LOCUS KT878961 4169 bp DNA linear VRL 14-FEB-2016 DEFINITION Aleutian mink disease virus strain WM25, complete genome. ACCESSION KT878961 VERSION KT878961.1 KEYWORDS . SOURCE Aleutian mink disease virus ORGANISM Aleutian mink disease virus Viruses; ssDNA viruses; Parvoviridae; Parvovirinae; Amdoparvovirus. REFERENCE 1 (bases 1 to 4169) AUTHORS Canuti,M., O'Leary,K.E., Hunter,B.D., Spearman,G., Ojkic,D., Whitney,H. and Lang,A. TITLE Driving forces behind the evolution of the Aleutian mink disease parvovirus in the context of intensive farming JOURNAL Virus Evol 2 (2016) In press REFERENCE 2 (bases 1 to 4169) AUTHORS Canuti,M., Whitney,H. and Lang,A.S. TITLE Direct Submission JOURNAL Submitted (06-OCT-2015) Biology, Memorial University of Newfoundland, 232 Elizabeth Ave, St John's, NL A1B 3X9, Canada COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4169 /mol_type="genomic DNA" /country="Canada: Newfoundland" /collection_date="2014" /host="Neovison vison" /db_xref="taxon:28314" /strain="WM25" /organism="Aleutian mink disease virus" gene 2..2007 /gene="NS1" CDS join(2..1757,1838..2007) /codon_start=1 /protein_id="AME15905.1" /gene="NS1" /translation="MAQAQLDEQKRLQNLYKQLKKEISDGEGLAWLFQQKTYTDKDNK PTKATPPLRTTSSDLRLAFDSIEETLRASNEHFTNDEINFCKLTLGRTLVTIDKHVKS HRWNADKINFIWQVEKGKTQHFHIHCCLGYFDKNEDPKDVHKSLGWLLKKLNKDLAVI YSNHHCDQQDIKDPEARADNLKVWIEDGPTKPYKYYHKQTKQDYNKPVTLRDYVLIYL FNKDKIHKEGMDGYYAAGNGGLIDNITDKERKTLRKMYLDEQSLDIMDVDIDWEDGQD ALKVTDQTDSATSKTGTSLIWKSCATKVTSKKEVADPVKQPSKKMYSAQSTLDDLFKY GCFTPEDMIITLGDKYLEMSLEPNGPQKINTLLHMNQVKTSTILNAWECIIKFNEPEN DEPLLATIKDMGLNENLLKKALCTILTKQSGKRGCIWFYGPGGTGKTLLASLICKATK NYGMVTTSNPNFPWTDCGNRNIIWTEECGNFGNWVEDFKAITGGGDVKVDTKNKQPQS IKGCVIVTSNTNITKVTVGCVETNAHAEPLKQRMLKIRCMKTINPKTKITPGMLAKWI STWDKTPIKLSHEMPELYLETTGPNFSATSATKTTGNSQPTTAKTAESVSTADCDTPK RGASSVPPKQHKRPRHE" /product="nonstructural protein 1" gene 2..2003 /gene="NS2" CDS join(2..180,1838..2003) /codon_start=1 /protein_id="AME15906.1" /gene="NS2" /translation="MAQAQLDEQKRLQNLYKQLKKEISDGEGLAWLFQQKTYTDKDNK PTKATPPLRTTSSDLRDYWTKLQCHECHEDYWQLTTYYCKDCRKCEHGRLRHTKKGCE QCASEAAQETSA" /product="nonstructural protein 2" gene 2..1617 /gene="NS3" CDS join(2..180,1533..1617) /codon_start=1 /protein_id="AME15907.1" /gene="NS3" /translation="MAQAQLDEQKRLQNLYKQLKKEISDGEGLAWLFQQKTYTDKDNK PTKATPPLRTTSSDLRLCDCNKQHQHNQSNCRMCGNKRSRRAT" /product="nonstructural protein 3" gene 2000..4103 /gene="VP1" CDS join(2000..2009,2083..4103) /codon_start=1 /protein_id="AME15908.1" /gene="VP1" /translation="MSKIPQHYPGKKRSAPRHVFIQQAKKKKQTNPAVYHGEDTIEEM DSAEPEQMDTEQATNQTAEAGGGVGKSTGGFNNTTEFKVINNEVYITCHATRMIHINQ ADTDEYLVFNAGRTTDTKTSQKKLNLEFFVYDDFHQQVLTPWFLVDSNAWGVWMSPKD FQQMKTLCSEISLVTLEQEIDNVTIKTVTETNQGNASTKQFNNDLTASLQVALDTNNI LPYTPAAPLGETLGFVPWRATKPTQYRYYHPCYIYNRYPNIQKTGQELEWTGTQDDYL SVDEQYFNFITIENNIPINILRTGDNFHSGIYEFKSKPCKLTLSYQSTRCLGLPPLCK PKTDRTHKVTSLENGADIIYIEGQDNTRLGHFWGEERGKKNAEMNRVRPYNIGMQYPE WIIPAGLQGSYFAGGPRQWSDTTKGAGTHSQQLQQNFSTRYIYDRNHGGDNEVDLLDG