LOCUS NC_002024 2593 bp ss-RNA linear VRL 08-DEC-2008 DEFINITION Alfalfa mosaic virus RNA 2, complete sequence. ACCESSION NC_002024 VERSION NC_002024.2 DBSOURCE BioProject accession PRJNA14667 KEYWORDS RefSeq; unidentified reading frame. SOURCE Alfalfa mosaic virus ORGANISM Alfalfa mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae; Alfamovirus. REFERENCE 1 (bases 1 to 2593) AUTHORS Cornelissen,B.J., Brederode,F.T., Veeneman,G.H., van Boom,J.H. and Bol,J.F. TITLE Complete nucleotide sequence of alfalfa mosaic virus RNA 2 JOURNAL Nucleic Acids Res. 11 (10), 3019-3025 (1983) PUBMED 6304618 REFERENCE 2 (bases 1 to 2593) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-AUG-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from X01572. On Jul 16, 2004 this sequence version replaced gi:9626926. Data kindly reviewed (30-JAN-1986) by J.F. Bol. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2593 /mol_type="genomic RNA" /db_xref="taxon:12321" /segment="RNA 2" /organism="Alfalfa mosaic virus" gene 55..2427 /locus_tag="AMVs2gp1" /db_xref="GeneID:962668" CDS 55..2427 /locus_tag="AMVs2gp1" /db_xref="GOA:P03593" /db_xref="InterPro:IPR001788" /db_xref="InterPro:IPR007094" /db_xref="UniProtKB/Swiss-Prot:P03593" /db_xref="GeneID:962668" /codon_start=1 /protein_id="YP_053235.1" /translation="MFTLLRCLGFGVNEPTNTSSSEYVPEYSVEEISNEVAELDSVDP LFQCYKHVFVSLMLVRKMTQAAEDFLESFGGEFDSPCCRVYRLYRHFVNEDDAPAWAI PNVVNEDSYDDYAYLREELDAIDSSFELLNEERELSEITDRLNALRFFPVSKTEALPV ANVQEVKLISETYQLLMTFINYSDENIPSEMPAPLLDELGMLPEELGPLNEIEDIKPV AAPITLLSEFRASDNAKPLDIVEIIPDVSPTKPYEAVISGNDWMTLGRIIPTTPVPTI RDVFFSGLSRHGSPEVIQNALDEFLPLHHSIDDKYFQEWVETSDKSLDVDPCRIDLSV FNNWQSSENCYEPRFKTGALSTRKGTQTEALLAIKKRNMNVPNLGQIYDVNSVANSVV NKLLTTVIDPDKLCMFPDFISEGEVSYFQDYIVGKNPDPELYSDPLGVRSIDSYKHMI KSVLKPVEDNSLHLERPMPATITYHDKDIVMSSSPIFLAAAARLMLILRDKITIPSGK FHQLFSIDAEAFDASFHFKEIDFSKFDKSQNELHHLIQERFLKYLGIPNEFLTLWFNA HRKSRISDSKNGVFFNVDFQRRTGDALTYLGNTIVTLACLCHVYDLMDPNVKFVVASG DDSLIGTVEELPRDQEFLFTTLFNLEAKFPHNQPFICSKFLITMPTTSGGKVVLPIPN PLKLLIRLGSKKVNADIFDEWYQSWIDIIGGFNDHHVIRCVAAMTAHRYLRRPSLYLE AALESLGKIFAGKTLCKECLFNEKHESNVKIKPRRVKKSHSDARSRARRA" /product="89.7 kd protein" variation 1431 /locus_tag="AMVs2gp1" /note="c in pAL2-1; t in pAL2-[21,41]" ORIGIN 1 gtttttatct tttcgcgatt gaaaagataa gtttttcagt ttaatctttt caatatgttc 61 actcttttga gatgtctcgg attcggtgtt aatgaaccta ctaacacttc ctcatcagag 121 tatgttcccg agtattccgt tgaagagatt tccaacgaag tcgctgaact cgattcagtg 181 gatccattat tccaatgtta caaacatgtt tttgtatcat tgatgctcgt aagaaagatg 241 actcaagctg ccgaagactt cctcgagagt tttgggggag aattcgatag cccttgttgt 301 agggtttacc gtctttatag acattttgtt aatgaagacg atgcacccgc ttgggccata 