LOCUS KR260716 6854 bp cRNA linear VRL 19-SEP-2015 DEFINITION Akabane virus strain JaLAB39 segment L, complete sequence. ACCESSION KR260716 VERSION KR260716.1 DBSOURCE BioProject accession PRJNA257008 KEYWORDS . SOURCE Akabane virus ORGANISM Akabane virus Viruses; ssRNA viruses; ssRNA negative-strand viruses; Bunyavirales; Peribunyaviridae; Orthobunyavirus. REFERENCE 1 (bases 1 to 6854) AUTHORS Tesh,R.B., Lin,D., Hari,K. and Weaver,S.C. CONSRTM Consortium for Microbial Forensics and Genomics (microFORGE) TITLE Draft genome sequence of the Akabane strain JaGAr39 isolated from a mosquito in Japan in 1959 JOURNAL Unpublished REFERENCE 2 (bases 1 to 6854) AUTHORS Tesh,R.B., Lin,D., Hari,K. and Weaver,S.C. CONSRTM Consortium for Microbial Forensics and Genomics (microFORGE) Consortium for Microbial Forensics and Genomics (microFORGE) TITLE Direct Submission JOURNAL Submitted (22-APR-2015) Microbiology and Immunology, University of Texas Medical Branch, 301 University Boulevard, Galveston, TX 77555, USA COMMENT RNA available from Scott Weaver (sweaver@utmb.edu). ##Genome-Assembly-Data-START## Assembly Method :: Trimmomatic v. 0.32; SGA v. 0.10.13; iMetAMOS v. 1.5; samtools v1.1; FastQC v. 0.10.0; Spades v. 3.1.1; idba v1.1.1; Pilon v. 1.8; Quast v. 2.2; Prokka v. 1.7 Assembly Name :: AKAV002-SEQ-1-ASM-1 Genome Coverage :: 7352.95x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..6854 /mol_type="viral cRNA" /country="Australia" /segment="L" /collection_date="20-Aug-1959" /host="Aedes vexans" /db_xref="taxon:70566" /strain="JaLAB39" /organism="Akabane virus" gene 33..6788 /gene="RdRp" CDS 33..6788 /protein_id="ALE15081.1" /gene="RdRp" /note="VD79_00003" /codon_start=1 /inference="ab initio prediction:Prodigal:2.60" /inference="similar to AA sequence:UniProtKB:Q6Q305" /product="RNA-directed RNA polymerase L" /translation="MDNYKINQYRAKINDANDPETAKDILADLLMDRHNYFGRELCYY LDIEYKNDTPIDDILLDFLPPGTDFKARYCTPDNYIIHNGKLYVLDYKVAVDNESSAK TFEKYDKIFGDVLVPLGLDYEIVIVRADPVRDVIHVNSEDFLHEFGPINMNLDFTWFY NLRALIYDKFKDDERFLEIASQGEFTMTGPWLDDETPELYDHPIFKEFYDSLPNESKI TFQRSMNFDATKGDKWNQNLVDTIHEYTPSYNHFIKTASSGIFKCRGDYPKPSNSEIT QGWQLMTERITSERELTNDINKQKPSIHFLWCPPSEESNENIKKLLRLSKMLQKLDGT STYLDAFKAIGILMDFSSNVGLYESHTSKLKNMSRQTSKKIDKKIEAIKIGTSTVMWE QQFVFDTNIIDHQSKGKLFKEFIGIGNHKQFSKKTIEDIDISQPTILDFNNKNIIDKC IFQYKNVDKILSKPNMLNKMGCYLEEYGPQICAASEETWETLKLICNMSYWSAIKDFS TLMKNMLAVSQYNRHNTFRVVTCANNNLFAIVMPSSDIKTKRATLAYFIICIHDHKDN