LOCUS       KX463476                2604 bp    RNA     linear   VRL 15-MAY-2017
DEFINITION  Alfalfa mosaic virus isolate FER1 RNA-dependent RNA polymerase
            gene, complete cds.
ACCESSION   KX463476
VERSION     KX463476.1
KEYWORDS    .
SOURCE      Alfalfa mosaic virus
  ORGANISM  Alfalfa mosaic virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Bromoviridae; Alfamovirus.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Fattouh,F.A., Awad,E.E. and Fathy,R.M.
  TITLE     Molecular detection of plant viruses
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Fattouh,F.A., Awad,E.E. and Fathy,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2016) Botany and Microbiology, Faculty of
            Science, Muhram Bek, Alexandria 21522, Egypt
COMMENT     ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy
            sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /mol_type="genomic RNA"
                     /country="Egypt"
                     /collection_date="15-Nov-2014"
                     /host="Solanum tuberosum"
                     /db_xref="taxon:12321"
                     /isolate="FER1"
                     /organism="Alfalfa mosaic virus"
     CDS             66..2438
                     /codon_start=1
                     /protein_id="ARQ16412.1"
                     /translation="MFSLLRCLGFGVSEPTGTSSSENVPKNPVEETPNEVTELDSVDP
                     LSRSYERILVSLMLVRKMTQAAEDFHKSFGGELDSPCCRVYRLYRHFVNEDDAPAWAI
                     PNVVNEDSYDEYAYLQEELDAIDSSFELLNEERELSEITDRLNALRYFPVSETEVLPV
                     ANVQEVKLISENIPVIDDLYYYSDENVPSELPSPLLDELGKLPEDLGPLNEIEDIRLV
                     AAPITLLSEFKASDNAKPLDIVEIVPDVSLTKPYEAVISGNDWMTLGRMIPTTPIPYH
                     KGKILLKLIFLAWIAGVIQNALDEFLPLHHSIDDKYFQEWVETSDKSLDVDPCRIDLS
                     VFNNWQSSESCYEPRFKTGALSTRKGTQTEALLAIKKRNMNVPNLGQIYDVNSVANSV
                     VNKFLTTVIDPDKLCMFPDFISEGEVSYFQDYIVGKNPDPELYSDPLGVRAIDSYKHM
                     IKSVLKPVEDNSLHLERPMPATITYHDKDIVMSSSPIFLAAAARLMLVLRDKITIPSG
                     KFHQLFSIDAEAFDASFHFKEIDFSKFDKRSLVAFLDPSNASEYLGIPNEFLTLWFNA
                     HRKSRISDSKNGVFFNVDFQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASG
                     DDSLIGTVEELPRDQEFLFTTLFNLEAKFPHNQPFICSKSLITMPTLSGSKVVLPVPN
                     PLKLLIRLGSKKVNADIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLE
                     AALESLGKIFASKTLCKECLFNEKHESNVKIKPRRVRKSHSDARSRARRA"
                     /product="RNA-dependent RNA polymerase"
ORIGIN      
        1 gtttttatct tttcgcgatt gaaaagataa gtttttcagt ttaatctttt ttaatctttt
       61 ttaatatgtt ctctcttttg agatgtcttg gattcggtgt tagtgaaccc actggcactt
      121 cctcatcaga gaatgttccc aagaatcccg ttgaagagac tcccaacgaa gttactgaac
      181 ttgattcagt agatccatta tcccgaagtt acgaacgtat tctcgtatca ttgatgctcg
      241 taagaaagat gactcaagct gccgaggact tccacaagtc atttggggga gaactcgata
