LOCUS KC881008 3643 bp RNA linear VRL 30-MAY-2014 DEFINITION Alfalfa mosaic virus strain Manfredi P1 gene, complete cds. ACCESSION KC881008 VERSION KC881008.1 KEYWORDS . SOURCE Alfalfa mosaic virus ORGANISM Alfalfa mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae; Alfamovirus. REFERENCE 1 (bases 1 to 3643) AUTHORS Trucco,V., de Breuil,S., Bejerman,N., Lenardon,S. and Giolitti,F. TITLE Complete nucleotide sequence of Alfalfa mosaic virus isolated from alfalfa (Medicago sativa L.) in Argentina JOURNAL Virus Genes 48 (3), 562-565 (2014) PUBMED 24510307 REFERENCE 2 (bases 1 to 3643) AUTHORS Trucco,V., de Breuil,S., Bejerman,N., Lenardon,S. and Giolitti,F. TITLE Direct Submission JOURNAL Submitted (08-APR-2013) IPAVE, INTA, Camino 60 cuadras Km 5, 5, Cordoba, Cordoba 5119, Argentina COMMENT GenBank Accession Numbers KC881008-KC881010 represent sequences from the 3 segments of Alfalfa mosaic virus strain Manfredi. ##Assembly-Data-START## Assembly Method :: ngs Backbone v. 1.4.0 Sequencing Technology :: 454 ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3643 /mol_type="genomic RNA" /country="Argentina" /collection_date="Dec-2011" /host="Medicago sativa" /db_xref="taxon:12321" /strain="Manfredi" /organism="Alfalfa mosaic virus" 5'UTR 1..99 CDS 100..3480 /codon_start=1 /protein_id="AGV15824.1" /translation="MNADAQSTDSSLSMREPLSHASIQEMLRRVVEKQAADDTTAIGK VFSEAGRAYAQDALPSDKGEVLKISFSLDATQQNILRANFPGRRIVFSNSSSSSHCFA AAHRLLETDFVYRCFGNTVDSIIDLGGNFVSHMKVKRHNVHCCCPILDARDGARLTER ILSLKSYVRKHPEIVGEADYCMDTFQKCSRRADYAFAIHSTSDLDVGELACSLDQKGV MKFICTMMVMADMLIHNEGEIPNFNVRWEIDHKNDLIHFDFIDEPNLGYSHRFSLLKH YLTYNAVDLGHAAYRIERKQDFGGVMVIDLTYSLGFVPKMPHSNGRSCAWYNRVKGQM VVHTVNEGYYHHSYQTAVRRKVLVDKKVLTRVTEVAFRQFRPNSDAHSAIQSIATMLS SSTNHTIIGGVTLISGKPLSPDDYIPVATTIYYRVKKLYNAIPEMLSLLDKGERLSTD AVLKGSEGPTWYSGPTFLSALDKVNVPGDFVAKALLSLPKRDLKSLFSRSATSHSERT PVQDESPVRCTDGVFYPIRMLLKCLGSDKFESVTITDPRSNTETTVDLYQSFQKKIET VFSFILGKIDGPSPLISDPVYFQSLEDVYYAEWHQGNAIDASSYARTLLDNIRKQKEE SLKAKAKEVEDAQKLNRAILQVHAYLEAHPDGRKIEGLGLSSQFIAKIPELAIPTPKP LPEFEKNAETGEILRINPHSDAILEAIDYLKSTSANSIITLNKLGDHCQWTTKGLDVV WAGDDKRRAFIPKKNTWVGPTARSYPLAKYERAMSKDGYVTLRWDGEVLDANCVRSLS QYEIVFVDQSCVFASAERIIPSLEKALGLEAHFSVTIVDGVAGCGKTTNIKQIARSSG QDVDLILTSNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQ HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPAD ATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA QTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPCHGLVALSRHKK TFKYFTIAHDSDDVIYNACRDAGNTDDSILARSYNTNF" /product="P1" misc_feature 301..1311 /db_xref="CDD:279929" /note="Viral methyltransferase; Region: Vmethyltransf; pfam01660" misc_feature 2599..3381 /db_xref="CDD:279750" /note="Viral (Superfamily 1) RNA helicase; Region: Viral_helicase1; pfam01443" 3'UTR 3481..3643 ORIGIN 1 gtttttatct tacacacgct tgtgcaagat agttaatcca tttattttcc ttgcgctttc 61 cacagcatta cgttcattca atactgtgaa gaattcacta tgaatgctga cgcccaatcc 121 accgattcca gccttagtat gcgagaacct ttatctcatg cctccattca ggagatgctt 181 cgacgtgtag tcgaaaagca agctgcagac gacacaactg cgatcggaaa ggttttctcc 241 gaagcgggtc gtgcctatgc ccaggatgct ctcccttcag acaaaggtga agtcttgaag 301 atatcctttt ccctggatgc cacgcaacaa aacatactac gcgccaactt tcctggtcga 361 cgtattgtat tttcaaacag ttcgagttca tctcactgtt ttgcggctgc ccatcgtcta 421 ctagaaactg attttgttta ccgatgtttc ggtaatacgg ttgatagtat tatagacctt 481 ggaggaaatt tcgtttccca tatgaaggtg aagcggcata atgtacattg ctgctgtccc 541 atattggatg ctagagacgg agctaggctc acggagagaa tattgtctct aaagtcgtat 601 gtccgaaaac acccggaaat tgtgggtgaa gcagattact gtatggacac gtttcagaaa 