LOCUS       FN667967                2038 bp    RNA     linear   VRL 26-AUG-2010
DEFINITION  Alfalfa mosaic virus RNA3 segment complete sequence, genomic RNA.
ACCESSION   FN667967
VERSION     FN667967.1
KEYWORDS    complete genome.
SOURCE      Alfalfa mosaic virus
  ORGANISM  Alfalfa mosaic virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Bromoviridae; Alfamovirus.
REFERENCE   1
  AUTHORS   Parrella,G., Acanfora,N. and Bellardi,M.G.
  TITLE     First Record and Complete Nucleotide Sequence of Alfalfa mosaic
            virus from Lavandula stoechas in Italy
  JOURNAL   Plant Dis. 94 (7), 924-924 (2010)
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Parrella,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2010) Parrella G., CNR- National Research
            Council, Istituto per la Protezione delle Piante, Via Universita
            133 - Portici (NA), 80055, ITALY
FEATURES             Location/Qualifiers
     source          1..2038
                     /mol_type="genomic RNA"
                     /country="Italy:Liguria (Savona province)"
                     /segment="RNA3"
                     /host="Lavandula stoechas"
                     /db_xref="taxon:12321"
                     /isolate="Lst"
                     /organism="Alfalfa mosaic virus"
     5'UTR           1..240
     gene            241..1143
                     /gene="3a"
     CDS             241..1143
                     /function="movement protein"
                     /protein_id="CBJ56557.1"
                     /gene="3a"
                     /db_xref="InterPro:IPR002538"
                     /db_xref="UniProtKB/TrEMBL:E0WEX7"
                     /codon_start=1
                     /product="30 kDa protein"
                     /translation="MENTKTNASSSGMSSSSSFSVSYAEEILLADEVSRINSMSILGP
                     NQLKLCTQLVLSNGAAPVVLSLVSKEKKSILNRMLPKIGQRMYVHHSAIYLLYMPNIL
                     KSSSGSITLKLFNEATEELVDVDTDHDATQACIFAGRYPRSILAKDAAKGHDLKLVVH
                     AVASTKANSAVGVLYPIWEDELSRKQILERGADFLKFPIAETEPVRDLLNAGKLTDFV
                     LDRTRLGVGSKNDPNPVLLEPRAKITGKAKTVFIPEGPSVPNTTISGIAPTVRIDAGS
                     PKGLGVPKGFTYESFIKDEILPDH"
     misc_feature    1144..1192
                     /note="intergenic region"
     gene            1193..1849
                     /gene="CP"
     CDS             1193..1849
                     /db_xref="GOA:E0WEX8"
                     /db_xref="InterPro:IPR002681"
                     /db_xref="UniProtKB/TrEMBL:E0WEX8"
                     /codon_start=1
                     /protein_id="CBJ56558.1"
                     /gene="CP"
                     /translation="MSSSQKKAGGKAGKPTKRSQNYAALRKAQLPKPPALKVPVAKPT
                     NTILPQTGCVWQSLGTPLSLSSFNGLGVRFLYSFLKDFAGPRILEEDLIYRMVFSITP
                     SHAGTFCLTDDVTTEDGRAVAHGNPMQEFPHGAFHANEKFGFELVFTAPTHAGMQNQN
                     FKHSYAVALCLDFDAQPEGSKNPSYRFNEVWVERKAFPRAGPLRSLITVGLLDEADDL
                     "
                     /product="coat protein"
                     /note="24 kDa protein"
     3'UTR           1850..2038
ORIGIN      
        1 gtattaatac cattttcaaa atattccaat tcaactcaat taacgctttt acagtgtaat
       61 tcgtactttt cgtaagtaag tttctgtaaa agcgtttctt gttttaattt ggtctaacac
      121 gtaattcgta ctcttcgtga gtaagttgtg ttagccatac ctatccttta aatttctggc
      181 aatttaaaaa gaaaatcatt cccattcgcg taattcgtac tcttcgtgag taagttgcaa
      241 atggagaata caaaaacaaa tgcctcgagt tctggaatgt cttcttcctc tagcttttca
      301 gtgtcttatg ctgaggaaat attactagct gatgaagttt caagaataaa ctcaatgtct
      361 attctgggtc ctaatcagct aaagctctgc actcaattgg tgctgtctaa tggagcagcg
      421 ccagtagttt taagccttgt gtcaaaggaa aagaaatcga ttttaaatcg tatgcttcct
      481 aagattggac agaggatgta cgtccatcac tcggctattt accttcttta tatgccaaat
      541 atactaaaaa gttcttcagg gagcatcacc ttgaagcttt ttaatgaggc tacagaagag
      601 ttagtggatg ttgacaccga ccatgatgct acccaagcat gtatatttgc tggacgttac
      661 ccccggagta ttctggcgaa agatgcagcg aaaggacacg acttaaaatt agtcgtccac
      721 gctgttgctt cgaccaaagc gaactctgca gtcggtgttc tataccccat ttgggaagat
      781 gagttaagca gaaagcagat cctcgaaagg ggtgccgatt tcctaaagtt tccaattgct
      841 gagaccgaac cagtccgcga tctcttaaat gctgggaaat tgacggactt tgttcttgat
      901 aggacaaggt taggtgtggg atcaaagaat gatcccaatc cggttctttt agaaccaaga
      961 gctaagatta ccgggaaggc aaagacagtt tttattcccg aaggtcctag tgttcctaat
     1021 accactataa gtggtatagc accgacggtg cgtatagatg ccggttctcc aaagggtctt
     1081 ggagttccga aagggtttac atatgaaagt tttattaaag atgaaatatt acccgatcat
     1141 tgatcggtaa tgggccgttt ttatttttaa ttttctttca attacttcca tcatgagttc
     1201 ttcacaaaag aaagctggtg ggaaagctgg taaacctact aaacgttctc agaactatgc
     1261 tgctctacgc aaagctcaac tgccgaagcc tccggcgttg aaagtcccgg ttgcaaaacc
     1321 gacgaatact atactgccac agacgggctg tgtgtggcaa agcctcggga cccctctgag
     1381 tctgagctct tttaatgggc tcggcgtgag attcctctac agttttctga aggatttcgc
     1441 gggacctcgg atcctcgaag aggatctgat ttacaggatg gtgttttcta taacaccgtc
     1501 ccatgccggc actttttgtc tcactgatga cgtgacgact gaggatggta gggccgttgc
     1561 gcatggtaat cccatgcaag aatttcctca tggcgcgttt cacgccaatg agaagttcgg
     1621 gtttgagctg gtcttcacag ctcctaccca tgcgggaatg caaaatcaaa atttcaagca
     1681 ttcctatgcc gtagcccttt gtttggactt cgatgcgcag cctgagggat ctaaaaatcc
     1741 ctcataccga ttcaacgaag tttgggtcga gagaaaggcg ttcccgcgag cagggcccct
     1801 ccgcagtttg ataactgtgg ggctgctcga cgaagctgac gatctttgat cgccattgat
     1861 gtaccccatt aatttgggat gctaaagtca tttaatgctg acctccactg ggtggattaa
     1921 ggtcaaggta tgaagtccta ttcgctcctg ataggatcga cttcatattg cttatatatg
     1981 tgctaacgca catatataaa tgctcatgca aaactgcatg aatgccccta agggatgc
//