LOCUS NC_010253 3343 bp RNA linear VRL 08-DEC-2008 DEFINITION Allpahuayo virus segment S, complete sequence. ACCESSION NC_010253 VERSION NC_010253.1 DBSOURCE BioProject accession PRJNA28323 KEYWORDS RefSeq. SOURCE Allpahuayo mammarenavirus ORGANISM Allpahuayo mammarenavirus Viruses; ssRNA viruses; ssRNA negative-strand viruses; Arenaviridae; Mammarenavirus. REFERENCE 1 (bases 1 to 3343) AUTHORS Moncayo,A.C., Hice,C.L., Watts,D.M., Travassos de Rosa,A.P.A., Guzman,H., Russell,K.L., Calampa,C., Gozalo,A., Popov,V.L., Weaver,S.C. and Tesh,R.B. TITLE Allpahuayo virus: a newly recognized arenavirus (arenaviridae) from arboreal rice rats (oecomys bicolor and oecomys paricola) in northeastern peru JOURNAL Virology 284 (2), 277-286 (2001) PUBMED 11384226 REFERENCE 2 (bases 1 to 3343) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JAN-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3343) AUTHORS Moncayo,A.C., Hice,C.L., Watts,D.M., Travassos de Rosa,A.P.A., Guzman,H., Russell,K.L., Calampa,C., Gozalo,A., Popov,V.L., Weaver,S.C. and Tesh,R.B. TITLE Direct Submission JOURNAL Submitted (07-NOV-2000) Pathology, University of Texas Medical Branch, 301 University Blvd., Galveston, TX 77555-0609, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY012687. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3343 /mol_type="genomic RNA" /country="Peru: Northeast" /segment="S" /host="Oecomys bicolor" /db_xref="taxon:144752" /strain="CLHP-2472" /organism="Allpahuayo mammarenavirus" gene 33..1718 /locus_tag="Allpahuayo_sSgp1" /db_xref="GeneID:5848531" /gene="N" CDS 33..1718 /locus_tag="Allpahuayo_sSgp1" /protein_id="YP_001649220.1" /gene="N" /db_xref="GeneID:5848531" /codon_start=1 /product="nucleocapsid protein" /translation="MSSENVPSFRWTQSLRRGLSNWTHAVKGDVLADARAIVSALDFH QVAQVQRMMRKDKRSEADLTRLRDMNKEVDALMMMRSAQKDNILKVGGLSKDELMELA SDLDKLRKKVQRTEGGGQPGVYAGNLTSSQLNQRSEILKMMGMGTGPRGPVGGVVKVW DIKDSSLLVNQFGSMPALTIACMTQQGGEQMNDVVQALTSLGLVYTVKYPNLSDLEKL TEKHPCLKLITQEPAQINISGYNLSLSAAVKADACMIDGGNMLETLQVKPSMFSTLIK TILEVKNREGMFVSPSPGQRNPYENILYKVCLSGDGWPYIGSRSQIKGRAWENTTVDL EGKPSVNHPPVRNGGSPDLKQIPKTKEDEVIRAIEQLDPRGTTWVDIEGPPGDPVELA LFQPETGNYLHCYRRPHNENAFKDQSKFSHGLLLKDLADTQPGLISCIIRHLPNNMVL TAQGNDDIIKLLEMHGRRDIKVLDVKLSSDQARLMEDVVWERYNMLCVKHTGLVIKKK KKGAAPGSANPHCALLDCIMFDATVTGYLRDQKPKRLLPLDTLYRDNANLINL" gene complement(1789..3312) /locus_tag="Allpahuayo_sSgp2" /db_xref="GeneID:5848530" /gene="GPC" CDS complement(1789..3312) /locus_tag="Allpahuayo_sSgp2" /protein_id="YP_001649221.1" /gene="GPC" /db_xref="GeneID:5848530" /codon_start=1 /product="glycoprotein precursor" /translation="MGQVVTFLQSLPEVINEAINIALIAISIICILKGLVNFWKCGVV QLAIFLCLAGRKCDGLMIDRRHELSHVELNLTRMFDNLPQSCSKNNTHHYYKGPKGTT WGIELTLTNTSLDSYANMSRIRSLAFGNITNCDKTGEAGHTLKWLLNELHFNVLHVTR HVGARCRVSEGAGLLIQYNLTIGDHGGEVGRHLIASLAQIIGDNKAAWVGKCDSHCTM DGKCNYTNCEGFTHYNYLIIQNTTWENHCSYSPMSTIRMALNKVAYSSVSRQLLGFFT WDISDSSGAHVPGGYCLEQWAIVWAGIKCFDNAVMAKCNKDHNVEFCDTMRLFDFNQN AIKTLQLNVENSVNLLKRSINGLISDSLVIRNSLKQLAKIPYCNYTKFWYVNDTITGK HSLPQCWLMRNGSYLNETHFKNEWLWESQNLYNEMLLKEYEDRQGKTPIALTDICFWS LVFFTSTVFLQLVGIPTHRHLVGEGCPKPHRITSNSLCACGYYKIPKRPTRWVRKGK" ORIGIN 1 tttaggataa cgctttgcta acgatctcga acatgagttc tgagaatgta ccctcattcc 61 gctggactca atcccttaga aggggtctgt ccaactggac ccatgctgtg aagggagacg 121 ttcttgcgga tgcgagggcc atagtctctg cgcttgactt ccaccaagtt gcacaagtgc 181 aaagaatgat gaggaaggat aaaaggagcg aggcggatct gaccagattg agagacatga 241 ataaagaggt tgacgctctt atgatgatga ggtctgcaca aaaagacaat atcttgaaag 301 tgggtggatt gtcaaaagat gagttgatgg agctggcttc tgacctagac