LOCUS GQ179646 6607 bp RNA linear VRL 24-DEC-2009 DEFINITION Alternanthera mosaic virus isolate SP 3-1, complete genome. ACCESSION GQ179646 VERSION GQ179646.1 KEYWORDS . SOURCE Alternanthera mosaic virus (AltMV) ORGANISM Alternanthera mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Alphaflexiviridae; Potexvirus. REFERENCE 1 (bases 1 to 6607) AUTHORS Lim,H.S., Vaira,A.M., Reinsel,M.D., Bae,H., Bailey,B.A., Domier,L.L. and Hammond,J. TITLE Pathogenicity of Alternanthera mosaic virus is affected by determinants in RNA-dependent RNA polymerase and by reduced efficacy of silencing suppression in a movement-competent TGB1 JOURNAL J. Gen. Virol. 91 (PT 1), 277-287 (2010) PUBMED 20019006 REFERENCE 2 (bases 1 to 6607) AUTHORS Hammond,J., Lim,H.-S. and Reinsel,M.D. TITLE Direct Submission JOURNAL Submitted (19-MAY-2009) Floral and Nursery Plants Research Unit, National Arboretum, US Department of Agriculture, 10300 Baltimore Avenue, Building 010A, Beltsville, MD 20705, USA FEATURES Location/Qualifiers source 1..6607 /mol_type="genomic RNA" /country="USA: Maryland" /lab_host="Nicotiana benthamiana" /collection_date="2007" /host="Phlox stolonifera cv. Sherwood Purple" /db_xref="taxon:85454" /isolate="SP 3-1" /organism="Alternanthera mosaic virus" 5'UTR 1..94 CDS 95..4720 /codon_start=1 /protein_id="ACS28228.1" /translation="MAHFRSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQD PAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKL QYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSTTPEIQTRVAFIGDTLHFLPLGA IREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYC HEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVE TKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQ SYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEE FEQLMEALEWVDVSLSYKVETYSQANPNNQPKVMFGYEWLSTETGTPGTEEDAAPETP QEDEDPHERYIQALQTLTKALDQESAPPPTEPAQCSSTSNPQQEEHFRPPHNLHTDET PSCSGSSNSFACHCPCGTELKVFSAEFPPIPPLSHGDRLKNREAFFFSRDGTPYSYTG GSHASRGWPTFLDQILATAELVRPLPHFNQCLIQKYQRGASIPFHRDDEPCYDADHQV LTINLTGEAEFKISCKAGSGSCTLVENQFHLSPPGFQKTHKHSVVSLSAGRVSLTFRS TVKQSVTSEEGDCVEPDNLPWKAWLGKLRNLGFRGMQLQYDPNGALISPIESVKSLPK CSPEKVDPSLLKMLDNQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRF DSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLP TFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSV HHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGN HPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYT ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDP PKTHIPVDSAMPIYEDLLDQMREKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDE TLLWATIEARLVISNPKANWQEFMEKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESC IHEVQRTYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALRIKPGQTI ASFHQATVMLFGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPS LANDFTAFDQSQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTG EGPTFDANTECNIAFTHAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRS KPAIAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVLEKKRGNLKNVLRSYELDLAL AYQHRDELHELLSEEELRLHYDTVRTLVKSGGGEVLKTFLSKDESLY" /product="replicase" CDS 4704..5402 /codon_start=1 /protein_id="ACS28229.1" /translation="MNHFTNLLIEEGYVRTNEILSDTLVVHAVAGAGKSTLIRKFIHQ HPQARAYTHGVPDPPNLEGRFIQAFKNPDPNHFNILDEYCAEPPSGSWNVLIADPLQH RSQALRPHYIKRESHRLGVATCELLTRVGLPVLSNKTEDQVDYQGIFEGPLFGTVIAL DSTVRALLVKHGIPPLCPAEVLGSEFEQTTVVSEVPLSQVKFKHALYIALTRHKKSLH VRAPPLPDTPRRLL" /product="TGB1" CDS 5356..5688 /codon_start=1 /protein_id="ACS28230.1" /translation="MSGLPHSLTPPADYSKPVLAAAVGVSLALVINSFLVYRLPSPGD NIHQLPFGGSYRDGTKSIHYNSPRAQSQISGASPFLIILILSALIYALSCRGGHHRAR LHRCPCCS" /product="TGB2" CDS 5624..5815 /codon_start=1 /protein_id="ACS28231.1" /translation="MPYLVEAAITVLACIGVLAALRPGSHPCTILLTGHSATISGNCG PVAPETIRALGDYLTGLRF" /product="TGB3" CDS 5858..6481 /codon_start=1 /protein_id="ACS28232.1" /translation="MSTPFPQVTQEQMNAFTPHTTSNLLPSPEQLTTIANLLVAAKVP AASTTTIALELVNFCYDNGSSTYTAVVGPSSLAEVSLSQVANIVKASGTSLRKFCRFF APIIWNLRTDKTPPANWEANGFKPTEKFAAFDFFDGVENPAAMQPPGGLVRTPSQAER IANATNKQVNLFQAAAQDNNFASNSAFITKGQLSSNSPTIQYLPPPE" /product="coat protein" 3'UTR 6482..6607 ORIGIN 1 gaaaagtaaa gcaaagcaaa gcaaagcaaa ggaaccgaaa gtccatattt gcccttcgag 61 gagatcgatt acccatcccg gctagatcaa cagtatggcc cactttcgtt ccgttcttga 121 ccaaatgaat gaccccagcc ttcgggcggt catccaggaa gaagcttacc gcgaaataaa 181 gaaaaccatc gcggaaacca aacagtacaa cccttacgcc caggatccag cggcggctga 241 ctcattagaa aaattaggaa tagaatctaa ccccttctca gtccgcgctc atacacacgc 301 ggccgcgaag tcaatagaat tagacatgta caaaatcacg ggttactccc tcccgaagga 361 gaatccaatt actttccttt tcatgaagag gtccaaactt caatacttcc acagaggccc 421 acagcatgga gacttattcc ttaatgcttg tattgagcca aaggacgtca ccaggtacgc 481 cttagaagac ctctttaaac cctccacaac cccagaaatc caaaccagag tggcattcat 541 tggagacaca ctacacttcc ttcctctagg ggccatcaga gagatattta caagctcaca 601 aaagctccaa actctctatg caacaatggt actacccccc gaagccatgc acagaatgca 661 ctcaattcac cccagcatct acgagctaga attccatgaa aaaaatttta tatacaagcc 721 gggaggacat gccggggcgt cttattgcca cgaatactca caacttcagt ggctcaaggt 781 cggaaaattt gagtggtgcg acaagaaata tcagaagcac tacgtgacat cacagattct 841 ggaaaccaag ggtgcaaatc acctttttgt gttccagcgc ggcaatttcg ccacccctac 901 ctaccgaact ttcggggtag agacaaaatt tgtcacactc ccacccatat tcctcccaaa 961 gaaatacaac gcgcggtacc cgataaagaa aactgtggcg cagcagctat ttctttacat 1021 caagtccgtg aaaacagtca cggagagaga catctgggcc aaagttagac agatcataaa 1081 gaccgctgag ctccaaagct actcggcaaa agagctcgca ctcattgtca actactactt 1141 gctcatctct aagctggact cggtcacatg ttttgacaat gtgctcacag ggggtgtgct 1201 caagaagctc tttaaaccca tcgtggcttg gtggtccacc ttcaaaggga agatcttcgg 1261 gaaggaggag ttcgaacaac ttatggaggc gcttgagtgg gtcgacgtgt cactgtccta 1321 caaagtggag acatacagcc aggccaaccc aaacaatcag cccaaggtga tgttcgggta 1381 