IMHHGALHATFKSEGKYVSISKGIRLDKERCQRIVSSPGLFLLTTLLMYNNNPTIKIE DVANFAFHTSLSITKAMLSLTEPSRYMIMNSLAISSHVKDYISEKFSPYTKTSFSVIM ANLIKKGCYNAYKQRSKVDLRSIHLTDYEITQKGVNNNRDLSSIWFEGKVSLKEYINQ IYMPFYFNSKGLHEKHHVMIDLAKTVLEIEHDQRLNIPGIWSSTPQKQTVNLPVLIYA ISKNLLMDTSRHNYIRSRIENSNNLKRSITTISTFTSSKSCIKVGDFADFKSRESRIV NAKLEKDIRKYTIANPEFVEDLTEKATIRHAIYDDLKKAIPDYIDVMSTKVFDALYYK IKHGEITDKPAVEHILQVMKNHKRFVFTYFNKGQKTAKDREIFVGEFEAKMCLYLVER ISKERCKLNPDEMISEPGDGKLKKLEDMAEYEIRYTANTLKSMKDKALQEFSRFADDF NFKPHSTKIEINADMSKWSAQDVLFKYFWLFALDPALYKPEKERILYFLCNYMDKVLV IPDDVMTSILDQRVKRERDIIYEMTNGLKQNWVSIKRNWLQGNLNYTSSYLHSCCMNV YKDIIKNVAMLLEGDVLVNSMVHSDDNHTSITMIQDKLPDDIIIEYCIKLFEKICLSF GNQANMKKTYVTNFIKEFVSLFNIYGEPFSVYGRFLLTAVGDCAFLGPYEDTASRLSA TQTAIKHGAQPSVAWVAIALTQWITHSTYNMLPGQNNDPLNVLTSQNRFDIPIELCGL LNTDLPTLAIAGLESGNLTYLVNLSRRMSKVQLLRESIQSQYTDIESWDLSKLTQMDK FKLKLLRFMTLDSAMSSDDGMGETSDMRSRSLLTPRKFTTHASLVRLESYNDFQKLVQ DQRQIDDLFEFFIRMPQLLVTKGETTEEFMKSILFRYNSRKFKESLSIQNPAQLFIEQ VLFANKPMIDYTSIHDRLFGIQDDPNIDDSTMIIGKKTFVETYRQIQIDLNKFEITNQ DVKTIYAFCLMNDPILVACANNILLSMHGLQMNRNGMTCCMMPEIKSLKVIYHSPALV LRAYVQENNNIRGAEPDEMQRDLYHLEEFIAKTKLRESMQARIAKNELKTMGRDFKFE IQELTKFYQICYDYIKSTEHKIKIFILPKRAYTPIDFCGMITGNTLKDQCWFTIHYLK QITVPARKAQIATSLDLEIQIAYESLRLIAHFADTFIAENSRVPFLKQVISNFLYKGI QMQVLYKKIKASRLRTKILPILFYMGDLEQLDVDRYDAEKAEEQITWNNWQVSREFTT GPIDLSIKGYGRSIRIVGEDTRLTAAELQINRMRNDIISRHGQSLLNRPHGLKFEKMD EVEFLDDKLHYIVYQLRDRKRYYYNILSTNAIYEHNERLSQTRSRRNNRWIPVCPVAI SKYINTDRPILDRIEMLNIDNTKLTSLQVAVSDTAMVKKAALAKMSFFEGPPIQCGGI DLSKLMQNQTIINLDINKISSISLLDLCRIFSCRGYSNDQDAFEFLSDEVMNEDIPEE LDSSPVLKITYTKKSNSQNTFKNAIVKALVRECDRFEEIFDLSDDGFTSDSNLELLEN LVWILNHLKTNQWSTELMECIHMCLYRNEMDHIYHNFQIPDVFVTNPIELSIKWLDVI EFLEMILSHDFKSEPWISIMNHSITKAIDYSRLEHKKTSAQANISKFIKGKKMGGRSK FDF" /EC_number="2.7.7.48" ORIGIN 1 ccggtagtgt acccctaaat acaacataca acatggacaa ttacaagatc aatcaatatc 61 gtgctaagat taacgatgcg aatgatccgg aaactgctaa agatatatta gccgatctat 121 taatggatcg acacaactac tttggcagag aactctgtta ctatcttgat attgagtata 181 aaaatgacac gccaattgat gatatcctgc tggacttctt accaccaggg actgatttca 241 aggctagata ctgtacacca gacaattaca taattcacaa cgggaagtta tatgtattgg 301 attacaaggt tgctgtcgat aatgaatctt cagctaaaac ttttgaaaaa tatgacaaga 361 tattcggcga tgttttggtg ccattgggcc tggattatga gatagtcatt gttagggcag 421 acccagtacg ggatgtgata catgttaact cagaagattt ccttcatgag ttcggaccga 481 ttaatatgaa cttagatttt acttggtttt acaatcttcg tgcattaata tatgataagt 541 ttaaagacga tgaacgcttc ttagaaatag ctagccaggg tgaatttaca atgactgggc 601 cgtggcttga tgatgaaacg ccagaattgt