LOCUS NC_029993 5726 bp RNA linear VRL 29-APR-2016 DEFINITION Alfalfa enamovirus-1 isolate Manfredi, complete genome. ACCESSION NC_029993 VERSION NC_029993.1 DBSOURCE BioProject accession PRJNA320120 KEYWORDS RefSeq. SOURCE Alfalfa enamovirus 1 ORGANISM Alfalfa enamovirus 1 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae; Enamovirus. REFERENCE 1 (bases 1 to 5726) AUTHORS Bejerman,N., Giolitti,F., Trucco,V., de Breuil,S., Dietzgen,R.G. and Lenardon,S. TITLE Complete genome sequence of a new enamovirus from Argentina infecting alfalfa plants showing dwarfism symptoms JOURNAL Arch. Virol. 161 (7), 2029-2032 (2016) PUBMED 27068164 REFERENCE 2 (bases 1 to 5726) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-APR-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5726) AUTHORS Bejerman,N., Giolitti,F., Trucco,V., de Breuil,S., Dietzgen,R.G. and Lenardon,S. TITLE Direct Submission JOURNAL Submitted (10-DEC-2015) Phytovirology, IPAVE-CIAP-INTA, Camino a 60 Cuadras km 5 y 1/2, Cordoba 5000, Argentina COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KU297983. ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..5726 /mol_type="genomic RNA" /country="Argentina" /collected_by="Nicolas Bejerman" /collection_date="11-Sep-2010" /host="alfalfa" /db_xref="taxon:1770265" /isolate="Manfredi" /organism="Alfalfa enamovirus 1" 5'UTR 1..180 gene 181..1092 /locus_tag="A6774_gp1" /db_xref="GeneID:27429659" CDS 181..1092 /locus_tag="A6774_gp1" /db_xref="GeneID:27429659" /codon_start=1 /protein_id="YP_009249822.1" /translation="MNAVEQPQLPLAYALRISSVAFLINSLDGLHAEARELNGPLALV TSSYYLLVSIALCWAHPGSFWYRPGCWLQPLPGRNLILCGPAAVLRRFRLYAARLGLV LCEDSSRGEGATSISLQSYWALPNNIWMDMAQLDLLTFAMPLANLFAFLAGGQARHPP FVEGVGSAYYIPTLLGVTDQDSRLYLALRRRNSYLGRNPDRARPGVLESMAVLCTLVR RPGIARQVLTLHGGPINRVLGLAEEDRIIFGAADNHTSYNNQVSQFDRDRTNQSLFSV DLEHLNDLELNAMGYDSEGDEDFDDYF" /product="hypothetical 34K protein" gene 263..3819 /locus_tag="A6774_gp2" /db_xref="GeneID:27429655" CDS join(263..2041,2041..3819) /locus_tag="A6774_gp2" /protein_id="YP_009249823.1" /db_xref="GeneID:27429655" /ribosomal_slippage /codon_start=1 /product="RNA-dependent RNA polymerase" /translation="MAYMQKPESSMGPWPLLLLAIICSFLLPSAGHTLGRSGTDPAVG CSLSQGETSSSADLPQFCADFGYMPPDLDWSYVKTVQGVREQPQYPSNHTGPFQTISG WTWPNWTCSPLQCHLQIYLPSWQVVRQDILHLLKVWDLLTIYQRCSELLTRTPGYILR FAGETLILVATLIEHVLVYWNLWLYSVLLYVVQALPGRFLLYMGALSIVSWVWPKKTA SYLVQLTTTPLITIRYLNSTGIALISLCLAWTWNTLMTWSLMPWVMIVKVMRTLMIIS