      301 gtccttgttg tagggtttac cgtctttata gacattttgt taatgaagac gatgcacctg
      361 cttgggccat accgaacgtc gtgaatgaag actcttacga cgaatatgcc tacctccaag
      421 aggagctaga tgccattgat agctcttttg agttgctaaa tgaagagcgt gagttatcgg
      481 aaattacgga cagactcaac gctttaagat atttccctgt ttctgaaaca gaagtgctac
      541 cagtggcgaa tgtccaagag gtcaagttga tttctgagaa tataccagtt atcgatgacc
      601 tttattatta ctctgacgag aatgttccgt ctgaattgcc ctcaccatta ctggatgagt
      661 tggggaagtt gccggaggat cttggacctc tgaatgaaat tgaagacatt aggctggtgg
      721 cggctccaat cacgttacta tctgagttta aagcctcgga taatgctaag ccactcgaca
      781 tagtcgaaat cgttccagac gtaagtctga cgaaacctta tgaagccgtc atatcaggta
      841 atgattggat gacgttgggg aggatgatac ctaccactcc cattccctac cataaaggaa
      901 aaattctcct caagttaatc tttctcgcat ggatcgccgg agtgatccag aatgctcttg
      961 atgaatttct tccgctccat cattcaattg atgataagta ttttcaagaa tgggttgaaa
     1021 cttcagataa atctctcgat gtcgatccat gtcgaatcga tctgagtgtt ttcaacaact
     1081 ggcagtcttc ggaaagctgc tatgaacctc ggtttaagac cggtgcgttg tccacacgta
     1141 agggcactca aactgaagcc ctattagcaa taaagaaacg taatatgaat gtgcctaacc
     1201 tggggcagat ttatgacgtg aattctgttg ctaattccgt ggtcaataag ttcttaacaa
     1261 ctgttataga tcctgataag ttgtgcatgt ttccagattt tatatctgag ggtgaagttt
     1321 cgtatttcca ggactatata gttgggaaga atcccgaccc tgaactatat tcagatcctc
     1381 taggtgtccg tgccatcgat agctacaaac acatgattaa atctgtgttg aagcccgttg
     1441 aagataattc tctgcaccta gaacggccga tgccagcaac cataacatac catgataaag
     1501 atatcgtgat gtcatcttca ccaatctttt tggctgctgc tgcccgcttg atgctagtct
     1561 taagagataa gataaccatt ccaagcggaa aattccatca attgttttcc atcgatgctg
     1621 aagcctttga tgcaagtttc cattttaaag agatagactt ttcgaagttt gacaaaagaa
     1681 gcttagttgc ttttcttgat ccaagtaatg cttctgaata cttaggtata cccaacgaat
     1741 ttctaaccct atggtttaat gcgcatagaa aatcccgaat ttcagattcg aagaatggcg
     1801 ttttctttaa cgtcgatttc caacgtcgta ctggagatgc gctcacatac ttggggaaca
     1861 caatagtgac attagcttgt ctatgtcatg tgtataactt gatggaccca aatgtgaaat
     1921 tcgttgttgc ttccggtgat gattcattga taggtactgt ggaggaatta ccaagagatc
     1981 aagagtttct tttcacgact ctttttaatc ttgaagcaaa atttcctcat aaccagcctt
     2041 tcatatgcag taagtctttg attactatgc ccactttaag tggaagcaaa gttgtactgc
     2101 cggtaccgaa tccattaaaa ctccttatac gcttgggttc gaagaaggtc aatgccgata
     2161 tattcgatga atggtatcaa tcttggattg atacaattgg tgtttttaat gatcaccacg
     2221 tcatccgatg cgttgccgcg atgacagcac acaggtatct cagaagaccg agtttgtacc
     2281 tagaagctgc tttagaatcc ctaggtaaga tcttcgctag taagaccttg tgtaaggaat
     2341 gcctctttaa tgagaagcac gagtctaatg taaaaattaa gcctcgtaga gtgagaaagt
     2401 cccactcgga tgccaggtca agggcacgcc gagcttgatg ttttcttgac ataagtcaaa
     2461 ttgccaacct ccactgggtg gattaaggtt gaggtataga atcctattcg ctcctgatag
     2521 gagaaattct atattgctta tatatgtgct tgtgcacata tataaatgct catgcaaaac
     2581 tgctgatggc cccctaagag atgc
//