atgatcatcc tatattcaaa gaattctatg 661 actccctgcc aaatgagtca aaaattacct tccagcgctc aatgaacttt gatgcaacaa 721 aaggcgacaa atggaaccaa aacctggttg atacaataca tgaatacacc ccaagttaca 781 atcactttat aaaaactgcc tcatctggta ttttcaaatg tcgtggagat tacccgaaac 841 ccagcaattc tgaaattaca caaggttggc aactaatgac agagagaata accagcgaga 901 gagaactgac taatgacata aataaacaaa aaccttctat ccactttctc tggtgtccac 961 caagtgaaga gtccaatgaa aatatcaaaa agttattacg gctatctaaa atgctccaaa 1021 agctagatgg caccagcaca tatttggacg catttaaagc cattggcatt ctaatggatt 1081 tctcatccaa tgttggattg tacgaatcac atacaagcaa gttgaaaaat atgtcaaggc 1141 aaacatcaaa aaagattgac aaaaaaatcg aagctataaa aattggtacc tcaactgtaa 1201 tgtgggaaca gcaatttgtc tttgatacaa acatcataga tcaccaatcg aaggggaagc 1261 tcttcaaaga atttatagga attggcaacc ataagcaatt ttcaaagaaa acaattgagg 1321 acattgatat ctcacagcct actatattag acttcaataa caaaaacata attgacaagt 1381 gtatattcca atataaaaac gttgacaaga tattatcaaa gccaaatatg ctaaacaaga 1441 tgggatgtta tcttgaagag tatggcccac aaatttgtgc tgcatcagaa gaaacgtggg 1501 aaacacttaa gcttatatgc aacatgtcat attggtcagc aataaaggat ttttcgactt 1561 taatgaaaaa catgttggca gtgtcacagt acaataggca caatacattc cgggtagtga 1621 cctgtgcaaa taataactta tttgctatcg ttatgccatc ttcagatatt aagacaaaga 1681 gggcaacatt ggcatacttt ataatatgta ttcatgatca taaagacaac attatgcatc 1741 atggggcttt acatgcaaca tttaaaagtg aaggaaaata tgtaagtatc tcaaaaggga 1801 tcagattaga caaggagagg tgccaaagga tagtttcttc ccctggacta tttttactaa 1861 ctacactatt gatgtacaac aacaacccga cgattaagat tgaggatgtt gcaaattttg 1921 cttttcatac atctctatct atcacaaagg ccatgttatc cttaactgag ccatctaggt 1981 atatgataat gaattcactt gctatatcaa gtcacgttaa agattacata tcagagaagt 2041 tttcaccata tacaaaaaca agcttctcag taattatggc taatttgata aaaaagggct 2101 gttacaacgc atataagcaa agatcaaaag ttgatcttag aagcatacat ctaacagact 2161 acgaaataac tcagaagggt gttaataata accgcgattt gtcatcaatc tggtttgagg 2221 gcaaagtgtc gttgaaagaa tatataaatc agatttacat gcccttttac tttaattcaa 2281 aaggattgca cgaaaagcac catgttatga ttgatctcgc aaaaacagta ctagaaatag 2341 agcatgatca acggctcaat atacctggta tatggtctag tactcctcag aaacagacag 2401 tgaatctgcc tgttttgata tatgctattt ctaaaaatct cctaatggac acgtctagac 2461 acaattatat ccgatctaga atagaaaact caaataactt aaagcgatct atcactacta 2521 tcagcacttt tactagttca aagtcgtgta ttaaggttgg tgattttgca gacttcaaat 2581 caagagaatc aagaattgtc aacgctaaac tcgagaagga tatcaggaag tacacaatag 2641 ccaacccaga atttgttgaa gatctgacag aaaaggccac tataaggcac gccatttatg 2701 atgacttaaa