LOCUS       FR715042                2037 bp    RNA     linear   VRL 31-MAY-2011
DEFINITION  Alfalfa mosaic virus RNA3 segment complete sequence, genomic RNA,
            isolate Tec1.
ACCESSION   FR715042
VERSION     FR715042.1
KEYWORDS    complete viral segment.
SOURCE      Alfalfa mosaic virus
  ORGANISM  Alfalfa mosaic virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Bromoviridae; Alfamovirus.
REFERENCE   1
  AUTHORS   Parrella,G., Acanfora,N., Orilio,A.F. and Navas-Castillo,J.
  TITLE     Complete nucleotide sequence of a Spanish isolate of alfalfa
            mosaic virus: evidence for additional genetic variability
  JOURNAL   Arch. Virol. (2011) In press
   PUBMED   21327783
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2037)
  AUTHORS   Parrella,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-OCT-2010) to the INSDC. Parrella G., Istituto per la
            Protezione delle Piante, CNR- National Research Council, Via
            Universita 133 - Portici (NA), 80055, ITALY
FEATURES             Location/Qualifiers
     source          1..2037
                     /mol_type="genomic RNA"
                     /country="Spain:Almeria"
                     /collected_by="Giuseppe Parrella"
                     /identified_by="Giuseppe Parrella"
                     /segment="RNA3"
                     /host="Tecomaria capensis"
                     /db_xref="taxon:12321"
                     /isolate="Tec1"
                     /organism="Alfalfa mosaic virus"
     gene            1..1143
                     /gene="3a"
     5'UTR           1..240
                     /gene="3a"
     CDS             241..1143
                     /function="movement protein, cell-to-cell movement"
                     /protein_id="CBX36146.1"
                     /gene="3a"
                     /db_xref="UniProtKB/TrEMBL:F2QAH2"
                     /codon_start=1
                     /product="30 kDa protein"
                     /translation="MENTKTNASGSGISSSSSFSVSYAEEMLLADEVSKINSMSILGP
                     NQLKLCTQLVLSNGAAPVVLSLVSKEKKSILNRMLPKIGQRMYVHHSAIYLLYMPNIL
                     KSSSGSITLKLFNEATGELVDVDTDHDATQACIFAGRYPRSILAKDAAKGHDLKLVVH
                     AVASTNANSAVGVLYPIWEDELSRKQILERGADFLKFPIAETEPVRDLLNAGKLTDFV
                     LDRTRLGVGSKKDPNPVLLEPRAKIAGKAKTVFIPEGLGVPNTTISGISPMVRIDAGS
                     PKGLGVPKGFTYESFIKDEILPDH"
     misc_feature    1144..1192
                     /note="intergenic region"
     gene            1193..2037
                     /gene="CP"
     CDS             1193..1858
                     /function="encapsidation, movement"
                     /protein_id="CBX36147.1"
                     /gene="CP"
                     /db_xref="UniProtKB/TrEMBL:F2QAH3"
                     /codon_start=1
                     /product="coat protein"
                     /translation="MSSSQKKAGGKAGKPTKRSQNYAALRKAQLPKPPALKVPVAKPT
                     NTILPQTGCVWQSLGTPLSLSSSNGLGVRFLYSFLKDFAAPRILEEDLVFRMVFSITP
                     SHAGSFCLTDDVTTEDGRAVTHGNPMQEFPHGVFHANEKFGFELVFTAPTHAGMQNQN
                     FKHSYAVALCLDFDAQPEGSKNPSYRFNEVWVERKAFPRAGPLRSLITVGLLDEVDDL
                     DRH"
     3'UTR           1859..2037
                     /gene="CP"
ORIGIN      
        1 gttttaatac cattttcaaa atattccaat tcaactcaat taacgctttt acagtgtaat
       61 tcgtactttt cgtaagtaag tttctgtaaa agcgtttctt gttttaattt ggtctaacac
      121 gtaattcgta ctcttcgtga gtaagttgtg ttagccatac ctatccttta aatttctgtc
      181 aatttaaaaa gaaaatcatt cccattcgcg taattcgtac tcttcgtgag taagttgcaa
      241 atggagaata caaaaacaaa tgcctcgggt tctggaatat cttcttcctc cagcttttca
      301 gtgtcttatg ctgaggaaat gttactagct gatgaagttt caaagataaa ctcaatgtcg
      361 atcctgggtc ccaatcagct aaagctctgc actcaattgg tgctgtctaa tggagcagca
      421 cctgtagttc taagccttgt gtcaaaggaa aagaaatcga ttttaaatcg tatgcttcca
      481 aaaattggac agaggatgta cgtccatcac tcggctattt acctccttta tatgccaaac
      541 atactaaaaa gttcttcagg gagcatcacc ttgaaacttt ttaatgaagc aactggagag
      601 ttagtggatg ttgacaccga ccatgatgct acccaagcat gtatttttgc tggacgttac
      661 ccccggagta ttctggcgaa agatgctgcg aaaggacacg acttaaaatt agtcgtccac
      721 gcggttgctt cgaccaatgc gaactctgcc gtcggtgttc tataccccat ctgggaagat
      781 gagttgagca gaaagcagat cctcgaaagg ggtgccgatt ttctaaagtt tccaattgct
      841 gagaccgaac cagtccgcga tctcttaaat gctggaaaat tgacggactt cgttcttgat
      901 aggacgaggt tgggcgtggg atcaaagaag gatcccaatc cggttcttct agaaccacga
      961 gctaagattg ccgggaaggc aaagacagtt tttattcccg aaggtctcgg tgttcctaat
     1021 accactataa gtggtatatc accgatggtg cgaatagatg ccggttctcc aaagggtctt
     1081 ggagttccga aagggtttac gtatgaaagt tttattaaag atgaaatttt acctgatcat
     1141 tgatcggtaa tgggccgttt ttatttttaa ttttctttca aatacttcca tcatgagttc
     1201 ttcacaaaag aaagctggtg ggaaagctgg taaacctact aaacgttctc agaactatgc
     1261 tgctctacgc aaagctcaac tgccgaagcc tccggcgttg aaagtcccgg ttgcaaaacc
     1321 gacgaatact atactgccac agacgggctg tgtgtggcaa agcctcggga cccctctgag
     1381 tctgagctct tcaaatgggc tcggtgtgag attcctttac agttttctga aggatttcgc
     1441 agcgccccgg atcctcgaag aggatctggt tttcaggatg gtgttttcta taacaccgtc
     1501 ccatgccggc tctttttgtc tcactgatga cgtgacgact gaggatggca gggccgttac
     1561 gcatggtaat cccatgcagg aatttcctca tggcgttttt cacgccaatg agaagttcgg
     1621 gtttgagctg gtcttcacag ctcccaccca tgcgggaatg caaaatcaaa atttcaagca
     1681 ttcctatgcc gtagccctct gtctggactt cgacgctcag cctgagggat ctaagaatcc
     1741 ctcataccga ttcaacgaag tttgggtcga gagaaaggct tttccgcgag cagggcccct
     1801 ccgcagttta ataactgtgg ggctgctcga cgaagttgac gatcttgatc gtcattgatg
     1861 taccccatta atttgggatg ctaaagtcat ttaatgctga cctccactgg gtggattaag
     1921 gtcaaggtat gaagtcctat tcgctcctga taggaacgac ttcatattgc ttatatatgt
     1981 gctggtgcac atatataaat gctcatgcaa aactgcatga atgcccctaa gggatgc
//