RFFVRERGSKKKKVSSKSYKAKLKVARSVQRKKGSQKKTPVEERTIPGVQIKKLREDP PKGVILRCTDQFGDHVGYASAVKLEKGLTGIVLPIHVWADSVFITGPNGKMKMADFSA LYECIPHDSLIMTSAVNGWGSKLGVRPRPLATIEAVKLKNYSLFTERDGKWLVQAAKL IAPAEGMFRVVSETAPGDSGLPLFDMKMNVVAVHRGTWPAEKFPENRAFAILPVPDLK TPSSPKFTGCETFSETESAYDMAEGFSDGEEVVVKTKGKAYKTFIGLNRVATLSETAL REELSRGPIGVWADIEDDESAPKRSGNWTKPVDSGETKSCEEDLSKGRGVSSTLPRPC KRRGRKAKAPQAVRNDPRTEESRQPKEEEVKSCQEDSNPKEDPGQGTYTVPSGRISRE GCQSSPYSAATKISSIFEGFYRWKEPREEAPGFNAVGSCPFTVYKCPPKGLSRWGERV ARASSFLQACTEKYSWPETGAEAELSSLRYQAARRQSAQTTAVIPPKDVREDLIKRTT EAYRSTALPAPMWAHNFDESHMRFEFWECVRKLKGQAGSGVPYAAFSNRRTNDKWVFD HESTEDLWETVRDRLFRLLNGEFIDPVQAVKDGLVDPIRLFVKLEPHKMEKIRNKRYR LIASVSIVDQLVARMLFREQNEEELLQHMAIPSKPGLGFSQDRQVLAFTESVAALAGT TADDLVENWSRYLTPTDCSGFDWSVPMWLLEDDLAVRNELTLGLPYGLRKMRETWLKC LGQSVFCLSNGLLLAQTSPGIQKSGSFNTSSTNSRMRYMLALYAGADWAVTMGDDALE SVNSDLSQYARLGIKCERAEEFDFCSHLFRAPDVIIPKNLEKMVYGLLSGTSPESPLL ADRFCWLASLQSILEEMRHMPQEFVDMLIEHLGVGHLVE" gene 263..2557 /locus_tag="A6774_gp3" /db_xref="GeneID:27429656" CDS 263..2557 /locus_tag="A6774_gp3" /db_xref="GeneID:27429656" /codon_start=1 /protein_id="YP_009249824.1" /translation="MAYMQKPESSMGPWPLLLLAIICSFLLPSAGHTLGRSGTDPAVG CSLSQGETSSSADLPQFCADFGYMPPDLDWSYVKTVQGVREQPQYPSNHTGPFQTISG WTWPNWTCSPLQCHLQIYLPSWQVVRQDILHLLKVWDLLTIYQRCSELLTRTPGYILR FAGETLILVATLIEHVLVYWNLWLYSVLLYVVQALPGRFLLYMGALSIVSWVWPKKTA SYLVQLTTTPLITIRYLNSTGIALISLCLAWTWNTLMTWSLMPWVMIVKVMRTLMIIS RFFVRERGSKKKKVSSKSYKAKLKVARSVQRKKGSQKKTPVEERTIPGVQIKKLREDP PKGVILRCTDQFGDHVGYASAVKLEKGLTGIVLPIHVWADSVFITGPNGKMKMADFSA LYECIPHDSLIMTSAVNGWGSKLGVRPRPLATIEAVKLKNYSLFTERDGKWLVQAAKL IAPAEGMFRVVSETAPGDSGLPLFDMKMNVVAVHRGTWPAEKFPENRAFAILPVPDLK TPSSPKFTGCETFSETESAYDMAEGFSDGEEVVVKTKGKAYKTFIGLNRVATLSETAL REELSRGPIGVWADIEDDESAPKRSGNGPNRSTPVKQSHAKKTSPKVEESAAPSPAPV KEEGEKRRHLKRSEMTPEQRKADNLRRRKSKAAKKTPTPKKTQAKAPTLSQVAELVEK AVKAALTVRPRRSRVSSRVSTGGKNQGRKPQDSTRSDPAPSPSTSVLRKDSQDGGSVW LGPRRSFRPVQKSTAGQKQEPRRN" /product="hypothetical protein" gene 4031..5509 /locus_tag="A6774_gp4" /db_xref="GeneID:27429657" CDS 4031..5509 /locus_tag="A6774_gp4" /protein_id="YP_009249825.1" /db_xref="GeneID:27429657" /codon_start=1 /product="aphid transmission protein" /translation="MPTKSKAPQRRRRQPKRKAVVADLVVQPRARPRRPRRRRNRRGS GQNGSHTVDFSMVHGPFNGNSTGTIKFGPSSDCQCVKGNLNAYQKYRITWLKVVYQSE AASTDRGCIAYHVDTSTTKRATDVVLLDTWNVRSNGSATFGREILGDQPWYESNKDQF NFLYRGTGGSDVAGHFRINGKIQLMNASLXGDDAPPSPGPDPGPPPPPPPSPAPKGAR FWGYEGTPELRIISERNDNFIDVKSLSTVRLFKWEDENWSTVTLSAAYIKNDRSEAIP YFLIPSSKGSFSVYIECEGFQAVKHIGGTADGCWCGLVAYDRSKDGWAARMYSGCNIT