LOCUS HQ316635 3643 bp ss-RNA linear VRL 27-OCT-2010 DEFINITION Alfalfa mosaic virus strain HZ segment RNA1, complete sequence. ACCESSION HQ316635 VERSION HQ316635.1 KEYWORDS . SOURCE Alfalfa mosaic virus ORGANISM Alfalfa mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae; Alfamovirus. REFERENCE 1 (bases 1 to 3643) AUTHORS Jin,L., Qin,Z. and Chen,J. TITLE The complete sequence of Alfalfa mosaic virus isolate from China JOURNAL Unpublished REFERENCE 2 (bases 1 to 3643) AUTHORS Jin,L., Qin,Z. and Chen,J. TITLE Direct Submission JOURNAL Submitted (27-SEP-2010) Institute of Bioengineering, Zhejiang Sci-Tech University, Xiasha 2# Road, Hangzhou, Zhejiang 310018, China COMMENT GenBank Accession Numbers HQ316635-HQ316637 represent the complete genome of Alfalfa mosaic virus strain HZ. FEATURES Location/Qualifiers source 1..3643 /mol_type="genomic RNA" /country="China" /lab_host="Nicotiana glutinosa" /segment="RNA1" /collection_date="Oct-2009" /db_xref="taxon:12321" /strain="HZ" /organism="Alfalfa mosaic virus" CDS 100..3480 /codon_start=1 /protein_id="ADO85715.1" /translation="MNADAQSTDSGLSMREPLSHASIQEMLRRVVEKQAADDTTAIGK VFSEAGRAYAQDALPSDKGEVLKISFSLDATQQNILRANFPGRRIVFSNSSSSSHCFA AAHRLLETDFVYRCFGNTVDSIIDLGGNFVSHMKVKRHNVHCCCPILDARDGARLTER ILSLKSYVRKHPEIVGEADYCMDTFQKCSRRADYAFAIHSTSDLDVGELACSLDQKGV MKFICTMMVDADMLIHSEGEIPNFNVRWEIDHKNDLIHFDFIDEPNLGYSHRFSLLKH YLTYNAVDLGHAAYRIERKQDFGGVMVIDLTYSLGFVPKMPHSNGRSCAWYNRVKGQM VVHTVNEGYYHHSYQTAVRRKVLVDKKVLTRVTEVAFRQFRPNSDAHSAIQSIATMLS SSTNHTIIGGVTLISGKPLSPDDYIPVATTIYYRVKKLYNAIPEMLSLLDKGERLSTD AVLKGSEGPTWYSGPTFLSALDKVNVPGDFVAKALLSLPKRDLKSLFSRSATSHSERT PVQDENPVRCTDGVFYPIRMLLKCLGSDKFESVTITDPRSNTETTVDLYQSFRKKIET VFSFILGKIDGPSPLISDPVYFQSLEDVYYAEWHQGNAIDASSYARTLLDNIRKQKEE SLKAKAKEVEDAQKLNRAILQVHAYLEAHPDGRKIEGLGLSSQFIAKIPELAIPTPKP LPEFEKNAETGEILRINPHSDAILEAIDYLKSTSANSIITLNKLGDHCQWTTKGLDVV WAGDDKRRAFIPKKNTWVGPTARSYPLAKYERAMSKDGYVTLRWDGEVLDANCVRSLS QYEIVFVDQPCVFASAERIIPSLEKALGLEAHFSVTIVDGVAGCGKTTNIKQIARSSG QDVDLILTSNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQ HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPAD ATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA QTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPCHGLVALSRHKK TFKYFTIAHDSDDVIYNACRDAGNTDDSILARSYNTNF" /product="P1 protein" ORIGIN 1 gtttttatct tacacacgct tgtgcaagat agttaatcca tttattttcc ttgcactttc 61 cacagcatta cgttcattca atactgtgaa gaattcacta tgaatgctga cgcccaatcc 121 accgattccg gccttagtat gcgagaacct ttatctcatg cctccattca ggagatgctt 181 cgacgtgtag tcgaaaaaca agctgcagac gacacaaccg cgatcggaaa ggttttctcc 241 gaagcgggtc gtgcctatgc ccaggatgct ctcccttcag acaaaggtga agtcttgaag 301 atatcctttt ccctggacgc cacgcaacaa aacatactac gcgccaactt tcctggtcga 361 cgtattgtat tttcaaacag ttcgagttca tctcactgtt ttgcggctgc ccatcgtcta 421 ctagaaactg attttgttta ccgatgtttc ggtaatacgg ttgatagtat catagacctt 481 ggaggaaatt tcgtttccca tatgaaggtg aagcggcata atgtacattg ctgctgtccc 541 atattggatg ctagagacgg agctaggctc acggagagaa tattgtctct aaagtcgtat 601 gtccgaaaac acccggaaat tgtgggtgaa gcagattact gtatggacac gtttcagaaa 661 tgctcaaggc gagctgacta tgcttttgcc atccattcta ctagcgatct cgacgtggga 721 gagttggcat gtagtttgga ccaaaaaggc gttatgaaat tcatttgcac catgatggtt 781 gatgcagata tgttaattca tagcgagggg gaaattccta actttaatgt tagatgggag 841 atcgatcata agaacgatct