361 ccgaatgtcg tgaatgaaga ttcttacgac gattatgcct acctccgaga ggagttagat 421 gccatagaca gctcttttga gttgctaaac gaagagcgtg agttatcgga aattacggac 481 agactcaacg ctttaagatt tttccctgtt tctaaaacag aagcgctacc agtggcgaat 541 gtccaagagg tcaaactcat ttctgagaca taccagttat tgatgacctt tattaactac 601 tctgacgaga atattccgtc tgaaatgccc gcaccattac tggatgagtt ggggatgtta 661 ccggaggaac ttggacctct gaatgaaatt gaagacatta agccggtggc ggctccaatc 721 acattactat ctgagtttag agcctcagat aatgctaagc cactcgacat agtcgaaatc 781 attccagacg taagtccgac gaaaccttat gaagccgtca tatcaggtaa tgattggatg 841 acgttgggga ggatcatacc taccactccc gttcctacca taagggatgt cttcttctct 901 ggtctttctc ggcacggatc gccggaagtg atccagaatg ctcttgatga atttcttccg 961 ctccatcatt caattgatga taagtatttt caagaatggg ttgaaacctc agataaatct 1021 ctcgatgtcg atccatgtcg aatcgatctg agtgttttca acaactggca gtcttcggaa 1081 aactgctatg aacctcggtt taaaaccggt gcattatcca cacgtaaggg cactcaaact 1141 gaagccctat tagcgataaa gaaacgtaat atgaatgtgc ctaacctggg gcagatttat 1201 gacgtgaatt ctgttgctaa ttccgtggtt aataagctct taacaactgt tatagatcct 1261 gataagctgt gcatgtttcc agatttcata tctgagggtg aagtttcgta tttccaggac 1321 tatatagttg ggaagaatcc cgaccctgaa ttatattcag atcctctagg tgttcgttcc 1381 atcgatagct ataaacacat gattaaatcc gtgttaaagc ccgttgaaga taattctctg 1441 cacctagaac ggccgatgcc agcaaccata acataccatg ataaagatat cgtgatgtca 1501 tcttcaccaa tttttttggc tgctgctgcc cgcttgatgt taatcttaag agataagata 1561 accataccaa gcggaaaatt ccatcaattg ttttccatcg atgctgaagc ctttgatgca 1621 agtttccatt ttaaagagat agacttttcg aagtttgaca aaagtcaaaa tgagttgcat 1681 cacttgatcc aggaaaggtt tctgaaatac ttaggtatac ccaacgaatt tctaacctta 1741 tggtttaatg cgcatagaaa atcccgaatc tcagattcga agaatggcgt tttttttaac 1801 gtcgatttcc aacgtcgtac tggagatgcg ctcacgtact tgggaaacac aatagtgaca 1861 ttagcttgtc tgtgtcacgt gtatgacttg atggacccaa atgtgaaatt cgttgttgct 1921 tccggtgatg attcattgat aggcactgtg gaggaattac caagagatca agagtttctt 1981 ttcacgactc tttttaatct tgaagcaaag tttcctcata accagccttt catatgcagt 2041 aagtttttga ttactatgcc cactacaagt ggaggcaaag ttgtcctgcc gataccgaat 2101 ccattgaaac tcctcatacg cttgggttcg aagaaagtca atgccgatat attcgatgaa 2161 tggtatcaat cttggattga tataattggt ggttttaacg accaccatgt catccgatgc 2221 gttgccgcga tgacagcaca taggtatctc agaagaccga gtttatacct agaagctgct 2281 ttggaatccc taggtaagat cttcgctggt aagaccttgt gtaaggaatg cctctttaat 2341 gagaagcacg agtctaatgt aaaaattaag cctcgtagag tgaaaaaatc ccactcggat 2401 gccaggtcaa gggcacgccg agcttgatgt tttcttgaca taagtcaaat tgccaacctc 2461 cactgggtgg gtcaaggttg aggtatagaa tcctattcgc tcctgatagg agaaattcta 2521 tattgcttat atatgtgctt acgcacatat ataaatgctc atgcaaaact gcatgaatgc 2581 ccctaaggga tgc //