacattaca agatcataaa ggcaataccc tcttcgacat tatagcatat 2941 gtgaaaagtg cacgtgtaat tgcgacatat aatcatgaat acaagacagg acctacagtg 3001 agtatcaatg ttcagcataa tgagcaatgc acggggtctt gccccagcag tatacctaaa 3061 aaggataatt ggctaacctt ctctcgtgaa catactagca cctggggttg tgaggagtgg 3121 ggttgcttag cgataggtac ggggtgcgta tatggatctt gtcaagatgt cattagagaa 3181 gaagcaacag ttatttccag agtaaataat gaacagctag aagttgaatt ttgcgtttca 3241 gaacctacaa gcacaatgtg caatactatc aatgtacttg agccagtatt gggagagcac 3301 atgcaatttg aagtccacag tgtacagact aatctattac ctgaggtagc tttaattaaa 3361 aataggaggg tgtacaaggg atcaataaac aaaaaaggtg tgtttaatcc tcagtgtggc 3421 tcagttcaat catttgatgg taaactttat ggcgttggaa atccaaagtt tgattatatt 3481 tgccacgcat tatcaagaaa ggatatagtt gtaaggaaat gttatgaaaa tcattactat 3541 tcgtgcgcta cactcaaaga agctgtagaa attaaatcaa acatcacaaa ttctaagact 3601 atgctttata atgataatgc tttacttggt agtgcatctg taaagataat gttaggcgat 3661 ttaatatacc agcaagcatc agtgcaagag aaagacataa ggggccatgc gacttgtgga 3721 ggctgtacag attgttttaa cgacgttgca tgcaaaatta gtatgacttc aaatggtgtt 3781 tatcagtgcc cgatagtgtc ttcttgtgat tcttatatca ataatgttta tataaatgaa 3841 ggcacaaatg atatcaactt gaaattccga tgccttaagg cagaaatcaa gattagtatc 3901 tgtggtagag agatgcctgt gaaatctgag ataattaaag acacaaagaa gctagatttg 3961 gctagtgccg accaaacgtc ctatatcaaa gagtttgaca aaaaatgtgc cacatggcta 4021 tgcagagctt ataatgaagg aattggcttt gtcttagaac cattatggaa tgagttaagc 4081 ttgtggggaa aatatgtcct gcttgcatta gctataatta tcagtgttct gatccttata 4141 aaagtaataa ggccattggc aagatacatt gttgcagtac ttaaagagaa tgacaaagtg 4201 tacaaactag aaaataagct gaaataatca aattaaaata gacataatgg gagggtggtg 4261 ggagttttct gctgatataa taattatttg ttgtggtaga aatgacaaag tgtacaaact 4321 agaaaataa //