LOCUS NC_024009 2772 bp DNA circular VRL 15-APR-2014 DEFINITION Allamanda leaf mottle distortion virus isolate Al-K1 segment DNA-A, complete sequence. ACCESSION NC_024009 VERSION NC_024009.1 DBSOURCE BioProject accession PRJNA244665 KEYWORDS RefSeq. SOURCE Allamanda leaf mottle distortion virus ORGANISM Allamanda leaf mottle distortion virus Viruses; ssDNA viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. REFERENCE 1 (bases 1 to 2772) AUTHORS Shilpi,S., Tarafdar,J. and Mandal,B. TITLE Molecular characterization of a novel begomovirus from Allamanda cathartica JOURNAL Unpublished REFERENCE 2 (bases 1 to 2772) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2772) AUTHORS Shilpi,S., Tarafdar,J. and Mandal,B. TITLE Direct Submission JOURNAL Submitted (24-NOV-2012) Plant Virology Unit, Division of Plant Pathology, Indian Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012, India COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KC202818. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2772 /mol_type="genomic DNA" /country="India: Kalyani, West Bengal" /isolation_source="leaves showing mottling and distortion" /collected_by="B. Mandal" /segment="DNA-A" /collection_date="Jan-2012" /host="Allamanda cathartica (golden trumpet)" /db_xref="taxon:1317107" /isolate="Al-K1" /organism="Allamanda leaf mottle distortion virus" gene 143..490 /locus_tag="DU24_gp1" /db_xref="GeneID:18995867" /gene="AV2" CDS 143..490 /locus_tag="DU24_gp1" /protein_id="YP_009026392.1" /gene="AV2" /db_xref="GeneID:18995867" /codon_start=1 /product="AV2" /translation="MWDPLVNEFPETVHGFRCMLAVKYLHLVADTYSPDTVGYDLIRD LICILRSRNYVEAQTRYNHFHPRLEGSTEAELRQSRIEPCLCPYCPRHQIKSMGQQAH EQKAQTVQDVQKP" gene 303..1073 /locus_tag="DU24_gp2" /db_xref="GeneID:18995862" /gene="AV1" CDS 303..1073 /locus_tag="DU24_gp2" /protein_id="YP_009026393.1" /gene="AV1" /db_xref="GeneID:18995862" /codon_start=1 /product="coat protein" /translation="MSKRKPDIIISTPGSKVRRRLNFDSPGSSRAYVPTVRVTKSSLW ANRPMNRKPRLYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLT HRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFD NEPSTATVKNVYRDRYQVLRKWHVTVTGGLYASKEQALVKKFVRVNNHVVYNQQEAGK YENHSENALMLYMACTHASNPVYTTLKIRIYFYDSVSN" gene complement(1070..1474) /locus_tag="DU24_gp3" /db_xref="GeneID:18995863" /gene="AC3" CDS complement(1070..1474) /locus_tag="DU24_gp3" /protein_id="YP_009026394.1" /gene="AC3" /db_xref="GeneID:18995863" /codon_start=1 /product="replication enhancer protein" /translation="MDSRTGEPITAAQAMNGVYIWEVTNPLYFKILNHDQRPFNMNHD IIHIRIQFNHNLRKELGIMKCFLGLTICTRLQPQTGHFLRVFRTHVLKFLDRLGVISI NNCIRAFKHVLYDVLHDTIDVIEDHDIKFKIY" gene complement(1215..1622) /locus_tag="DU24_gp4" /db_xref="GeneID:18995864" /gene="AC2" CDS complement(1215..1622) /locus_tag="DU24_gp4" /protein_id="YP_009026395.1" /gene="AC2" /db_xref="GeneID:18995864" /codon_start=1 /product="transcriptional activator protein" /translation="MQNSSPSQSHCTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVH INCHNHGFTHRGTHHCSSGNEWRVYLGGNKSPLFQDPQPRPEAIQHEPRHHPHQNPVQ SQPQEGTGDNEVFLGLDDLHSFTTSDWAFLTSI" gene complement(1552..2664) /locus_tag="DU24_gp5" /db_xref="GeneID:18995865" /gene="AC1" CDS complement(1552..2664) /locus_tag="DU24_gp5" /protein_id="YP_009026396.1" /gene="AC1" /note="Rep" /db_xref="GeneID:18995865" /codon_start=1 /product="replication associated protein" /translation="MGTQSPQFPQSFESTQFNMPRVNSFQVKAKNIFLTYPKCPIPKE QMLELIKSIHCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKAQFRNPRHFDVTHPHNS SHFHPNFQGAKSSSDVKSYIEKDGDYIDWGEFQVDGRSARGGQQRVNDAAAEALNSGS ADAALAIIREKLPKDFIFQYHNLKNNLDRIFAPPMEVYVSPFLSSSFDQVPEPIEEWA SANVMGPAARPLRPKSIVIEGDSRTGQTMWARSLGPHNYLCGHLDLSPKIYSNASWYN VIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLD EEKNSALRSWAIKNAEFITLTEPLYSGANQGPTQSC" gene complement(2196..2453) /locus_tag="DU24_gp6" /db_xref="GeneID:18995866" /gene="AC4" CDS complement(2196..2453) /locus_tag="DU24_gp6" /protein_id="YP_009026397.1" /gene="AC4" /db_xref="GeneID:18995866" /codon_start=1 /product="AC4 protein" /translation="MGLCISMPSSSSRVRPSSETPDISMSLTLITPPISTQISRELSP HPMSSPTSRRTVITSTGVSFRSMEDLLEEVNRELMMLLQKL" ORIGIN 1 accggatggc cgcgcttttt tgtccccttg tgggccccac caagtggacc atgtacacgt 61 ggtccaatga aaaccactcc tgcaagctta gctgtgggtg ggccccatat ataattgctt 121 gctgagtaag tttgttgtaa acatgtggga cccactagta aacgagtttc cagaaactgt 181 tcatgggttt aggtgcatgt tggcagtgaa atatctgcat ctagttgcag atacgtattc 241 tccagatacg gtgggatacg acctaatacg tgatttaatt tgtattttac gttccaggaa 301 ttatgtcgaa gcgcaaacca gatataatca tttccacccc aggctcgaag gttcgacgga 361 ggctgaactt cgacagtcca ggatcgagcc gtgcctatgt ccctactgtc cgcgtcacca 421 aatcaagtct atgggccaac aggcccatga acagaaagcc cagactgtac aggatgtaca 481 gaagccctga tgtgcctagg ggatgtgaag gcccatgtaa ggtccagtcg tttgagtcca 541 ggcatgatgt cgtccatatt ggtaaggtaa tgtgtattag tgatgttact cgtggaactg 601 ggctgaccca tagggttggc aagaggttct gtgtgaagtc tgtctatgtc ttgggtaaga 661 tatggatgga tgagaacatc aagaccaaga atcacacgaa cagtgtgatg ttcttccttg 721 tacgtgatag gcgtcctgtt gataaacccc aagactttgg ggatgtgttc aatatgttcg 781 acaatgagcc cagtacggcg accgtgaaga atgtatacag ggatcgatac caggttctga 841 ggaagtggca tgtcactgtg acagggggtc tatatgcatc gaaggaacag gcattggtta 901 agaagttcgt tagggttaac aaccatgtgg tgtacaacca acaggaggca gggaaatatg 961 aaaaccatag tgagaatgca ttgatgttgt atatggcttg tactcatgcg agtaaccctg 1021 tatataccac actgaagata cggatctatt tttatgattc agtatcgaat taataaattt 1081 taaattttat atcatgatcc tcaattacat caattgtgtc atggagtaca tcatataata 1141 catgtttaaa tgccctaata caattattta tactaatcac tcctaatcta tctaaaaact 1201 ttaaaacgtg agtcctaaat actcgtaaga aatgcccagt ctgaggttgt aaacgagtgc 1261 agatcgtcaa gcccaagaaa cacttcatta tccccagttc cttcctgagg ttgtgattga 1321 actggattct gatgtggatg atgtcgtggt tcatgttgaa tggcctctgg tcgtggttga 1381 ggatcttgaa atagagggga tttgttacct cccagatata cacgccattc attgcctgag 1441 ctgcagtgat gggttcccct gtgcgtgaat ccatggttgt ggcagttgat gtgtacgtag 1501 tatgagcacc cacagtttag atcaaccctc ttacgccgga tggctctacg cttagcagct 1561 ctgtgttgga ccttgattgg cacctgagta cagtggctct gtgagggtga tgaattctgc 1621 attctttata gcccaagacc ttagtgctga gttcttttcc tcgtctaaga actctttata 1681 gctggagttg ggcccaggat tgcataggaa gatagtggga atgccccctt taatttgaac 1741 tggcttcccg tacttggtgt tgctttgcca gtccctttgg gcccccatga actctttaaa 1801 gtgctttagg tagtgggggt ctacgtcatc aatgacgttg taccaggagg catttgaata 1861 gattttaggg ctcagatcta aatggccaca taagtaatta tgtggtccca aagacctggc 1921 ccacatagtc tggcccgtac gactatcacc ctcgatgacg atacttttag gtctcaatgg 1981 ccgcgcagcg ggacccatca catttgcaga ggcccattcc tctatgggct ctggaacttg 2041 atcaaaggaa gaagaaagaa aaggggaaac ataaacctcc attggaggtg caaaaatcct 2101 atctaaatta ttttttaaat tatgatattg aaaaataaaa tctttaggga gtttctccct 2161 aattattgcc agagcagcat cagcggaccc tgaattcaga gcttctgcag cagcatcatt 2221 aactctctgt tgacctcctc tagcagatct tccatcgacc tgaaactcac cccagtcgat 2281 gtaatcaccg tccttctcga tgtaggactt gacatcggat gaggacttag ctccctggaa 2341 atttgggtgg aaatgggagg agttatgagg gtgagtgaca tcgaaatgtc tggggtttct 2401 gaactgggcc ttacccttga actggatgag ggcatggata tgcagagacc catcttggtg 2461 tttttcttgt gccactcgga taaataattt atctgaggga cagtgtatgg atttgatgag 2521 ttcgagcatt tgctcttttg gaattgggca ttttggatat gtaaggaata tgtttttggc 2581 tttaacttgg aaggaattaa cacgcggcat attgaattgg gtgctctcga aactctgtgg 2641 gaattggggg ctttgggtgc ccatttatat ggagcaccca aatggcaaat tggtaatttt 2701 agaactttaa tttgaaatta gaaattcaaa attcaaattt caaatcccca aagcggccat 2761 ccgtataata tt //