IPIHERSNYYSNHEIEQHTAKQPKLHTPPIHHSKIDSWEEEGWPAASGTHFEDEVIYL DYFNFSGEQELEFPHEVLDDAAQMKKLLNSYQPTVALDNVGPVYPWGQIWDKKPDMDH KPSMNNSAPFVCKNNPPGQLFVKLTENLTDTFNYDENPDRIKTYGYFTWRGKLVLKGK LSQVTCWHPVKRELIGEPGVFGKENYHKQIPNNKGNFEIGLQYGRSTIKYIY" /product="capsid protein 1" gene 2202..4103 /gene="VP2" CDS 2202..4103 /codon_start=1 /protein_id="AME15909.1" /gene="VP2" /translation="MDSAEPEQMDTEQATNQTAEAGGGVGKSTGGFNNTTEFKVINNE VYITCHATRMIHINQADTDEYLVFNAGRTTDTKTSQKKLNLEFFVYDDFHQQVLTPWF LVDSNAWGVWMSPKDFQQMKTLCSEISLVTLEQEIDNVTIKTVTETNQGNASTKQFNN DLTASLQVALDTNNILPYTPAAPLGETLGFVPWRATKPTQYRYYHPCYIYNRYPNIQK TGQELEWTGTQDDYLSVDEQYFNFITIENNIPINILRTGDNFHSGIYEFKSKPCKLTL SYQSTRCLGLPPLCKPKTDRTHKVTSLENGADIIYIEGQDNTRLGHFWGEERGKKNAE MNRVRPYNIGMQYPEWIIPAGLQGSYFAGGPRQWSDTTKGAGTHSQQLQQNFSTRYIY DRNHGGDNEVDLLDGIPIHERSNYYSNHEIEQHTAKQPKLHTPPIHHSKIDSWEEEGW PAASGTHFEDEVIYLDYFNFSGEQELEFPHEVLDDAAQMKKLLNSYQPTVALDNVGPV YPWGQIWDKKPDMDHKPSMNNSAPFVCKNNPPGQLFVKLTENLTDTFNYDENPDRIKT YGYFTWRGKLVLKGKLSQVTCWHPVKRELIGEPGVFGKENYHKQIPNNKGNFEIGLQY GRSTIKYIY" /product="capsid protein 2" ORIGIN 1 catggctcag gctcaacttg atgagcagaa aagactgcag aacctgtaca agcagctgaa 61 aaaggagatc tctgacggtg agggacttgc ttggctattt caacaaaaga cctacaccga 121 caaggacaac aaaccaacca aagcaacacc accactgagg acaacttctt ctgatctaag 181 gttagcattt gattctattg aagagacttt aagagcttct aatgaacact ttactaacga 241 tgagataaac ttttgtaaac taaccttagg aaggacgttg gtaacgattg ataagcatgt 301 aaaaagtcac agatggaatg ctgataaaat taacttcatc tggcaagtag aaaaaggaaa 361 aactcagcac tttcatattc actgttgctt aggttacttt gataagaatg aagatcctaa 421 ggatgttcac aaatccttag gttggttgct taaaaaatta aataaagacc tagcagttat 481 ctatagtaac catcattgtg accaacaaga cattaaggat cctgaggcca gagctgataa 541 tttgaaagtg tggattgaag atgggcctac taaaccttac aaatactatc acaaacaaac 601 caaacaagac tacaacaaac cagttacctt gcgtgactat gtactaatat acctgtttaa 661 caaagataag atacataagg aaggtatgga tggttactat gctgctggta acggtggtct 721 cattgacaac ataactgaca aagaacgaaa gaccttaaga aaaatgtact tggatgaaca 781 gagtttagat ataatggatg ttgatataga ctgggaagat ggccaagacg cgctaaaagt 841 aactgaccaa actgactcag caacctcaaa aacaggaact agtttgattt ggaaatcatg 901 tgcaaccaaa gtaacctcaa agaaagaggt tgctgatcca gttaagcaac cttctaaaaa 961 aatgtactca gctcaaagta ctttagatga tttgtttaaa tatggttgct ttactccaga 1021 agatatgatt ataacactcg gtgacaaata ccttgaaatg tctttggaac caaacggccc 1081 tcaaaaaatt aacactttac ttcacatgaa tcaagtaaaa acatcaacca tacttaatgc 1141 ctgggagtgc attataaaat ttaatgaacc agaaaacgat gaacctttgc tagcaaccat 1201 aaaagacatg ggacttaatg aaaacctact taagaaagca ctatgtacca tcctaaccaa 1261 gcaaagtgga aaaagaggtt gtatttggtt ctatggaccg ggaggtactg gaaagacatt 1321 gctagcatcc ttaatatgta aagcaacaaa gaactatggc atggttacta caagcaaccc 1381 aaactttcca tggactgatt gtggtaatag aaacatcatc tggactgaag agtgtggtaa 1441 ctttggtaac tgggttgaag acttcaaagc cattactgga ggtggtgatg ttaaagtaga 1501 caccaagaac aagcaacctc aatctattaa aggctgtgtg attgtaacaa gcaacaccaa 1561 cataaccaaa gtaactgtcg gatgtgtgga aacaaacgct cacgcagagc cacttaaaca 1621 aagaatgctt aagatacgtt gcatgaaaac catcaaccct