cattcatttc gacttcatcg acgagcccaa cttgggatat 901 agtcatcggt tttcattgct gaaacactat ttgacttaca atgccgttga tttgggtcat 961 gctgcttatc gaatcgaacg taagcaagat tttggaggtg tgatggttat tgacttaact 1021 tattcccttg gatttgtccc caagatgcca cactccaatg ggaggtcctg cgcctggtat 1081 aatagagtca aaggacaaat ggtagtgcac accgttaacg aggggtacta tcatcattca 1141 taccagacag cagtgaggcg gaaagtgctt gtcgacaaga aagtgcttac cagagttact 1201 gaagtcgcct ttaggcaatt cagacctaat tctgatgctc attccgcaat tcagtccata 1261 gcgactatgt tatcttcttc aacgaatcat accattatcg gtggtgtgac tctgatttcg 1321 ggcaaacctc tcagcccgga tgactatatt ccagtggcaa caacgattta ttatagagtg 1381 aaaaaactct ataacgccat tccagagatg ctatccctcc tagacaaagg agagaggcta 1441 tcaactgatg ctgttttaaa agggtctgaa ggtccaacgt ggtattctgg tcctaccttt 1501 ttaagcgcgc tggataaagt caatgttcct ggtgattttg tcgccaaagc tctgttgtcg 1561 ttacctaaga gagatctgaa atctctattt tctaggtcag cgacttctca ttctgaacgg 1621 acaccggttc aggatgagaa ccccgttcga tgcacagacg gtgtcttcta ccctataagg 1681 atgttgttga aatgcctagg aagtgacaaa tttgagtcgg tcactataac tgatcctaga 1741 agtaacacgg aaactaccgt ggatttatac caatctttcc gaaagaaaat tgaaacggtt 1801 ttctcattca ttcttggaaa gattgatggt ccttcacccc taatttctga tccagtatac 1861 ttccaatcac ttgaagatgt gtactatgct gaatggcacc aaggaaatgc catcgatgcg 1921 tcaagttacg cacgtaccct gttagacaat atcaggaagc agaaagaaga gagcttaaaa 1981 gctaaagcga aggaagttga agatgctcaa aaattaaata gagcaatttt gcaagttcat 2041 gcctatttgg aagctcatcc agatggaaga aaaatcgaag gactggggtt gagttctcag 2101 ttcatcgcaa aaatccccga gcttgcaatt ccaacgccaa aaccgttacc tgaattcgag 2161 aagaacgcag aaactggcga aattttgcgt atcaaccctc attcagatgc cattcttgaa 2221 gcaatcgatt acttgaagtc cacttcagcc aattctatca ttaccttgaa taaattgggt 2281 gatcattgtc agtggacgac aaaaggtctt gatgtagtat gggccggtga cgataaacgt 2341 cgagctttca tcccaaagaa aaatacttgg gtcggaccta ctgctagaag ttatcccctt 2401 gcaaaatatg aaagagcaat gagcaaggat ggatatgtaa ctctgagatg ggacggagaa 2461 gttctagatg ctaattgcgt caggagttta tctcaatatg agattgtctt tgttgaccaa 2521 ccttgcgtct ttgcctcagc ggaacgtatc attccaagcc tagagaaagc cctaggtctt 2581 gaagcgcact tttcagttac gattgttgat ggagttgctg gttgcggaaa aaccaccaat 2641 atcaagcaaa tagcccgttc atcgggtcag gatgtggatt tgatccttac cagcaatcgt 2701 agctctgccg atgagttaaa agaaaccatc gattgttcac cgttgacaaa gttgcattac 2761 attcgtacct gtgattctta cttgatgtct gcctcggcgg taaaagcaca gaggttaatt 2821 tttgatgaat gttttttgca acatgcaggt ttagtctatg ccgctgccac tttagctggt 2881 tgcagcgaag tcattggttt tggtgacacg gaacaaattc cttttgtctc aaggaatccg 2941 tcatttgttt ttcgtcatca taagctaact gggaaagtcg agaggaaact aattacctgg 3001 agatccccag cagatgccac ctattgcctt gaaaagtatt tttacaagaa caagagaccg 3061 gtgaagacaa attccagagt actaagatct atcgaagttg tgccgataaa ttcccctgtg 3121 agcgttgaga gaaataccaa cgctctttat ttgtgtcata ctcaagctga aaaggcagtt 3181 ttgaaagctc aaacacattt aaagggatgt gataatatct ttactactca tgaagctcag 3241 ggtaagactt tcgacaatgt ttatttctgt cgtttaactc gtacctcaac gagtcttact 3301 actggtagag atccaataaa tggtccatgc catggattag ttgccttgtc gagacacaag 3361 aagactttta aatattttac catcgcccat gatagcgatg atgtgatcta caatgcttgt 3421 agagatgccg gtaataccga cgatagtatt ttagcgagga gctataatac taatttctga 3481 attagtcatt ggtaattcaa tgccaacctc cactgggtgg attaaggttg aggtatagaa 3541 ccctattcgc tcctgatagg aaagattcta tattgcttat atacatgctt atgcatgtat 3601 ataaatgctc atgctaaatt gcatgaatgc ccctaaggga tgc //