LOCUS KT878959 4161 bp DNA linear VRL 14-FEB-2016 DEFINITION Aleutian mink disease virus strain M195, complete genome. ACCESSION KT878959 VERSION KT878959.1 KEYWORDS . SOURCE Aleutian mink disease virus ORGANISM Aleutian mink disease virus Viruses; ssDNA viruses; Parvoviridae; Parvovirinae; Amdoparvovirus. REFERENCE 1 (bases 1 to 4161) AUTHORS Canuti,M., O'Leary,K.E., Hunter,B.D., Spearman,G., Ojkic,D., Whitney,H. and Lang,A. TITLE Driving forces behind the evolution of the Aleutian mink disease parvovirus in the context of intensive farming JOURNAL Virus Evol 2 (2016) In press REFERENCE 2 (bases 1 to 4161) AUTHORS Canuti,M., Whitney,H. and Lang,A.S. TITLE Direct Submission JOURNAL Submitted (06-OCT-2015) Biology, Memorial University of Newfoundland, 232 Elizabeth Ave, St John's, NL A1B 3X9, Canada COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4161 /mol_type="genomic DNA" /country="Canada: Newfoundland" /collection_date="2014" /host="Neovison vison" /db_xref="taxon:28314" /strain="M195" /organism="Aleutian mink disease virus" gene 2..2007 /gene="NS1" CDS join(2..1757,1838..2007) /codon_start=1 /protein_id="AME15895.1" /gene="NS1" /translation="MAQAQIDEQKRLQDLYKQLKEEISNGEGLAWLFQQKTYTDKDNK PTKATPPLRTTSSDLRLAFESIEENLTTSNENLTNDEIQFCKLTLGKTLLLLDKHVKS HRWDSNKVNFIWQIEKGXTQXFHIHCCLGYFDNNEDPKDVQKSLGWFIKKLNKDLAVI YSNYHCDIQDIKDPEDRAKNLKVWVEDGPTKPYKYFNKQTKQDYNKPVNLRDYTLIYL FNKDKITVEGMDGYFTAGNGGIVDNLTNKERKTLRKMHLDEQTXDILDADINWEDGQD APKVTDQTDSASTKTGTSLIWKSCATKVTSKKEVANPVQQPSKKLWSAQNTLDALFNV GCFTAEDMIIKQSDRYLELSLEPNGPQKINTLLHMNQVKTSSMLTAHECIMKFNEEED DKPLLETIKNMGLNEXYXKKVLCTILTKQGGKRGCIWFYGPGGTGKTLLASLICKAVV NYGMVTTSNPNFPWTDCGNRNVIWAEECGNXGXWVEDFKAITGGGDVKVDTKNKQPQS IKGCVIITSNTNITKVTVGCVETSAHAEPLKQRMVKIRCMKTINPKTKVTPGMLKKWL KTWDGQAIPLNHEMPELYLETTGPNSSATSATKTTGNSQPTTAKSAESVSTADCDTPK RGASSVPPKQHKRPRHE" /product="nonstructural protein 1" gene 2..2003 /gene="NS2" CDS join(2..180,1838..2003) /codon_start=1 /protein_id="AME15896.1" /gene="NS2" /translation="MAQAQIDEQKRLQDLYKQLKEEISNGEGLAWLFQQKTYTDKDNK PTKATPPLRTTSSDLRDYWTKLECHECHEDYWQLTTYYCKECRKCEHGRLRHTKKGCE QCASKAAQKTSA" /product="nonstructural protein 2" gene 2..1617 /gene="NS3" CDS join(2..180,1533..1617) /codon_start=1 /protein_id="AME15897.1" /gene="NS3" /translation="MAQAQIDEQKRLQDLYKQLKEEISNGEGLAWLFQQKTYTDKDNK PTKATPPLRTTSSDLRLCDYNKQHQHNQSNCWMCGNKRSRRAT" /product="nonstructural protein 3" gene 2000..4103 /gene="VP1" CDS join(2000..2009,2083..4103) /codon_start=1 /protein_id="AME15898.1" /gene="VP1" /translation="MSRIPQHYPGKKRSAPRHVFIQQAKKKKQTNPAVYHGEDTIEEM DXXEPEQMDTEQATNQTAEAGGGVGNSTGGFNNTTEFKVINNEVYITCHATRMVHINQ ADTDEYLIFNAGRTTDTKTAQKKLNLEFFVYDDFHQQVMTPWFLVDSNAWGVWMSPKD FQQMKTLCSEISLVALEQEIDNVTIKTVTETTQGNATTKQFNNDLTASLQVALDTNNI LPYTPAAPLGETLGFVPWRATKPTQYRYYHPCYIYNRYPNIQKTGPELEWSGTQDDYL SVDEQYFNFITIENNIPINILRTGDNFHSGIYEFKSKPCKLTLSYQSTRCLGLPPLCK PKTDATHKVTSLENGGDLIYIEGQDNTRLGHFWGEERGKKNAEMNRVRPYNIGMQYPE WIIPAGLQGSYFAGGPRQWSDTTKGAGTHSQQLQQNFSTRYIYDRNHGGDNEVDLLDG