aaaagctata ccagattata ttgatgtgat gtctactaaa gtatttgacg 2761 cgttgtatta taagattaag catggtgaaa taacagacaa accagctgtc gagcatatac 2821 tccaagtcat gaaaaatcat aagagatttg tctttacata ttttaataaa ggtcaaaaaa 2881 cagcaaaaga tagagaaata tttgtgggag agtttgaagc taaaatgtgc ttatacttag 2941 tagaaaggat atctaaagaa aggtgcaaac tcaatccaga tgagatgatt agcgaacctg 3001 gagatggtaa gttaaaaaag cttgaagata tggctgaata cgaaattcga tatactgcta 3061 acacattaaa atccatgaaa gacaaggcac tgcaagaatt tagtagattt gcagatgatt 3121 tcaattttaa gccacattca acaaaaatag agataaatgc agacatgtca aaatggagtg 3181 cacaagatgt tctcttcaaa tatttttggt tattcgctct tgaccctgca ctttataaac 3241 cagagaaaga aaggatttta tacttcttgt gtaattacat ggataaggtg ctagttattc 3301 ctgatgatgt gatgacgtcg atattagatc aacgtgtaaa gcgagaaagg gatattatat 3361 acgaaatgac gaacgggctg aagcaaaact gggtttctat taaaagaaac tggcttcagg 3421 gtaacctgaa ttacacatct agctatttac attcttgttg tatgaatgtt tacaaggaca 3481 ttatcaagaa tgtagctatg ctcctagaag gcgatgtttt agtgaactca atggttcact 3541 cagatgataa tcacacttcg ataacaatga ttcaagacaa actcccagat gatatcatta 3601 ttgaatactg cattaaatta tttgaaaaaa tatgcctgtc ctttggaaac caagctaaca 3661 tgaagaagac ctacgttaca aatttcatca aagaatttgt ttctctgttc aatatctatg 3721 gagaaccgtt ctcagtatac ggtcggtttt tactcaccgc agtaggtgat tgtgcattcc 3781 ttggtccgta tgaagataca gcaagcaggt tatctgctac tcaaactgca attaaacatg 3841 gtgctcagcc atctgttgct tgggtggcaa tcgcccttac tcagtggata acacatagca 3901 cttataacat gttacctgga caaaacaacg atccactgaa tgttttaact tcgcaaaata 3961 gatttgatat acctatagaa ctttgcggat tgttaaatac agatctgcca acattggcaa 4021 tagcaggttt agaatcaggc aatttgactt atttggttaa tttgtccaga aggatgtcca 4081 aagtacagct actacgtgaa agtattcaat ctcaatatac agacatagag tcttgggact 4141 taagcaagtt gacacagatg gataagttta agcttaagtt gctgaggttc atgacgttag 4201 attcagctat gagtagcgac gacggtatgg gagagactag tgatatgcgt tctcggtctc 4261 tgttaacgcc acggaaattt acaacacatg cgtccttagt taggttagaa tcttacaatg 4321 atttccaaaa actagtgcag gaccagaggc aaatagacga cttatttgaa ttctttatta 4381 gaatgccaca attgctagtt actaaagggg agacaactga agaatttatg aaatcaatct 4441 tgttcaggta caatagcagg aaattcaaag aatccttatc aatacaaaac ccagcacagc 4501 tctttataga acaggtacta tttgcaaaca agcccatgat tgattatact agtatacatg 4561 acagactttt tggtatacaa gatgatccta atatagatga cagtacgatg ataataggga 4621 agaagacctt tgttgagacg tatcgacaga tacaaataga tcttaataaa tttgagatca 4681 ccaatcaaga tgtcaaaacc atttatgcat tctgtctaat gaatgatcct atattagtag 4741 cctgtgccaa caacattttg ctatctatgc atggtctgca