LOCUS KU513987 4369 bp DNA linear VRL 09-MAY-2016 DEFINITION Aleutian mink disease virus isolate G#3, complete genome. ACCESSION KU513987 VERSION KU513987.1 KEYWORDS . SOURCE Aleutian mink disease virus (AMDV) ORGANISM Aleutian mink disease virus Viruses; ssDNA viruses; Parvoviridae; Parvovirinae; Amdoparvovirus. REFERENCE 1 (bases 1 to 4369) AUTHORS Hagberg,E.E., Krarup,A., Fahnoe,U., Larsen,L.E., Dam-Tuxen,R. and Pedersen,A.G. TITLE A fast and robust method for whole genome sequencing of the Aleutian Mink Disease Virus (AMDV) genome JOURNAL J. Virol. Methods 234, 43-51 (2016) PUBMED 27060623 REFERENCE 2 (bases 1 to 4369) AUTHORS Hagberg,E.E., Fahnoe,U., Larsen,L.E., Dam-Tuxen,R., Pedersen,A.G. and Krarup,A. TITLE Direct Submission JOURNAL Submitted (12-JAN-2016) Kopenhagen Diagnostics, Kopenhagen Fur, Langagervej 74, Glostrup, Copenhagen 2600, Denmark COMMENT ##Assembly-Data-START## Assembly Method :: bwa v. 0.7.7; RC454 v. 1 Assembly Name :: AMDV Coverage :: 5000 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4369 /mol_type="genomic DNA" /country="Denmark" /isolation_source="cell culture" /collection_date="2012" /note="acronym: AMDV" /db_xref="taxon:28314" /isolate="G#3" /organism="Aleutian mink disease virus" gene 109..2114 /gene="NS1" CDS join(109..1864,1945..2114) /codon_start=1 /protein_id="ANC57655.1" /gene="NS1" /translation="MAQAQIDEQRRLQDLYVQLKKEINDGEGVAWLFQQKTYTDKDNK PTKATPPLRTTSSDLRLAFDSIEENLTASNEHLTNNEINFCKLTLGKTLLLIDKHVKS HRWDSNKVNLIWQIEKGKTQQFHIHCCLGYFDKNEDPKDVQKSLGWFMKRLNKDLAVI YSNHHCDIQDIKDPEDRAKNLKVWIEDGPTKPYKYFNKQTKQDYNKPVHLRDYTFIYL FNKDKINTDSMDGYFAAGNGGIVDNLTNKERKTLRKMYLDEQSSDIMDANIDWEDSQD APKVTDQTDSATTKTGTSLIWKSCATKVTSKKDVANPVQQPSKKLYSAQSTLDALFNV GCFTPEDMIIKQSDKYLELSLEPNGPQKINTLLHMNQVKTSTMITAFDCIIKFNEEED DKPLLATIKDMGLNEQYLKKVLCTILTKQGGKRGCIWLYGPGGTGKTLLASLICKATV NYGMVTTSNPNFPWTDCGNRNIIWAEECGNFGNWVEDFKAITGGGDVKVDTKNKQPQS IKGCVIVTSNTNITKVTVGCVETNAHAEPLKQRMIKIRCMKTINPKTKITPGMLKRWL NTWDRQPIQLSHEMPELYLETTGPNSSATTATKNTGNSQPTTAKSAESVNTENYDTPK RSASSVPAKQHKRPRHE" /product="nonstructural protein 1" gene 109..2110 /gene="NS2" CDS join(109..287,1945..2110) /codon_start=1 /protein_id="ANC57656.1" /gene="NS2" /translation="MAQAQIDEQRRLQDLYVQLKKEINDGEGVAWLFQQKTYTDKDNK PTKATPPLRTTSSDLRDYWTKLECHNCHEEYWQLTTYYCKECRKCEHGKLRHTKKECE QCACKAAQETSA" /product="nonstructural protein 2" gene 109..1724 /gene="NS3" CDS join(109..287,1640..1724) /codon_start=1 /protein_id="ANC57657.1" /gene="NS3" /translation="MAQAQIDEQRRLQDLYVQLKKEINDGEGVAWLFQQKTYTDKDNK PTKATPPLRTTSSDLRLCDCNKQHQHNQSNCWMCGNKRSRRAT" /product="nonstructural protein 3" gene 2107..4252 /gene="VP1" CDS join(2107..2116,2190..4252) /codon_start=1 /protein_id="ANC57658.1" /gene="VP1" /translation="MSKIPQHYPGKKRSAPRHVFIQQAKKKKQTNPAVYHGEDTIEEM DSTEAEQMDTEQATNQTAEAGGGGGGGGGGGGGGGGVGNSTGGFNNTTEFKVINNEVY ITCHATRMVHINQADTDEYLIFNAGRTTDTQTHQQKLNLEFFVYDDFHQQVMTPWYIV DSNAWGVWMSPKDFQQMKTLCSEISLVTLEQEIDNVTIKTVTETNQGNASTKQFNNDL TASLQVALDTNNILPYTPAAPLGETLGFVPWRATKPTQYRYYHPCYIYNRYPNIQKVA TETLTWDAVQDDYLSVDEQYFNFITIENNIPINILRTGDNFHTGLYEFNSKPCKLTLS YQSTRCLGLPPLCKPKTDTTHKVTSKENGADLIYIQGQDNTRLGHFWGEERGKKNAEM NRIRPYNIGYQYPEWIIPAGLQGSYFAGGPRQWSDTTKGAGTHSQNLQQNFSTRYIYD RNHGGDNEVDLLDGIPIHERSNYISDNEIEQHTAKQPKLRTPPIHHSKIDSWEEEGWP AASGTHFEDEVIYLDYFNFSGEQELNFPHEVLDDAAQMKKLLNSYQPTVAQDNVGPVY PWGQIWDKKPHMDHKPSMNNNAPFVCKNNPPGQLFVKLTENLTDTFNYDEDPDRIKTY GYFTWRGKLVLKGKLSQVTCWNPVKRELIGEPGVFTKDKYHKQIPNNKGNFEIGLQYG RSTIKYIY" /product="capsid protein 1" gene 2309..4252 /gene="VP2" CDS 2309..4252 /codon_start=1 /protein_id="ANC57659.1" /gene="VP2" /translation="MDSTEAEQMDTEQATNQTAEAGGGGGGGGGGGGGGGGVGNSTGG FNNTTEFKVINNEVYITCHATRMVHINQADTDEYLIFNAGRTTDTQTHQQKLNLEFFV YDDFHQQVMTPWYIVDSNAWGVWMSPKDFQQMKTLCSEISLVTLEQEIDNVTIKTVTE TNQGNASTKQFNNDLTASLQVALDTNNILPYTPAAPLGETLGFVPWRATKPTQYRYYH PCYIYNRYPNIQKVATETLTWDAVQDDYLSVDEQYFNFITIENNIPINILRTGDNFHT GLYEFNSKPCKLTLSYQSTRCLGLPPLCKPKTDTTHKVTSKENGADLIYIQGQDNTRL GHFWGEERGKKNAEMNRIRPYNIGYQYPEWIIPAGLQGSYFAGGPRQWSDTTKGAGTH SQNLQQNFSTRYIYDRNHGGDNEVDLLDGIPIHERSNYISDNEIEQHTAKQPKLRTPP IHHSKIDSWEEEGWPAASGTHFEDEVIYLDYFNFSGEQELNFPHEVLDDAAQMKKLLN SYQPTVAQDNVGPVYPWGQIWDKKPHMDHKPSMNNNAPFVCKNNPPGQLFVKLTENLT DTFNYDEDPDRIKTYGYFTWRGKLVLKGKLSQVTCWNPVKRELIGEPGVFTKDKYHKQ IPNNKGNFEIGLQYGRSTIKYIY" /product="capsid protein 2" ORIGIN 1 atattggttg agaattaatc cgtgtctttc ctgtggaatg aggaagtagt gtggtatata 61 agcagaggtt gcttggagca aggcacagac cggttacagc aaagtaacat ggctcaggct 121 caaattgatg agcagaggag actgcaggac ctgtatgtgc agttgaagaa ggagattaac 181 gacggtgaag gagttgcctg gttgttccaa caaaagacct acaccgacaa ggacaacaaa 241 ccaaccaaag caacaccgcc actgaggaca acctcttctg acctaaggtt agcttttgac 301 tctattgaag agaatttaac agcttctaat gaacacttaa ctaacaatga gataaacttt 361 tgtaaactaa ccttggggaa gacgttgctg