NYRASSTTVGGHPDAELNDCKFRPERCVESDFSCSFHMECEDDGYWALQAPPIQKSND YNYIVSYGNYTEKVLEWGTVSISIDEVNSNGTASPRSLRGRPRKPVVLQETAVPPPIP PGGAMDCPVGNREDDQTGTYGSRPLRRSNPRWDPFGSRNPWS" /transl_except=(pos:4598..4600,aa:OTHER) gene 4031..4600 /locus_tag="A6774_gp5" /db_xref="GeneID:27429658" CDS 4031..4600 /locus_tag="A6774_gp5" /db_xref="GeneID:27429658" /codon_start=1 /protein_id="YP_009249826.1" /translation="MPTKSKAPQRRRRQPKRKAVVADLVVQPRARPRRPRRRRNRRGS GQNGSHTVDFSMVHGPFNGNSTGTIKFGPSSDCQCVKGNLNAYQKYRITWLKVVYQSE AASTDRGCIAYHVDTSTTKRATDVVLLDTWNVRSNGSATFGREILGDQPWYESNKDQF NFLYRGTGGSDVAGHFRINGKIQLMNASL" /product="coat protein" 3'UTR 5510..5726 ORIGIN 1 tgaaagttaa gtaagaaagc tccccagcat tccttttctt tccttatatg ctcatcagat 61 tgatttccct tttcgctgaa gtcacttgca tctgtataat ctacacattt gttgtgttca 121 ttgctacagt ctttgcattc ttagctatcg aggacgccta taaacgccgc ctctagtttt 181 atgaacgctg ttgagcaacc tcaactaccg ctagcatacg ctctccgcat atcatctgtt 241 gccttcttaa tcaattctct agatggccta catgcagaag cccgagagct caatgggccc 301 ttggcccttg ttacttctag ctattatctg ctcgtttcta ttgccctctg ctgggcacac 361 cctgggtcgt tctggtacag acccggctgt tggttgcagc ctctcccagg gagaaacctc 421 atcctctgcg gacctgccgc agttctgcgc cgatttcggc tatatgccgc cagacttgga 481 ctggtcttat gtgaagacag ttcaaggggt gagggagcaa cctcaatatc cctccaatca 541 tactgggccc ttccaaacaa tatctggatg gacatggccc aattggacct gctcaccttt 601 gcaatgccac ttgcaaattt atttgccttc ttggcaggtg gtcaggcaag acatcctcca 661 tttgttgaag gtgtgggatc tgcttactat ataccaacgc tgctcggagt tactgaccag 721 gactccaggt tatatcttgc gcttcgcagg agaaactctt atcttggtcg caaccctgat 781 agagcacgtc ctggtgtatt ggaatctatg gctgtactct gtactcttgt acgtcgtcca 841 ggcattgcca ggcaggttct tactttacat gggggcccta tcaatcgtgt cttgggtttg 901 gccgaagaag accgcatcat atttggtgca gctgacaacc acacctctta taacaatcag 961 gtatctcaat tcgaccggga tcgcactaat cagtctctgt ttagcgtgga cctggaacac 1021 cttaatgacc tggagcttaa tgccatgggt tatgatagtg aaggtgatga ggactttgat 1081 gattatttct aggttctttg tcagagagag aggctcaaag aagaagaaag tctcctccaa 1141 gtcctacaag gccaaattaa aggttgcacg ctctgtgcag aggaagaagg ggtctcagaa 1201 gaagaccccc gttgaggaaa ggacgatccc cggcgtccag ataaagaaac tccgggaaga 1261 ccccccaaaa ggggttattc tccgctgcac tgaccagttt ggagaccatg tgggctatgc 1321 ctctgctgta aagctggaga agggcctaac aggaattgtg ctacccatcc atgtgtgggc 1381 cgattccgtg tttatcactg gtcccaatgg caagatgaag atggctgact tttcagccct 1441 ttatgagtgc atcccccatg attcccttat catgacctct gctgtgaatg gctggggctc 1501 caaacttgga gttcgcccta ggccacttgc caccattgag gctgtaaagc tcaagaacta 1561 