aatgaatcgt aacggaatga 4801 catgttgtat gatgccagaa ataaaatctt taaaagtgat ataccactcg ccggctttgg 4861 tgctacgagc atatgtacaa gaaaataaca atatcagggg agctgaacca gatgaaatgc 4921 agcgtgatct gtaccatcta gaggaattta ttgccaaaac taaacttcgt gaaagtatgc 4981 aagctagaat tgcaaaaaac gaacttaaaa ctatgggtag agactttaaa tttgagatcc 5041 aagaattaac aaaattttat cagatatgtt atgactatat taaatctact gagcataaaa 5101 ttaagatatt cattttacct aaacgagctt atactccaat tgacttctgc ggcatgatta 5161 caggtaatac attgaaagat caatgctggt ttactataca ttatctaaag caaattacag 5221 taccagcaag gaaagcccag atagcaacat cgttagactt agagatacaa atagcctacg 5281 agtcattgcg attaattgca cattttgcag acacatttat tgctgagaat tcaagagttc 5341 cattccttaa gcaagttata tcaaatttcc tatataaggg tattcaaatg caagtgctat 5401 acaagaaaat aaaggcttcc cgacttagga caaaaatatt accaattttg ttttacatgg 5461 gcgatttaga acagctcgat gtagacaggt atgatgctga aaaggcagaa gagcagataa 5521 catggaacaa ttggcaggta tctagagaat ttacaactgg accaattgac ctgtcgataa 5581 aaggatatgg gagatctata agaattgtag gggaagatac acgactgact gcagctgagc 5641 tacaaatcaa ccgcatgaga aatgatataa tatcaaggca tggacagtct ctgttgaaca 5701 ggccacacgg cctgaaattt gaaaaaatgg atgaggtgga attcttggat gacaagctgc 5761 attatattgt ctatcagtta agagatagaa aacgttatta ttataatata ttgtccacaa 5821 atgcaatata tgagcataat gaaaggttga gccaaacaag gtctagaaga aataaccggt 5881 ggatacctgt ttgtccagta gcaatatcaa agtatatcaa tacagatagg cctatattgg 5941 atagaataga aatgctcaat atcgacaata ctaagttaac tagcctacaa gtagctgtta 6001 gtgatactgc aatggttaag aaagcagcac ttgcaaaaat gtcttttttt gaaggtccac 6061 ctatacaatg tgggggtata gatctttcaa aattgatgca gaaccaaacc atcataaact 6121 tggatatcaa caagatttcc tcaataagtc tactagatct ttgtagaata ttctcatgca 6181 ggggctattc aaatgatcaa gatgcatttg aattcttatc tgatgaagtt atgaatgaag 6241 acattcctga agagctagac agctcaccag ttttgaaaat tacatataca aaaaagtcga 6301 attcacaaaa cacatttaaa aatgctatag taaaggcttt agtacgtgaa tgcgatcgat 6361 ttgaagagat atttgatctt tcagatgatg gtttcacttc agatagcaat ttggaactgt 6421 tagaaaatct agtttggata ctaaaccact tgaagactaa ccaatggtct acagaattga 6481 tggagtgtat ccatatgtgc ttatacagaa atgaaatgga tcatatatac cacaacttcc 6541 aaataccaga tgtatttgta acaaacccaa ttgaactgag tattaaatgg ttagatgtaa 6601 tagaattcct agaaatgatt ctttctcatg attttaagtc tgaaccctgg atatcaataa 6661 tgaaccattc tatcacaaaa gctattgatt actcacgttt agagcataaa aagacaagtg 6721 cacaagcaaa tatatccaaa ttcataaagg gaaagaagat gggtggtcga tcaaaatttg 6781 atttttaaat gagttgatag agatcagtac gattttattg acaaagtgtg tttagaataa 6841 gtatattatt gcat //