aaactgagga 361 agaaggtcca gaggacagaa gggggtggtc aaccaggtgt atatgcaggg aacctaactt 421 catctcagct gaatcagaga tcagaaatcc tgaagatgat ggggatgggt acaggtccaa 481 gaggcccagt tggaggtgtt gtgaaggttt gggacatcaa ggacagcagc ctccttgtca 541 atcaatttgg ctctatgcca gcactaacca tcgcctgcat gacacagcaa ggaggagaac 601 agatgaatga tgtggttcaa gccctaacat ctctgggact tgtgtacaca gtgaagtatc 661 cgaacttgtc tgacttagag aaattgaccg agaaacatcc ctgtctgaag ctcatcacac 721 aagagcctgc tcagatcaac atttcggggt acaatctaag cttgtctgct gcagtcaagg 781 cggatgcttg tatgattgat ggtggcaaca tgttggaaac tttacaggtt aaaccctcaa 841 tgtttagcac ccttatcaag acaattcttg aagtgaaaaa cagagaaggc atgtttgtga 901 gtccatcccc tgggcagaga aatccctacg aaaacatatt atacaaggtt tgtctgtcag 961 gagatggttg gccgtacatt ggctcaagat cacaaatcaa aggaagagca tgggagaaca 1021 ccactgttga tcttgagggc aaaccatcag tgaaccaccc tccagtgagg aatggtggtt 1081 caccagatct aaaacaaata cccaagacaa aggaagatga ggtgataaga gccattgaac 1141 agcttgaccc gagaggaaca acctgggtgg atattgaggg tccaccaggt gatcctgttg 1201 aacttgctct atttcaacca gaaactggca attacttgca ttgctacaga agaccacaca 1261 atgaaaacgc attcaaggac cagagcaagt tctctcatgg cttgttgctc aaagatctgg 1321 ctgatacaca gccaggactc atctcgtgca taataagaca ccttccaaac aacatggtgt 1381 tgactgcaca aggtaatgat gacataatca aactacttga gatgcatgga agaagagaca 1441 ttaaggtgtt ggatgtgaag ttgtcatcag atcaagctcg tctaatggag gatgtggtat 1501 gggaacgtta caacatgctc tgcgtgaaac acactgggct cgtcattaag aagaagaaga 1561 agggtgcagc tccaggatca gccaatcccc attgcgcatt gttggactgt ataatgtttg 1621 atgccactgt cacaggctat cttcgagacc aaaaaccgaa aagacttctt ccacttgaca 1681 ctctatacag agacaatgct aatctaatta acctttaaaa ccttctaatt gaaggcctcg 1741 atgtcacacc ccctaggggg tgtgacatcg aggcgctggg agagcgaatt acttgccttt 1801 tctgacccat ctagtcggtc tttttggaat tttatagtaa ccgcaggcac acaatgagtt 1861 tgatgtaatc ctatggggtt ttgggcaccc ttcgccgact aagtgtcgat gtgttgggat 1921 gccaacaagc tgcaagaaca ctgtgctggt gaagaaaacc aaggaccaga agcagatgtc 1981 agttaaggca atgggtgtct ttccctgcct atcctcatat tctttcagca gcatctcatt 2041 gtacaaattt tgactttccc acaaccactc atttttaaag tgtgtctcat ttaagtaaga 2101 gccattgcgc ataagccaac attgaggcaa actatgtttg cctgtgatgg tgtcattcac 2161 ataccagaac ttagtgtaat tacagtaagg aatcttggct agctgcttca aactattcct 2221 aatcaccaaa ctatctgata tcaaaccatt aatgctcctc ttcagaagat ttacactgtt 2281 ctcaacattc agctgaaggg ttttaatggc gttttggttg aagtcaaaca gtctcattgt 2341 gtcacaaaac tcaacattgt ggtccttgtt gcactttgcc atcacagcat tatcaaaaca 2401 ttttattcct gcccatacta ttgcccattg ttctaaacaa tatccacctg ggacatgtgc 2461 tccgcttgag tccgagatgt cccatgtgaa gaatccaagt agttgtctcg acacagaact 2521 ataagctact ttgttcaaag ccatccgaat tgttgacatt ggtgagtaag agcaatgatt 2581 ctcccaggtt gtattctgaa tgatgaggta attatagtgt gtgaatccct cacagttggt 2641 ataattgcat ttgccatcca ttgtgcaatg gctgtcacac tttcccaccc aagctgcttt 2701 gttgtcacca atgatctgag caagagaagc aatgagatgt ctgccgactt cacctccatg 2761 atctccaata gtgaggttgt attgtatgag cagcccagca ccctctgaca ctctgcatct 2821 cgctccaaca tgtctggtga catggagcac attgaagtga agctcattaa gcagccactt 2881 gagtgtgtgc cctgcttcac ctgtcttgtc acagttggtg atgttcccga atgccaaact 2941 tctgatcctg ctcatattag cataactgtc aagagaagtg tttgtaagag tcagttcaat 3001 tccccaggtg gttccttttg ggcctttata atagtggtgt gtgttgtttt tgctgcaaga 3061 ttgagggagg ttgtcaaaca ttctagttag gtttagttcg acgtgtgaga gctcatgtct 3121 tctgtcaatc atcagaccat cacattttct acctgcaagg caaaggaaaa ttgcgagttg 3181 cacaacccca cacttccaaa agttgaccaa tcctttcaga atacagataa tagaaatggc 3241 aatcaaggca atgttaattg cctcattgat cacctcgggt agagactgta gaaatgtgac 3301 aacttgtccc attttggagt cacacaggcg tgatcaagga aat //