ttccctcttt actgagcggg atgggaaatg gttggtacag gcggccaaac taattgcgcc 1621 agctgaggga atgttccggg tggtttctga gactgcccca ggtgattctg gactgcccct 1681 gttcgacatg aaaatgaatg tcgtagcagt ccatagagga acatggccag cggaaaaatt 1741 tcctgagaac agggcgtttg caatcctacc tgttccggac ctcaaaaccc cctcctctcc 1801 caagttcact ggttgtgaaa ctttcagtga gaccgaatcg gcctatgata tggctgaggg 1861 tttctctgat ggagaagaag tggtggttaa gaccaagggt aaagcctaca agaccttcat 1921 aggtctcaat agagtggcaa ccctgtctga gactgccctc agggaagaat tatcaagagg 1981 tcctattgga gtgtgggcgg acattgaaga cgatgagtct gcccccaagc gctcgggaaa 2041 tggaccaaac cggtcgactc cggtgaaaca aagtcatgcg aagaagacct ctccaaaggt 2101 agaggagtca gcagcaccct cccccgcccc tgtaaaagaa gagggcgaaa agcgaaggca 2161 cctcaagcgg tcagaaatga ccccagaaca gaggaaagcc gacaacctaa ggaggaggaa 2221 gtcaaaagct gccaagaaga ctccaacccc aaagaagacc caggccaagg cacctacact 2281 gtcccaagtg gcagaattag tagagaaggc tgtcaaagca gcccttacag tgcggccacg 2341 aagatctcga gtatcttcga gggtttctac aggtggaaag aaccaaggga ggaagcccca 2401 ggattcaacg cggtcggatc ctgccccttc accgtctaca agtgtcctcc gaaaggactc 2461 tcaagatggg gggagcgtgt ggctagggcc tcgtcgttcc ttcaggcctg tacagaaaag 2521 tacagctggc cagaaacagg agccgaggcg gaactaagtt cccttcgcta ccaagcagcc 2581 cgtcggcaat ctgcacaaac aactgccgtc atccccccca aagacgtgag ggaggatctg 2641 attaaacgca ctactgaggc ctataggtcg acagccttac cggcccccat gtgggcccac 2701 aactttgacg agagtcacat gcgctttgaa ttctgggagt gcgtgcggaa actcaaaggt 2761 caagctggta gcggcgttcc gtatgctgct ttctcaaacc ggcggaccaa tgacaaatgg 2821 gttttcgacc atgagtccac tgaggacttg tgggagaccg tcagagatag gctgttccgt 2881 ctcttgaacg gggaatttat cgaccctgta caagctgtga aagacggcct cgtagatcca 2941 atccggcttt tcgtcaagct ggaaccacat aagatggaga agattcgtaa caagcgttac 3001 agattaatcg cttctgtctc cattgttgat caattggtag ccaggatgct cttccgtgaa 3061 caaaacgaag aggagctcct ccaacacatg gctatcccct ctaaacctgg tcttgggttc 3121 tcacaggacc gccaggtatt ggcgttcacc gagtcggttg ccgctctagc tggcaccaca 3181 gctgatgact tggttgagaa ttggtcaagg tacctcaccc ccaccgactg ctcggggttt 3241 gattggtctg taccaatgtg gttattggaa gatgatctag cagtcaggaa tgagctcacc 3301 ctagggctcc cctatggcct gcgcaagatg cgcgagacat ggctgaaatg cctaggacaa 3361 tcggtcttct gtctctcaaa tggccttttg ctcgcccaaa cctcaccagg aatccaaaag 3421 agtgggagtt ttaatacttc ctcaaccaac tctaggatga ggtatatgtt ggccctctat 3481 gcaggagctg actgggctgt cacaatgggg gacgatgcct tagagtctgt gaactcagac 3541 ctttcccagt atgcgcggct gggtatcaaa tgcgagcgag cggaggagtt cgacttctgc 3601 tcccaccttt tccgcgcccc cgacgttatc atccccaaga acctggagaa