661 tgctcaaggc gagctgacta tgcttttgcc atccattcta ctagcgatct cgacgtggga 721 gagttggcat gtagtttgga ccaaaaaggc gttatgaaat tcatttgcac catgatggtt 781 atggcagata tgttaattca taacgagggg gaaattccta actttaatgt tagatgggag 841 atcgatcata agaacgatct cattcatttc gacttcatcg acgagccaaa tttgggatat 901 agtcatcggt tttcattgct gaaacactat ttgacttaca atgccgttga tttgggtcat 961 gctgcttatc gaatcgaacg taagcaagat tttggaggtg tgatggttat tgacttaact 1021 tattcccttg gatttgtccc caagatgcca cactccaatg ggaggtcctg cgcctggtat 1081 aatagagtca aaggacaaat ggtagtgcac accgttaacg aggggtacta tcatcattca 1141 taccagacag cagtgaggcg gaaagtactt gtcgacaaga aagtgcttac cagagttact 1201 gaagttgcct ttaggcaatt cagacctaat tctgatgctc attccgcaat tcagtccata 1261 gcgactatgt tatcttcttc aacgaatcat accattatcg gtggtgtgac tctgatttcg 1321 ggcaaacctc tcagcccgga tgactatatt ccagtggcaa caacgattta ttatagagtg 1381 aaaaaactct ataacgccat tccagagatg ctatccctcc tagacaaagg agagaggtta 1441 tcaactgatg ctgttttaaa agggtctgaa ggtccaacgt ggtattctgg tcctaccttt 1501 ttaagcgcac tggataaagt caatgttcct ggtgattttg tcgccaaagc tctgttgtcg 1561 ttgcctaaga gagatctgaa atctctattt tctaggtcag cgacttctca ttctgaacgg 1621 acaccggttc aggatgagag ccccgttcga tgcacagacg gtgtcttcta ccctataagg 1681 atgttgttga aatgcctagg aagtgacaaa tttgagtcgg tcactataac tgatcctaga 1741 agtaacacgg aaactaccgt ggatttatac caatctttcc aaaagaaaat tgaaacggtt 1801 ttctcattta ttcttggaaa gattgatggt ccttcacctc taatttctga tccagtatac 1861 ttccaatcac ttgaagatgt gtactatgct gaatggcacc aaggaaatgc catcgatgcg 1921 tcaagttacg cacgtaccct gttagacaat atcaggaagc agaaagaaga gagcttaaaa 1981 gctaaagcga aggaagttga agatgctcaa aaattaaata gagcaatttt gcaagttcat 2041 gcctatttgg aagctcatcc agatggaaga aaaatcgaag gactggggtt gagttctcag 2101 ttcatcgcga aaatccccga gcttgcaatt ccaacaccta aaccgttacc tgaattcgag 2161 aagaacgcag aaactggcga aattttgcgt atcaaccctc attcagatgc cattcttgaa 2221 gcaattgatt acttgaagtc cacttcagcc aattctatca ttaccttgaa taaattgggt 2281 gatcattgtc agtggacgac aaaaggtctt gatgtagtat gggccggtga cgataaacgt 2341 cgagctttca tcccaaagaa aaatacttgg gtcggaccta ctgctagaag ttatcccctt 2401 gcaaaatatg aaagagcaat gagcaaggat ggatacgtaa ctctgagatg ggacggagaa 2461 gttctagatg ctaattgcgt caggagtttg tctcaatacg agattgtctt tgttgaccaa 2521 tcttgcgtct ttgcctcagc ggaacgtatc attccaagcc tagagaaagc cctaggtctt 2581 gaagcacact tttcagttac gattgttgat ggagttgctg gttgcggaaa aaccaccaat 2641 atcaagcaaa tagcccgttc atcgggtcag gatgtggatt tgatccttac cagcaatcgt 2701 agctctgccg atgagttaaa agaaaccatc gattgttcac cgttgacaaa gttgcattac 2761 attcgtacct gtgattctta cttaatgtct gcctcggcgg taaaagcaca gaggttaatt 2821 tttgatgaat gttttttgca acatgcaggt ttagtctatg ccgctgccac tttagctggt 2881 tgtagcgaag tcattggttt tggtgacacg gaacaaattc cttttgtctc aaggaatccg 2941 tcatttgttt ttcgtcatca taagctaact gggaaagtcg agaggaaatt aattacctgg 3001 agatccccag cagatgccac ctattgcctt gaaaagtatt tttacaagaa caagagaccg 3061 gtgaagacaa attccagagt actaagatct atcgaagttg tgccgataaa ttcccctgtg 3121 agcgttgaga gaaataccaa cgctctttat ttgtgtcata ctcaagctga aaaggcagtt 3181 ttgaaagctc aaacacattt aaagggatgt gataatatct ttactactca tgaagctcag 3241 ggtaagactt tcgacaatgt ttatttctgt cgtttaactc gtacctcaac gagtcttact 3301 actggtagag atccaataaa tggcccatgc catggattag ttgccttgtc gagacacaag 3361 aagactttta aatattttac catcgcccat gatagcgatg atgtgatcta caatgcttgt 3421 agagatgccg gtaataccga cgatagtatt ttagcgagga gctataatac taatttctga 3481 attagtcatt ggtaattcaa tgccaacctc cactgggtgg attaaggttg aggtatagaa 3541 ccctattcgc tcctgatagg aaagattcta tattgcttat atacatgctt atgcatgtat 3601 ataaatgctc atgctaaatt gcatgaatgc ccctaaggga tgc //