LOCUS LC107515 6604 bp RNA linear VRL 08-APR-2016 DEFINITION Alternanthera mosaic virus genomic RNA, complete genome, isolate: Ac. ACCESSION LC107515 VERSION LC107515.1 KEYWORDS . SOURCE Alternanthera mosaic virus (AltMV) ORGANISM Alternanthera mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Alphaflexiviridae; Potexvirus. REFERENCE 1 AUTHORS Iwabuchi,N., Yoshida,T., Yusa,A., Nishida,S., Tanno,K., Keima,T., Nijo,T., Yamaji,Y. and Namba,S. TITLE Complete Genome Sequence of Alternanthera mosaic virus, Isolated from Achyranthes bidentata in Asia JOURNAL Genome Announc 4 (2), e00020-16 (2016) PUBMED 26988034 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6604) AUTHORS Namba,S., Yamaji,Y., Maejima,K. and Hashimoto,M. TITLE Direct Submission JOURNAL Submitted (24-DEC-2015) Contact:Shigetou Namba The University of Tokyo, Graduate School of Agricultural and Life Sciences; 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan FEATURES Location/Qualifiers source 1..6604 /mol_type="genomic RNA" /country="Japan" /collection_date="2015" /host="Achyranthes bidentata" /note="Alternanthera mosaic virus genomic RNA excluding poly(A) tail" /db_xref="taxon:85454" /isolate="Ac" /organism="Alternanthera mosaic virus" gene 95..4720 /gene="RdRp" CDS 95..4720 /codon_start=1 /protein_id="BAU45629.1" /gene="RdRp" /translation="MAHFRSVLDQMNDPSLRAVIQEEAYREIKKTLTETKQYNPYAQD PAAADSLEKLGIETNPFSVRAHTHAAAKSIELDMYKIVGYSLPKENPITFLFMKRSKL QYFHRGPQHGDFFLNAWIEPKDVTRYAVADLFRPNITPQIQTRVAFMGDTLHFLPLSA IREIFNSSQKLQTLYATLVLPPEAMHRMHSLHPSIYELEFHDKNFIYKPGGHAGASYC HEYSQLQWLKVGKFEWCDKQWKKHYVTSQILETKGANHLFVFQRGNFSTPALRTFGVE TKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYVKSVKTVTERDIWAKVRQIIKTAELQ SYSAKELALIVNYYLLISKLDSVTCFDNILTGGALKRLFKPIVAWWSTFKGKIFGKEE FEQLMEALEWVDVTLSYRVETFSEVNPHNQPKVLFGYDWLDSETGAPGTEEEDAAGVP DEEDDSQEKYIRALQTLTRTLDQEMEPPEEEVTPTTTPAPPAANAQHEPTPSASTSDN PTNQAPTLPTVCSCPCGLELTIYKADFPPIPPLSHGDRLKNREAFFFSKDNAPYSYTG GSHASRGWPAFLDQILATAELQRPLPHFNQCLIQKFQRGASIPFHKDDESCYDADHQV LTINLTGEAEFKINCKAGTGSCLLGENHFHLSPPGFQTSHKHSVVSLSAGRISMTFRS TVKQNIVSEDGDSVEPDNLPWKAWLAKLRNLGFRGTQLQYDPNGALISPIESIKSLPK CSPEKVEASLLKMLNDQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKEWGHRF DSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDHPDAEVTIVLPTNELRLDWLKKLP AFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYVEAFSFYMSSSELLILTGDSKQSV HHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGTTSITQGH HPIPGLHLLVPSLYKKQAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYT ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPREEAPAPADP PKTHIPVDSAMPIYEDILEQMPEKHEREIFSEKHGHSNCVQTEDPFVQMFSHQQAKDE TLLWATIEARLVLSNPKANWQEYMEKKPIGDVLFGFYRQAMGLPKDPIAFEPQLWDSC MHEVQRTYLAKPVNMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTI ASFHQATVMLFGTMARYMRRMREVFQPKNIAINCEMTPEDLTEWATGPSGQWRFAGPS LANDFTAFDQSQDGAMLQFEILKAKHHSIPEDVLDAYLHIKTNSKIFLGTLAIMRLTG EGPTFDANTECNIAFTHAKFQIPPGTAQLYAGDDSAIDGNPPVRESFRMIEQKLKLRS KPVVAMQQKGDWAEFCGYRITPKGFIKDPKKLHASLVLERKKGNLKNVLRSYELDLAL AYQHRDELHELLSEEELRLHYDTVRTLVKSGGGEVLKTFLPKDESLY" /product="RNA-dependent