ttaattgata agcatgtaaa aagccacaga 421 tgggatagta acaaagttaa cttaatttgg caaatagaaa aaggaaaaac tcagcaattt 481 catattcact gttgcttagg ttactttgat aagaatgaag atcctaagga tgttcaaaaa 541 tccttaggtt ggtttatgaa aagactaaat aaagacctag cagttatcta tagtaaccat 601 cattgtgaca tacaagatat taaggatcct gaagatagag ctaagaacct aaaagtgtgg 661 attgaagatg gacctactaa gccttacaaa tattttaaca aacaaaccaa acaagactac 721 aataaaccag ttcacttgag agactataca ttcatatacc tgtttaacaa agataagata 781 aatacagata gtatggatgg ttactttgct gctggtaacg gtggcattgt tgacaaccta 841 actaacaaag aacgaaaaac tttaagaaaa atgtacttag atgagcagag ttcagatata 901 atggatgcta atatagactg ggaagatagc caagacgcgc caaaagtaac tgaccaaact 961 gactcagcaa ccacaaaaac aggaactagt ttgatttgga aatcatgtgc tactaaagta 1021 acctcaaaaa aagacgttgc taatccagtt cagcaaccgt ctaaaaaact gtactcagct 1081 caaagtactt tagatgcatt gtttaacgtt ggttgcttta ctccagaaga tatgattata 1141 aagcaaagtg acaaatacct tgaactatct ttagaaccaa acgggcctca aaaaattaac 1201 actttacttc acatgaacca agtaaagaca tcaaccatga ttactgcttt tgattgtatt 1261 ataaaattta atgaagagga agatgacaaa cctttgctag caactataaa agacatggga 1321 cttaatgaac aataccttaa gaaggtacta tgtaccatcc taaccaagca aggtggaaag 1381 agaggttgta tttggctcta tggaccgggg ggcactggaa aaaccttgct agcatcttta 1441 atatgtaaag caacagtaaa ctatggtatg gttactacaa gcaatccaaa ctttccatgg 1501 actgactgtg gcaatagaaa catcatttgg gctgaagagt gtggtaactt tggtaactgg 1561 gttgaagact ttaaagccat tactggaggt ggtgatgtaa aagtagacac caagaacaag 1621 caacctcaat ctattaaagg ctgtgtgatt gtaacaagca acaccaacat aaccaaagta 1681 actgttggat gtgtggaaac aaacgctcac gcagagccac ttaaacagag gatgattaag 1741 atacgttgca tgaaaaccat caaccctaaa actaaaataa caccaggcat gttaaaaaga 1801 tggctaaata cctgggatag acaaccaatt caactaagcc atgagatgcc tgaactgtac 1861 ttaggtaagt gccgttggta agtaacacat tttaaatgcc aactttaaac caacatcaat 1921 ttatgaggtt actttacttt acagagacta ctggaccaaa ctcgagtgcc acaactgcca 1981 cgaagaatac tggcaactca caacctacta ctgcaaagag tgcagaaagt gtgaacacgg 2041 aaaactacga cacaccaaaa aggagtgcga gcagtgtgcc tgcaaagcag cacaagagac 2101 ctcggcatga gtaaaagtaa gtaacctact taaagtaacc taacaccata acactttact 2161 ttccttgtac ttatgttact ttactttagt tcctcagcac tatcctggga aaaagagaag 2221 tgctccaaga cacgtgttta ttcagcaagc aaaaaagaag aagcaaacta accctgcggt 2281 ctaccacgga gaggacacca tagaggaaat ggattctact gaagctgaac aaatggacac 2341 tgagcaagca actaaccaaa ctgctgaagc tggtggtggg gggggtgggg