cgagtggctc agcacagaaa cgggaacccc aggaacagag gaggacgccg ctcccgaaac 1441 cccacaagag gacgaggacc cacatgaaag atatatccag gccctccaaa cactgacgaa 1501 ggccctcgac caggagagtg ctccaccacc aacagaacca gcccagtgct ccagcaccag 1561 taatccacaa caggaggagc acttccgccc accccacaac ctccacactg atgaaacccc 1621 aagctgctca ggaagctcga attcctttgc ttgccactgc ccgtgcggca cggaactcaa 1681 agttttctca gccgagtttc cacccattcc cccactatcg cacggcgatc ggctcaagaa 1741 cagggaagca ttcttctttt cgagagatgg tactccctac agctacactg ggggttccca 1801 cgcatccaga ggatggccga ctttccttga ccagatcctg gccactgctg agttggtgag 1861 gcccctcccc cacttcaacc aatgcctcat ccaaaaatac caaagaggcg cctccatccc 1921 cttccacaga gacgacgagc catgctacga tgcggaccac caagtgctca caatcaacct 1981 caccggtgaa gcagaattca aaatcagctg caaagctggt tcagggagtt gcacgttagt 2041 agagaaccag ttccacctgt ccccccccgg tttccaaaag acacacaagc acagtgtggt 2101 ctcacttagc gcggggcgag tctccctcac attccgctcc actgtcaagc agagcgttac 2161 ctctgaagag ggtgactgtg tagaacccga caatctgccg tggaaggcct ggctcggaaa 2221 gctgagaaac ctgggcttca ggggcatgca gctgcaatac gatccaaatg gggccttgat 2281 ctcaccaatc gaaagcgtca agtcactccc gaagtgctcc ccggaaaagg tcgacccctc 2341 cctcctcaaa atgctagata atcaggctcg cgcaccaact ccattctcgc ccagccccat 2401 cagggcaaaa gcttactcct cagacgtcaa aaactctcga attggcgcat tactccgaca 2461 gcagggcaaa gattggggcc accgcttcga ttcacttgtg gagaatgggc agaggcagct 2521 agccatcagt gtgatccatg gggccggtgg ctctgggaaa tcgagggcgt tgcagatgta 2581 cctgaaggac aacccagatg ctgatgtcac gatagtgcta ccaactaacg agctgaggct 2641 cgactggctg aagaagttgc ccaccttccc ggcagaccag atcaaaacct tcgagaaggc 2701 cctgctggct cccacaaagc ccacagttat cttcgatgac tacggcaaac tgccagccgg 2761 gtacattgaa tccttctcat tctacatgtc atcagctgag cttctggtgc tcaccggtga 2821 ctccaagcag agcgtgcatc acgagtctaa tgagaatgcg atgagcagcc tcatcgaacc 2881 cttcactctg gaagctgata agtactcacg ctattacatc aatgccacac acagaaacaa 2941 gcgtgatttg gccaacaagc taggggtcta ctcagaggtc acggggataa catccatcac 3001 ccaaggcaac caccctgtgc cgggacttca cctgctcgtc ccctcactct acaagaagga 3061 ggctttcagc gaaatgggtc acaaggtttc cacttatgcg ggctgtcagg gcctcacagc 3121 cccacgcgtg caaattctgc tctcagaaga gactagcatg tgttcccgcg aagtcattta 3181 caccgccctc tcccgagccg ttcactccat tcactttgtc aactgcggcc caaacaatca 3241 ggctttctgg gccaagctgg agagcacacc ttacctgaaa gctttcctct ccacgctccg 3301 agaagacgcg gcacctgtcg tgaaaccgaa agaggaagca ccagctccag ttgatccccc 3361 aaagacccac atcccagttg actcagccat gccaatttat gaggacttac tggatcagat 3421 gcgggaaaag catgagaggg agatcttttc agaaaagcat gggcacagca attgcgtgca 3481 aacggaggat acctttgtgc aaatgttcag tcaccagcag gctaaggacg aaacccttct 3541 ctgggctacc atcgaggcga gactggtcat ttccaacccc aaggccaatt ggcaagaatt 3601 catggagaaa agaccgattg gagatgtgct ctttggtttc tacagagaag cgatggggct 3661 gcccactgaa cctattgcct ttgaaccaca gctttgggag tcttgcatcc atgaggtcca 3721 gcgtacctac ttggcaaagc ccatcaacat gctgaagaat ggacaggctc ggcaatcccc 3781 cgattatgat ccaaacatga