LOCUS       HQ316636                2595 bp    ss-RNA  linear   VRL 27-OCT-2010
DEFINITION  Alfalfa mosaic virus strain HZ segment RNA2, complete sequence.
ACCESSION   HQ316636
VERSION     HQ316636.1
KEYWORDS    .
SOURCE      Alfalfa mosaic virus
  ORGANISM  Alfalfa mosaic virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Bromoviridae; Alfamovirus.
REFERENCE   1  (bases 1 to 2595)
  AUTHORS   Jin,L., Qin,Z. and Chen,J.
  TITLE     The complete sequence of Alfalfa mosaic virus isolate from China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2595)
  AUTHORS   Jin,L., Qin,Z. and Chen,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2010) Institute of Bioengineering, Zhejiang
            Sci-Tech University, Xiasha 2# Road, Hangzhou, Zhejiang 310018,
            China
COMMENT     GenBank Accession Numbers HQ316635-HQ316637 represent the complete
            genome of Alfalfa mosaic virus strain HZ.
FEATURES             Location/Qualifiers
     source          1..2595
                     /mol_type="genomic RNA"
                     /country="China"
                     /lab_host="Nicotiana glutinosa"
                     /segment="RNA2"
                     /collection_date="Oct-2009"
                     /db_xref="taxon:12321"
                     /strain="HZ"
                     /organism="Alfalfa mosaic virus"
     CDS             56..2428
                     /codon_start=1
                     /protein_id="ADO85716.1"
                     /translation="MFTLLRCLGFGISEPTNTSSSEYVPESSVEEISNEVAELDSVDP
                     SFQCYKHVFVSLMLVRKMTQAAEDFHENFGGEFDSPCCRVYRLYRHFVNEDDAPAWAI
                     PNVVNEDSYDDYAYLREELDAIDSSFELLNEERELSEFTDRLNALRFFPVSKTEALPV
                     ANVQEVKLISENIPVIDDLYYYSDENIPSEMPAPLLDELGMLPEELGPLNEIEDIKPV
                     AAPIVLLSEFKASDNAKPLDIVEIIPDVSLTKPYEAVISGNDWMTLGRMIPTTPVPTI
                     RDVFFSGLSRHGSPEVIQNALDEFLPLHHSIDDKYFQEWVETSDKFLDVDPCRIDLSV
                     FNNWQSSENCYEPRFKTGALSTRKGTQTEALLAIKKRNMNVPNLGQIYDVNSVANSVA
                     NKLLTTVIDPDKLCMFPDFISEGEVSYFQDYIVGKNPDPELYSDPLGVRSIDSYKHMI
                     KSVLKPVEDNSLHLERPMPATITYHDKDIVMSSSPIFLAAAARLMLVLGDKITIPSGK
                     FHQLFSIDAEAFDASFHFKEIDFSKFDKSQNELHHLIQERFLKYLGIPNEFLTLWFNA
                     HRKSRISDSKNGVFFNVDFQRRTGDALTYLGNTIVTLACLCHVHDLMDPNVKFVVASG
                     DDSLIGTVEELPRDQEFLFTTLFNLEAKFPHNQPFICSKFLITMPTISGGKVVLPVPN
                     PLKLLIRLGSKKVNADIFDEWYQSWIDIIGVFNDHHVIRCVAAMTAHRYLRRPSLYLE
                     AALESLGKIFASKTLCKECLFNEKHESNVKIKPRRVKKSHSDARSRARRA"
                     /product="P2 protein"
ORIGIN      
        1 gtttttatct tttcgcgatt gaaaagataa gttttttcag tttaatcttt tcaatatgtt
       61 cactcttttg agatgtctcg gttttggtat tagtgaacct actaatactt cctcatcaga
      121 gtacgttccc gagagttccg ttgaagagat ttccaacgaa gtcgctgaac ttgattcagt
      181 ggatccatca ttccaatgtt acaaacatgt ttttgtatca ttgatgctcg taagaaagat