RNA polymerase" gene 4704..5402 /gene="TGBp1" CDS 4704..5402 /codon_start=1 /protein_id="BAU45630.1" /gene="TGBp1" /translation="MNHFINLLIEEGYVRTNEILSDVLVVHAVAGAGKSTLIRKFIHQ HPQARAYTHGVPDPPNLEGRFIQPFKTPDPSHFNILDEYCAEPLTGAWSVLIADPLQH RAQALRPHYIKKESHRLGAATCRLLTQVGLEVHSHREEDEVDYKGVFEGPLYGTVIAL DATVRALLLKHGVHPLCPAEVLGSEFEETTVVSELPLSQIKFKHALYIALTRHRRILH VRAPPLPDSSSRPL" /product="triple gene block protein1" gene 5356..5688 /gene="TGBp2" CDS 5356..5688 /codon_start=1 /protein_id="BAU45631.1" /gene="TGBp2" /translation="MSGLPHSLTPPADHSKAVLAAVVGVSLALIINSFLVYRLPSPGD NIHNLPFGGSYRDGTKSIHYNSSRAQNTVSGVSPLLIVLILSALIYALSCRGGRGNTR LHRCPCCS" /product="triple gene block protein2" gene 5624..5815 /gene="TGBp3" CDS 5624..5815 /codon_start=1 /protein_id="BAU45632.1" /gene="TGBp3" /translation="MPYHVEVAVAILAFIGALVVLRPQPRGCLVSLTGHSATISGDCE SISPETIKALGEYLTGLRF" /product="triple gene block protein3" gene 5857..6480 /gene="CP" CDS 5857..6480 /codon_start=1 /protein_id="BAU45633.1" /gene="CP" /translation="MSNPFPQITQEQMASFTPSTTSNLLPSQEQLTTIASLLVAAKVP AASTTTVAMELVNFCYDNGSSAYTTVVGPSSIADVSLSQVANIVKASGTSLRKFCRYF APVIWNLRTDKLPPANWEANGFKPTEKFAAFDFFDGVENPAAMQPPGGLSRAPSQAER IANATNKQVNLFQAAAQDNNFASNSAFITKGQLSSNSPTIQYLPPPE" /product="coat protein" ORIGIN 1 gaaaagtaaa gcaaagcaaa gcaaagcaaa agaacagaaa gtccatactt ggcccccgag 61 gtgatcgatt acccatcccg gttagatcaa cagtatggcc cactttcgtt cagtacttga 121 tcaaatgaat gatcccagcc tacgggcggt cattcaagaa gaggcatacc gtgagattaa 181 gaaaacactc acggaaacta aacagtacaa tccatacgca caggatccgg cagctgccga 241 ctccttagaa aaattaggaa tagaaactaa ccctttttca gtgcgtgccc atactcatgc 301 ggccgcaaaa tcaatagaac ttgacatgta caaaatagtg ggttactccc tcccaaagga 361 gaatccaatt actttcttat ttatgaagag atccaaatta cagtacttcc acagaggccc 421 ccagcacgga gattttttcc taaacgcctg gattgagccc aaggatgtca cgaggtacgc 481 agtggccgat ctcttccgac ctaacattac cccacaaatc caaaccagag tggccttcat 541 gggagacaca ctacacttcc tccccctaag cgcaatcagg gaaatcttca acagctccca 601 aaaactccag acgctttacg caaccctggt gctgccccca gaggccatgc acagaatgca 661 ctccctccat ccaagtattt atgagctgga atttcacgac aagaacttca tctacaagcc 721 aggaggtcac gcaggagcct cctactgcca tgaatactca caactccagt ggctgaaagt 781 aggcaagttt gagtggtgtg acaaacaatg gaagaagcac tacgtcacct ctcaaattct 841 ggagacgaaa ggtgccaacc acctcttcgt ctttcagagg ggcaatttct ctacccccgc 901 tctcagaaca tttggcgttg aaaccaaatt tgtcaccctc ccacccatct tccttccaaa 961 aaaatacaac gcaaggtacc ccatcaaaaa aactgtggct caacagctgt ttctctacgt 1021 caagtctgtc aagacggtca ctgaaaggga catctgggcc aaggtacgac agatcatcaa 1081 gactgcagag ctccaaagct actctgccaa ggaactggcc ctcattgtca attattacct 1141 gcttatctcc aagctggact cagtcacctg cttcgacaac attctaactg gaggggcact 1201 caaaagactg tttaaaccca tcgtggcttg gtggtctacc ttcaagggaa aaattttcgg 1261 aaaggaggaa tttgagcagc tcatggaggc tctggagtgg gtggacgtaa ccttgtccta 1321 cagagtggaa acttttagtg aggtcaaccc ccacaatcag cccaaagttc tgttcgggta 1381 tgactggctg gactccgaaa ctggggcccc aggtaccgag gaggaggatg cagctggggt 1441 cccagatgag gaagatgact cacaagagaa gtatataaga gctctacaga ccctgaccag 