aatggtttac 3661 gggttgctga gtgggacttc accagagtcc cccctactgg cggacaggtt ctgctggtta 3721 gcttcccttc aatcaatctt ggaggagatg agacatatgc cccaggaatt tgttgacatg 3781 ctaatagagc atcttggggt cgggcacctc gtcgagtgat ctccgaggta gaaccaggga 3841 tgccgggtat ttcgcgcagt aataagtcgt gttatgccta ccatgaatag acatggtgtt 3901 agtccgaaat gacggtaaac tagagaccgc tcaggagcgg tgaatataaa taccgggttt 3961 agtacttggg accctcctta tccaagtgaa aattagataa ggaaaatcta gtacccctcc 4021 cagagtgata atgccgacga agtcgaaagc acctcaaaga aggaggagac aacccaagag 4081 aaaggctgtg gtggctgatc ttgtggtaca acctagggct aggccacgtc gccccaggcg 4141 aagaagaaac aggcgtggtt cagggcagaa tggctcacat accgttgatt tctcgatggt 4201 acatgggccg ttcaatggca attccactgg cacaatcaag ttcggaccct catccgattg 4261 ccagtgcgtg aaaggaaatc tgaatgccta ccaaaagtac aggataacat ggttgaaggt 4321 tgtttatcaa tctgaagctg catctactga ccgcggatgt attgcttatc acgtggatac 4381 gtccacaacc aagagggcca ctgatgtagt gttgctagat acctggaacg ttcgttccaa 4441 tggttcggcc accttcggtc gcgaaattct tggtgatcaa ccatggtacg agtccaacaa 4501 ggaccagttt aacttcttgt acagaggcac aggtggatcc gatgttgctg ggcatttccg 4561 aattaacggg aagatccagc tcatgaatgc ctccctctga ggggacgacg ctcccccgtc 4621 accagggccc gatcccgggc ccccaccacc accaccccca agccccgctc caaaaggagc 4681 gcggttctgg ggctacgaag ggacaccaga actccgtata atctctgaga ggaacgacaa 4741 cttcattgat gttaagagcc tctcgacggt aaggttgttc aagtgggagg atgagaattg 4801 gtctactgtg accctctccg ccgcttacat caagaatgac cgctcggagg ccatcccgta 4861 tttcctgata ccgagtagca aggggagctt ttccgtttat attgaatgtg aagggttcca 4921 agcagtgaaa catatcgggg gaacggctga tggttgttgg tgtggactcg tggcctatga 4981 tcggagcaaa gatggatggg ctgccaggat gtactctggg tgtaacatta ccaactatag 5041 ggcttctagc actactgttg gtggacatcc ggatgccgaa ctgaacgatt gcaagttcag 5101 gcctgagcgc tgtgtggaga gtgacttctc gtgctcattt cacatggagt gtgaagacga 5161 tggatattgg gctttgcaag cccccccaat ccaaaagtcc aacgattaca attatattgt 5221 ttcgtatggc aactacactg aaaaggtgtt agaatggggt accgtctcta tctctattga 5281 tgaagtgaat agcaacggga cagcgtcgcc gaggtccttg aggggaaggc ctcgaaaacc 5341 ggtggttctg caggagactg cagttccacc accgatcccc cccggggggg ctatggattg 5401 tccagtggga aaccgcgagg atgatcaaac cggcacctat ggaagtagac ctcttagacg 5461 gtcgaaccct aggtgggatc cttttgggtc cagaaatcct tggtcttaat aacacccggg 5521 tcagctgccc tctggctgtg agttggggag ccatgtcaag tagtgtacct tcgggtcacg 5581 aaaagtcact gggctataac tatgtgctaa aagagggccg acaaccctcc ggttcctttc 5641 catattgttt agtatggtct ggaattacct gtcgttaaag tggtagtgca tgcttataga 5701 aatacgtttc tataagtatg tatcgc //