aaaaccaaaa taacaccagg 1681 aatgttagca aaatggataa gtacctggga taaaacacca attaaactaa gccatgagat 1741 gcctgaactg tacttaggta agtactttgg taagtaacac atcttaaata ccaactttaa 1801 aaccaacatc aacttataag gttactttac tttacagaga ctactggacc aaacttcagt 1861 gccacgagtg ccacgaagac tactggcaac tcacaaccta ctactgcaaa gactgcagaa 1921 agtgtgagca cggccgactg cgacacacca aaaaggggtg cgagcagtgt gcctccgaag 1981 cagcacaaga gacctcggca tgagtaaaag taagtaacct acttaaagta acttaacacc 2041 ataacacttt actttacttg tacttatgtt actttacttt agttcctcag cactatcctg 2101 ggaaaaagag aagtgctcca agacacgtgt ttatccagca agcaaaaaag aagaagcaaa 2161 ctaaccctgc ggtgtaccac ggagaagaca caatagagga aatggattct gctgaacctg 2221 aacaaatgga cactgagcaa gcaactaacc aaactgctga agctggtggt ggggttggta 2281 aaagcactgg cggctttaat aacacaacag aatttaaagt aataaacaat gaagtatata 2341 ttacttgtca cgctactaga atgatacaca tcaaccaagc tgacacagat gaatacttgg 2401 tatttaacgc tggtagaact actgatacca aaacatctca aaaaaaacta aacttagaat 2461 tttttgtata tgatgatttt caccaacaag tactgacacc ttggttttta gtagatagca 2521 acgcttgggg tgtgtggatg agtcctaaag actttcaaca aatgaaaaca ctgtgtagtg 2581 agattagttt ggttacttta gaacaagaga tagacaatgt aaccataaaa actgtaacag 2641 aaaccaacca aggtaacgca tccaccaaac aattcaacaa tgacttaact gcgtcgttac 2701 aagttgcttt agatactaac aacatactgc catatactcc agctgcgccg ttgggggaaa 2761 cactgggctt tgttccttgg agagcaacca aaccaaccca atataggtat tatcatccat 2821 gttacattta caacagatat cctaacattc aaaaaacagg gcaagaatta gaatggactg 2881 gaacacaaga tgattacctt agtgtagatg aacagtactt taactttatt actatagaaa 2941 acaacatacc tattaacatt ctcagaacag gagataactt tcactctggc atatatgaat 3001 ttaaaagtaa accatgtaaa ctaaccttaa gctaccagag tacacgttgc ttgggtctac 3061 ctcctctttg caaaccaaag acagatagaa cacacaaagt aacctcacta gaaaacggag 3121 ctgacataat ttacatagaa ggacaagaca ataccagact aggtcacttt tggggtgagg 3181 aaagaggtaa gaagaacgca gaaatgaaca gagttagacc ttacaacata ggtatgcaat 3241 atcctgaatg gataatacca gcagggttac agggtagtta ctttgctgga ggaccacgac 3301 aatggagtga cacaaccaaa ggtgcaggta cacacagtca acagttacaa cagaacttta 3361 gtactagata catttatgac aggaaccacg gtggagacaa cgaggtagac ctattagatg 3421 gaatacccat tcatgaaaga agtaactact actcaaacca tgagatagag caacatacag 3481 caaagcaacc aaagttacat acaccgccca ttcatcactc aaagatagac tcatgggaag 3541 aggaaggttg gcctgctgct tcaggcacac actttgaaga tgaggttata tacctagact 3601 actttaactt tagtggtgaa caagaattag agtttccaca tgaagtatta gatgatgctg 3661 ctcaaatgaa aaagctactt aactcatacc aaccaacagt tgctttagac aacgttgggc 3721 ctgtataccc atggggacaa atatgggaca agaaacctga tatggatcac aaacctagca 3781 tgaacaacag tgctccattt gtatgtaaaa acaaccctcc gggtcaactc tttgttaaac 3841 taacagaaaa cctaactgat acatttaact atgatgaaaa tccagacaga ataaaaacct 3901 atggttactt tacttggaga ggcaagcttg tactaaaagg taaactaagc caagtaacat 3961 gctggcatcc tgttaagaga gaactcatag gagaacctgg tgtatttggt aaagaaaact 4021 atcacaaaca aataccaaac aacaaaggta actttgaaat agggttacaa tatggaagaa 4081 gcactatcaa atatatctac taaagtaacc tatgtactat gttactatgt tactatgtta 4141 ctatgatgat atctcaataa aagttacat //