      241 gactcaagct gccgaagact tccacgagaa ttttggggga gaattcgata gcccttgttg
      301 tagggtttac cgtctttata gacattttgt taatgaagac gatgcacccg cttgggccat
      361 accgaatgtc gtgaatgaag attcttacga cgattatgcc tacctccgag aggagttaga
      421 tgccatagac agctcttttg agttgctaaa cgaagagcgt gagttatcgg aatttacgga
      481 cagactcaac gctttaagat tttttcctgt ttccaaaaca gaagcgctac cagtggcgaa
      541 tgtccaagag gtcaaactca tttctgagaa cataccagtc attgatgacc tttattacta
      601 ctctgacgag aatattccgt ctgaaatgcc cgcaccatta ctggatgagt tggggatgtt
      661 accggaggaa cttggacctc tgaatgaaat cgaagacatt aagccggtgg cggctccaat
      721 cgtattacta tctgagttta aagcctcaga taatgctaag ccactcgaca tagtcgaaat
      781 cattccagac gtgagtctga cgaaacctta tgaagccgtc atatcaggta atgattggat
      841 gacgttgggg aggatgatac ctaccactcc cgttcctacc ataagggatg tcttcttctc
      901 tggcctttct cggcatggat cgccggaagt gatccagaat gctcttgatg aatttcttcc
      961 gctccatcat tcaattgatg ataagtattt tcaagaatgg gttgaaacct cagataaatt
     1021 tctcgatgtc gatccatgtc gaatcgatct gagtgttttc aacaactggc agtcttcgga
     1081 aaactgctat gaacctcggt ttaaaaccgg tgcattatcc acacgtaagg gcactcaaac
     1141 tgaagcccta ttagcgataa agaaacgtaa tatgaatgtg cctaacctgg ggcaaattta
     1201 tgacgtgaat tctgttgcta attccgtggc taataagctc ttaacaactg ttatagatcc
     1261 tgataagcta tgcatgtttc cagattttat atctgagggt gaagtttcgt atttccagga
     1321 ctatatagtt ggaaagaatc ccgaccctga attatattca gatcctctag gcgttcgttc
     1381 catcgacagc tataaacaca tgattaaatc cgtgttaaag cccgttgaag ataattctct
     1441 gcacctagaa cggccgatgc cagcaaccat aacgtaccat gataaagata tcgtgatgtc
     1501 atcttcacca atttttttgg ctgctgctgc ccgcttgatg ttagtcttag gagataagat
     1561 aactatacca agcggaaaat tccatcaatt gttttccatc gatgctgaag cctttgatgc
     1621 aagtttccat tttaaagaga tagacttttc gaagttcgac aaaagtcaaa atgagttgca
     1681 tcacttgatc caagaaaggt ttctgaaata cttaggtata cccaacgaat ttctaacctt
     1741 atggtttaat gcgcatagaa aatcccgaat ctcagattcg aagaatggcg ttttctttaa
     1801 cgtcgatttc caacgtcgta ctggagatgc gctcacatac ttgggaaaca caatagtgac
     1861 attagcttgt ctatgtcatg tgcatgactt gatggaccca aatgtgaaat tcgttgtcgc
     1921 ttccggtgat gattcattga taggtactgt ggaggaatta ccaagagatc aagagtttct
     1981 tttcacgact ctttttaatc ttgaagcaaa gtttcctcat aaccagcctt tcatatgcag
     2041 taagtttttg attactatgc ccactataag tggaggcaaa gttgttctgc cagtaccgaa
     2101 tccattgaaa ctcctcatac gcttgggttc gaagaaagtc aatgccgata tattcgatga
     2161 atggtatcaa tcttggattg atataattgg cgtttttaac gaccaccatg tcatccgatg
     2221 cgttgccgcg atgacagcac ataggtatct cagaagaccg agtttatacc tagaagccgc
     2281 tttagaatcc ctaggtaaga tcttcgctag taagaccttg tgtaaggaat gcctctttaa
     2341 tgagaagcac gagtctaatg taaaaattaa gcctcgtaga gtgaaaaaat cccactcgga
     2401 tgccaggtca agggcacgcc gagcttgatg ttttcttgac ataagtcaaa ttgccaacct
     2461 ccactgggtg ggttaaggtt gaggtataga atcctattcg ctcctgatag gagaaattct
     2521 atattgctta tatatgtgct tatgcacata tataaatgct cacgcaaaac tgcatgaatg
     2581 cccctaaggg atgca
//