1501 aactctcgac caagagatgg aacctcccga ggaggaggtc acacccacca ccacccctgc 1561 tccaccagcc gccaatgctc agcatgagcc cacaccatcg gcgtccacct ctgataaccc 1621 cactaaccag gcccccactc tgcccacagt gtgctcctgc ccgtgcggcc ttgaattgac 1681 aatctacaag gcggactttc caccaattcc accactctcg catggggacc gactgaagaa 1741 tagagaagct ttcttcttct ctaaagacaa cgctccctac agctacaccg gaggttcaca 1801 cgcttcccgt ggctggcccg ccttcctcga ccagatcctg gccaccgccg agctgcagag 1861 accactcccc cactttaacc aatgtctgat tcagaaattc cagcgtggtg cctccatccc 1921 cttccataag gacgatgagt cttgctacga cgcagaccac caggtactca cgattaatct 1981 cacaggggag gctgaattta aaatcaattg caaggcagga actggctctt gcttgcttgg 2041 ggagaaccac ttccaccttt ccccacccgg cttccagact tcacacaagc acagtgtggt 2101 ctcactctct gcgggacgaa tctccatgac cttccgctca actgtcaaac aaaatattgt 2161 ttcggaagat ggggacagcg ttgaaccaga caacctgccc tggaaagcct ggctggccaa 2221 attgcgaaat cttggcttcc ggggcacaca gctgcagtac gatcccaatg gagcactcat 2281 ttcacccatt gagtccatca agtctctccc aaagtgctca ccagagaaag ttgaggcatc 2341 attgctgaag atgctcaatg accaagctag ggcccccact cccttttctc caagcccaat 2401 tagagccaaa gcttactcgt cggatgtcaa aaactctaga atcggagcac tgctcaggca 2461 acaaggaaaa gagtggggtc accggttcga ttcgctcgtg gagaatggtc aacgccaatt 2521 ggccatcagc gttattcatg gggcaggcgg ttcaggaaaa tccagggctc tccaaatgta 2581 cctcaaggac cacccagacg ctgaggtcac catcgttctg cccactaacg agctgagact 2641 ggactggctc aagaaactgc cagccttccc tgccgaccaa atcaaaacct tcgagaaggc 2701 gctcctggcc cccaccaaac caacagtgat tttcgatgac tacggcaaac ttccagcagg 2761 gtatgtggag gctttctcct tctacatgtc atcttcagag ttgctgatcc tcacgggaga 2821 ctctaagcag agcgttcacc acgagtcaaa tgagaacgcc atgagcagtc tcattgagcc 2881 cttcacattg gaggctgaca agtactcccg gtactacatc aatgccaccc acagaaataa 2941 gagggatctt gcaaacaaac tgggagtcta ctcagaagtc acgggtacca catcaatcac 3001 acagggacac caccccattc ctggacttca cctactggtc ccctccttat acaagaagca 3061 ggccttcagt gaaatgggcc acaaagtgtc cacctatgcg ggatgccagg ggcttacggc 3121 ccctagagta cagattctcc tatctgagga gacaagcatg tgctcccgcg aggtcattta 3181 caccgcactc tcccgggctg tgcattccat tcacttcgtc aactgcggcc ccaataatca 3241 ggccttctgg gccaagcttg agagcacccc ttatctcaag gctttcctgt ctacactgag 3301 ggaagacgca gcccccgtgg tcaaaccacg ggaggaggct ccagcacctg ccgacccccc 3361 aaaaacacac atccctgtcg actcagccat gcccatttac gaggacatct tggagcaaat 3421 gccggagaag cacgaaagag aaatattctc agagaagcat ggacacagca actgtgtgca 3481 aactgaagac cccttcgtgc agatgttcag tcaccagcag gccaaagatg aaacgctgct 3541 ttgggccacc attgaggctc ggcttgtgct ctcgaacccc aaggcaaact ggcaggaata 3601 catggagaaa aaacccattg gggatgtact cttcggcttc tacagacaag ccatggggct 3661 accaaaagac ccaattgcct ttgagcctca gctctgggac tcttgcatgc atgaggtaca 3721 gcgcacatat ttggcaaagc ccgtcaacat gctgaaaaat ggccaggcta ggcaatctcc 3781 agactacgac cccaacatga tatcgctctt cctgaagtca cagtgggtca agaaaatgga 3841 aaagttgggg gcactgaaga tcaagccagg acagacgatt gcctccttcc accaagccac 3901 agtcatgctc tttggcacga tggccagata catgaggcga atgagagagg tgtttcagcc 3961 caaaaacatt gccattaact gtgagatgac acctgaggac ctcaccgaat gggccaccgg 4021 cccctctggc caatggcgct tcgctggtcc