IPIHERSNYYSNHEIEQHTAKQPKLHSAAIHHSKIDSWEEEGWPAASGTHFEDEVIYL DYFNFSGEQELEFPHEVLDDAAQMKKLLNSYQPTVALDNVGPVYPWGQIWDKKPDMDH KPSMNNSAPFVCKNNPPGQLFVKLTENLTDTFNYDENPDRIKTYGYFTWRGKLVLKGK LSQVTCWNPVKRELIGEPGVFTKDNYHKQIPNNKGNFEIGLQYGRSTIKYIY" /product="capsid protein 1" gene 2202..4103 /gene="VP2" CDS 2202..4103 /codon_start=1 /protein_id="AME15899.1" /gene="VP2" /translation="MDXXEPEQMDTEQATNQTAEAGGGVGNSTGGFNNTTEFKVINNE VYITCHATRMVHINQADTDEYLIFNAGRTTDTKTAQKKLNLEFFVYDDFHQQVMTPWF LVDSNAWGVWMSPKDFQQMKTLCSEISLVALEQEIDNVTIKTVTETTQGNATTKQFNN DLTASLQVALDTNNILPYTPAAPLGETLGFVPWRATKPTQYRYYHPCYIYNRYPNIQK TGPELEWSGTQDDYLSVDEQYFNFITIENNIPINILRTGDNFHSGIYEFKSKPCKLTL SYQSTRCLGLPPLCKPKTDATHKVTSLENGGDLIYIEGQDNTRLGHFWGEERGKKNAE MNRVRPYNIGMQYPEWIIPAGLQGSYFAGGPRQWSDTTKGAGTHSQQLQQNFSTRYIY DRNHGGDNEVDLLDGIPIHERSNYYSNHEIEQHTAKQPKLHSAAIHHSKIDSWEEEGW PAASGTHFEDEVIYLDYFNFSGEQELEFPHEVLDDAAQMKKLLNSYQPTVALDNVGPV YPWGQIWDKKPDMDHKPSMNNSAPFVCKNNPPGQLFVKLTENLTDTFNYDENPDRIKT YGYFTWRGKLVLKGKLSQVTCWNPVKRELIGEPGVFTKDNYHKQIPNNKGNFEIGLQY GRSTIKYIY" /product="capsid protein 2" ORIGIN 1 catggctcar gctcaaattg atgagcagaa aagactgcaa gacctgtata agcagttgaa 61 ggaggagatt agcaacggtg aaggacttgc ctggttgttc caacaaaaga cctacaccga 121 caaggacaac aaaccaacca aggcaacacc accactgagg acaacctctt ctgatctaag 181 gttagctttt gaatctattg aagagaattt aacaacttct aatgaaaact taactaatga 241 tgagatacag ttttgtaaac taaccttagg gaagacgttg ctgttacttg ataagcatgt 301 aaagagccac agatgggata gtaacaaagt taactttatt tggcaaatag aaaaaggaam 361 gactcagcrc tttcatatyc actgttgctt aggttacttt gataacaacg aagatcctaa 421 ggatgttcaa aaatccttag gttggtttat aaaaaaacta aataaagacc tagcagttat 481 ctatagtaac tatcattgtg acatacaaga tattaaggat cctgaagata gagctaagaa 541 cctaaaagtg tgggtggaag atggacccac taagccttac aaatatttta acaaacaaac 601 caaacaagac tacaacaaac cagttaactt gagagactat acattgatat acctatttaa 661 caaagataag ataactgtag agggtatgga tggttacttt actgctggta acggtggcat 721 tgttgacaac ctaactaaca aagaacgaaa aactttaaga aaaatgcact tagatgagca 781 gacttyagat atactggatg ctgatataaa ctgggaagat ggccaagacg cgccaaaagt 841 aactgaccaa actgactcag caagcacaaa aacaggaact agtttgattt ggaaatcatg 901 tgctactaaa gtaacctcaa aaaaagaagt tgctaatcca gttcagcaac cttctaaaaa 961 actgtggtca gctcaaaata ctttagatgc attatttaac gttggttgct ttactgcaga 1021 agatatgatt ataaagcaaa gtgacagata ccttgaacta tctttagaac caaacgggcc 1081 tcaaaaaatt aacactttac ttcacatgaa ccaagtaaaa acatcaagca tgcttactgc 1141 tcatgagtgt attatgaaat ttaatgaaga ggaagatgac aaacctttgc tagaaactat 1201 aaaaaacatg ggacttaatg aaraatacyt taagaaagta ctatgtacca tcctaaccaa 1261 gcaaggtgga aagagaggtt gtatttggtt ctatgggccg gggggcactg gaaaaacctt 1321 gctagcatct ttaatatgta aagcagtagt aaactatggt atggttacta caagcaatcc 1381 aaactttcca tggactgact gtggcaatag aaacgtcatt tgggctgaag agtgtggtaa 1441 cwtgggtamy tgggttgaag actttaaagc cattactgga ggtggtgatg taaaagtaga 1501 caccaagaac aagcaacctc aatctattaa aggctgtgtg attataacaa gcaacaccaa 1561 cataaccaaa gtaactgttg gatgtgtgga aacaagcgct cacgcagagc cacttaaaca 1621 gaggatggtt aagatacgtt gcatgaaaac