gtggtggggg 2401 tggtggtggt ggtggtgggg ttggtaacag cactggcggc tttaataaca caacagaatt 2461 caaagtaata aacaatgaag tgtatattac ttgtcacgct actagaatgg tacacattaa 2521 ccaagctgac acagacgaat acttgatatt taatgctggt agaactactg atacccaaac 2581 acatcagcaa aaactaaact tagaattttt tgtatatgat gattttcacc aacaagtaat 2641 gacaccttgg tatatagtag atagcaacgc ttggggtgta tggatgagtc ctaaagactt 2701 tcaacaaatg aaaacactgt gtagtgaaat tagtttggtt actttggaac aagaaataga 2761 caatgtaacc ataaaaactg taacagaaac caaccaaggt aacgcatcta ccaagcaatt 2821 caacaatgac ttaactgcgt cgttacaggt tgctttagat actaacaaca tactgccata 2881 tactccagct gcgccgttgg gggaaacact gggctttgtt ccttggagag caaccaaacc 2941 aacccaatat aggtattatc atccatgtta catttacaac agatatccta acattcaaaa 3001 agttgcaaca gaaacactaa cctgggatgc agtacaagat gattacctta gtgtggatga 3061 acagtacttt aactttatta ctatagagaa caacatacct attaacattc tcagaacggg 3121 agataacttt catacaggct tgtatgagtt taacagtaaa ccatgtaaac taaccttaag 3181 ctatcaaagt acacgttgct tggggctacc tcctctctgc aaaccaaaga cagatacaac 3241 acacaaagta acctcaaaag aaaacggagc tgacctaatt tacatacaag gacaagataa 3301 taccagacta ggtcactttt ggggtgagga aagaggtaag aaaaacgcag agatgaacag 3361 aattagacct tacaacatag gttaccaata tcctgaatgg ataataccag cagggttaca 3421 gggtagttac tttgctggag gaccaagaca gtggagtgac acaaccaaag gtgcaggtac 3481 acacagtcag aacttacaac agaactttag tactaggtac atctatgaca gaaaccacgg 3541 tggagacaac gaggtagacc tattagatgg aatacccatt catgaaagaa gtaactatat 3601 ttcagacaat gagatagagc aacatacagc aaagcaacca aagttacgta caccacccat 3661 tcaccactca aaaatagact cgtgggaaga agaaggttgg cctgctgctt caggcacaca 3721 ctttgaagat gaggttatat acctagacta ctttaacttt agtggtgaac aggagctaaa 3781 ctttccacat gaagtattag atgatgctgc tcagatgaaa aagctactta actcatacca 3841 accaacagtt gctcaagaca acgttggtcc tgtataccca tggggacaga tatgggacaa 3901 gaaacctcat atggatcaca aacctagcat gaacaacaac gctccatttg tatgtaaaaa 3961 caaccctcca ggtcaactct ttgttaaact aacagaaaac ctcactgata catttaacta 4021 tgatgaagat ccagacagaa taaaaaccta tggttacttt acttggagag gcaagcttgt 4081 actaaaaggc aaactaagcc aagtaacatg ctggaatcct gttaagagag aactcatagg 4141 agaacctggt gtatttacta aagacaagta tcacaaacag ataccaaaca acaaaggtaa 4201 ctttgaaata gggttacaat atggaagaag tactatcaaa tatatctact aaagtaacct 4261 gtgtactatg ttactatgtt actatgataa tatctcaata aaagttacat gaatagtgaa 4321 caacctaaat actgtgtact tccttatttt accagaaagt ggcggatta //