ctctcttgcc aatgacttca cagccttcga 4081 ccaatcacag gatggtgcta tgctccaatt tgagatcctc aaggccaagc atcacagcat 4141 tccggaagat gtcctggacg catacctgca tatcaagaca aactcaaaaa tcttcctggg 4201 cactttggca attatgagac ttaccgggga ggggcccact ttcgacgcca acacggagtg 4261 caatatcgct ttcacccatg ccaagttcca gataccaccg ggcacggcac agttgtatgc 4321 gggggacgat tctgccatcg acggcaatcc tccagtcagg gagagtttcc gaatgattga 4381 acagaagctt aaactccgct ctaaacccgt ggttgccatg cagcagaaag gagactgggc 4441 agaattctgt ggctatcgta tcaccccaaa aggcttcatc aaagacccaa agaagctcca 4501 tgcaagcctg gtgctcgaga gaaagaaggg caatctgaaa aatgtgctca gatcctacga 4561 gctcgacctt gccctggcct atcagcatag agacgagcta catgagttac tctctgagga 4621 ggagctgcgt cttcactacg acacggttcg tacactagtt aagtcaggtg gaggagaggt 4681 tttgaaaact tttcttccca aagatgaatc actttattaa cctcctcatt gaagagggtt 4741 acgtccggac aaacgaaatc ctctctgacg tactggttgt ccacgccgtg gccggggctg 4801 gaaagtcaac cctcatccgc aagttcatcc accagcatcc ccaagctcga gcttacactc 4861 acggagtccc tgaccctcca aacctcgaag gtcgcttcat ccaacctttc aaaaccccgg 4921 acccaagcca tttcaatatc ctcgacgagt attgtgctga acccctcacc ggagcgtgga 4981 gcgtgctcat cgccgaccct ctgcagcatc gcgcgcaggc cctgcggccc cattacatca 5041 agaaagagtc acaccgcctg ggagccgcca cctgccgact cctcacccag gttggtcttg 5101 aagtccactc acaccgagag gaggacgagg ttgactacaa gggagtcttt gaaggtcctc 5161 tctacgggac cgtcatcgca ctagacgcca ccgtgagagc cctcctgctg aagcacggag 5221 ttcaccccct ctgcccagct gaagtactag gctccgagtt cgaggagaca acggtggtct 5281 ccgagctccc actgagtcag atcaagttca agcacgcact ctacatcgcc ctcacccgcc 5341 acagacgcat actccatgtc cgggctcccc cactccctga ctcctccagc cgaccactct 5401 aaagcagtct tagcagcagt tgtaggtgtt agtttagcct taataataaa ttcttttctc 5461 gtttataggt tgccctcgcc cggggataat atccacaatc ttccttttgg aggttcctac 5521 agagacggaa ccaagtctat ccactacaat tcatcccgtg cccagaacac agtctcagga 5581 gtctcaccgc tcttgatcgt ccttatcctg tcagcactga tctatgcctt atcatgtcga 5641 ggtggccgtg gcaatactcg ccttcatcgg tgcccttgtt gttcttaggc ctcaaccacg 5701 tggctgtcta gtgtccctca ctggccactc tgccaccatt agtggagact gtgaatccat 5761 ctcacccgaa accatcaagg ctcttgggga gtatcttacc gggcttaggt tttaactttt 5821 gtgtgattat ttattttccc agtctatata gtcaagatgt caaatccctt cccacagatc 5881 actcaggaac aaatggcctc attcacacca agcaccacat ccaatctact tccatctcag 5941 gaacagctga ccaccatcgc gagtcttctg gtcgccgcca aagttcccgc cgcttccacc 6001 accacagttg ccatggaact tgtcaacttc tgctacgaca acgggtccag tgcttacacc 6061 acagtggtgg gaccctcttc cattgctgat gtctcactgt cccaggtagc caatattgtc 6121 aaggcgtccg gcacctcact tcgaaagttc tgccgttact ttgctccagt catctggaat 6181 cttaggacgg acaaactacc gccggccaac tgggaggcga atggcttcaa gccgaccgag 6241 aaattcgcag ctttcgattt cttcgacggt gtggagaacc cggcggccat gcaaccacct 6301 ggaggattgt ccagggcacc aagccaggcc gagagaattg cgaacgcaac gaacaagcaa 6361 gtcaatctct tccaggccgc cgcccaggac aataacttcg ccagcaactc cgctttcatc 6421 accaaaggtc agctttcctc caactcaccc acaatccagt acctgccacc ccccgagtga 6481 tccgtgtcaa gtccaagccc gttgttttcg caattttgtt ggggctatcg agttttcaaa 6541 attgcttccg cttctgtaga cctaccttac agcctagtgt gcggtttaat acctatttac 6601 gcac //