catcaaccct aaaactaaag taacaccagg 1681 catgttaaaa aaatggctaa aaacctggga tggacaagca attccactaa accatgagat 1741 gcctgaactg tacttaggta agtaccgttg gtaagtaaca cattttaaat gccaacttta 1801 aaccaacatc aatttatgag gttactttac tttacagaga ctactggacc aaactcgagt 1861 gccacgagtg ccacgaagac tactggcaac tcacaaccta ctactgcaaa gagtgcagaa 1921 agtgtgagca cggccgactg cgacacacca aaaaggggtg cgagcagtgt gcctccaaag 1981 cagcacaaaa gacctcggca tgagtagaag taagtaacct acttaaagta acctagcacc 2041 atgacacttt actttacttg tacttatgtt actttacttt agttcctcag cactatcctg 2101 gaaaaaagag aagtgctcca agacacgtgt ttattcarca agcaaaaaag aagaagcaaa 2161 ctaaccctgc ggtgtaccac ggagaagaca caatagagga aatggattyt rctgaacctg 2221 aacaaatgga cactgagcaa gcaactaacc aaactgctga agctggtggt ggggttggta 2281 acagcactgg cggctttaat aacacaacag aatttaaagt aataaacaat gaagtatata 2341 ttacttgtca cgctactaga atggtacaca tcaaccaagc tgacacagat gaatacttaa 2401 tatttaacgc tggtagaact actgatacaa aaacagctca aaaaaaacta aacttagaat 2461 tttttgtata tgatgatttt caccaacaag taatgacacc ttggttttta gtagatagca 2521 acgcttgggg tgtgtggatg agtcctaaag actttcaaca aatgaaaaca ctgtgtagtg 2581 agattagttt ggttgcttta gaacaagaga tagacaatgt aaccataaag actgtaacag 2641 aaaccaccca aggtaacgca accaccaagc aattcaacaa tgacttaact gcgtcgttac 2701 aggttgcttt agatactaac aacatactgc catatactcc agctgcgccg ttgggggaaa 2761 cactgggctt tgttccttgg agagcaacca aaccaaccca atataggtat tatcatccat 2821 gttacattta caacagatat cctaacattc aaaaaacagg accagaatta gagtggagtg 2881 gaacacaaga tgattacctt agtgtggatg aacagtactt taactttatt actatagaaa 2941 acaacatacc tattaacatt ctcagaacag gagataactt tcactcgggc atatatgaat 3001 ttaaaagtaa accatgtaaa ctaaccttaa gctaccaaag tacacgttgc ttgggtctac 3061 ctcctctctg caaaccaaag acagatgcaa cacacaaagt aacctcacta gaaaacggag 3121 gtgacctaat ttacatagaa ggacaagata ataccagact aggtcacttt tggggtgagg 3181 aaagaggtaa gaagaacgca gaaatgaaca gagttagacc ttacaacata ggtatgcaat 3241 atcctgaatg gataatacca gcagggttac agggtagtta ctttgctgga ggaccacgac 3301 aatggagtga cacaaccaaa ggtgcaggta cacacagtca acagttacaa cagaacttta 3361 gtactagata catttatgac aggaaccacg gtggagacaa cgaggtagac ctattagatg 3421 gaatacccat tcatgaaaga agtaactact actcaaacca tgagatagag caacatacag 3481 caaagcaacc aaagttacat tcagcggcca ttcatcactc aaaaatagac tcatgggaag 3541 aggaaggttg gcctgctgct tcaggcacac actttgaaga tgaggttata tacctagact 3601 actttaactt tagtggtgaa caagaattag agtttccaca tgaagtatta gatgatgctg 3661 ctcaaatgaa aaagctactt aactcatacc aaccaacagt tgctttagac aacgttgggc 3721 ctgtataccc atggggacaa atatgggaca agaaacctga tatggatcac aaacctagca 3781 tgaacaacag tgctccattt gtatgtaaaa acaaccctcc aggtcaactc tttgttaaac 3841 taacagaaaa cctaactgat acatttaact atgatgaaaa tccagacaga ataaaaacct 3901 atggttactt tacttggaga ggcaagcttg tactaaaagg taaactaagc caagtaacat 3961 gctggaatcc tgttaagaga gaactcatag gagaacctgg tgtatttact aaagacaact 4021 atcacaaaca gataccaaac aacaaaggta actttgaaat agggttacaa tatggaagaa 4081 gtactatcaa atatatctac taaagtaacc tgtgtactat gttactatgt tactatgata 4141 atatctcaat aaaagttaca t //