tatctctctt tctgaagtcc cagtgggtga agaaaatgga 3841 gaagttgggc gccctaagga tcaagcccgg acaaactatt gcctccttcc accaggccac 3901 tgtcatgctg ttcggcacga tggctaggta catgaggaga atgcgggaaa tcttccagcc 3961 taagaacatt gccatcaact gcgagatgac cccagaagat ctcacagatt gggccgtggg 4021 ttctgccggc cagtggaaat tcgccggccc ttctttagcc aatgacttca cagcattcga 4081 tcagtcacaa gatggggcga tgcttcagtt tgaggtcctc aaagccaaac accacagcat 4141 tccagaggat gtcttggacg cttacctaca catcaaaaca aactcgaaga tcttcttggg 4201 tacattgacc attatgagac tcacgggtga gggccccact ttcgatgcaa acactgagtg 4261 caacatcgct ttcacccatg caaaatttca gattccaaag ggtacagccc agctttacgc 4321 gggggatgac tcggcaattg atggcaaccc cccagtgaga gagagcttca gattggttga 4381 gcagaaattg aagctgaggt caaaaccggc gatcgcgatg caggaaaaag gagactgggc 4441 agaattctgt ggatacagga ttacgcccaa aggtttcatc aaggatccaa agaaacttca 4501 cgcgagtctg gtgcttgaaa agaagagagg taatttgaag aatgtgctga ggtcctatga 4561 gcttgacctg gcattggcat atcagcaccg ggatgaactt cacgaattac tctctgagga 4621 ggagctgcgt cttcactacg acacggttcg tacgctagtt aagtcaggtg gaggagaggt 4681 tttgaaaact tttctttcca aagatgaatc actttactaa cctcctcatt gaagagggtt 4741 acgtccggac gaacgaaatc ctctcagata ctctagtcgt ccatgctgta gctggcgctg 4801 gcaagtccac cctcatccgc aaattcatcc atcagcatcc acaggcccgt gcgtacaccc 4861 acggagtccc tgacccccca aatctcgaag gccgattcat tcaggctttt aagaaccctg 4921 acccaaacca cttcaacatc cttgacgagt attgcgcaga acctccaagc ggcagttgga 4981 acgtgctcat cgccgacccc ctgcaacata gatctcaagc tcttcgaccc cactacatca 5041 aaagagagtc ccacaggcta ggagtagcca cgtgtgaact tctcaccaga gtggggcttc 5101 cagttttgtc caacaagact gaggatcaag tcgattacca gggcattttc gaagggcccc 5161 ttttcggcac cgtgattgct ctggactcca ctgtcagagc cctcctcgta aagcacggaa 5221 ttccaccact ctgccctgct gaggtcctcg ggtctgagtt tgagcaaacg acagtagtct 5281 cggaggttcc gcttagccag gtcaagttca agcacgctct gtacatcgct ctcacccgcc 5341 acaagaagtc tctccatgtc cgggctcccc cactccctga caccccccgc cgattactct 5401 aagccagtgc ttgcagcagc agtaggagtt agtttagctt tagtaataaa ctctttcttg 5461 gtctataggc ttccctcgcc cggggacaat attcatcaac tgccctttgg aggttcctac 5521 cgggacggaa ctaagagcat ccactacaat tcgcctaggg cccagagtca gatctcaggt 5581 gcgtcaccgt tcctgataat cctgatactc tcagccctca tctatgccct atcttgtaga 5641 ggcggccatc accgtgctcg cttgcatagg tgtccttgct gctcttaggc cagggtccca 5701 tccttgcacc attctgctaa ctggacactc tgcgaccatt agcggaaact gtggacctgt 5761 cgcaccagag accatcaggg ctcttggaga ctacttaacc gggcttaggt tttagcatta 5821 gtttgattat cctatcgtca tcctagttga agtcatcatg tctacaccat ttcctcaagt 5881 cactcaggaa cagatgaacg ccttcactcc acataccaca tccaatctcc ttccatcacc 5941 ggagcagttg accaccattg ccaacctctt ggttgctgcc aaggtgcctg ccgcctcaac 6001 cacgaccatt gccctggagc ttgttaactt ctgttatgac aatggctcca gtacttacac 6061 agcggtggtg ggcccttctt cacttgcaga ggtctcactc tcccaggtcg ctaacatcgt 6121 caaagcctca ggcacctctc tccgcaaatt ctgcagattc tttgctccaa tcatctggaa 6181 cctcagaaca gacaagacgc ccccagccaa ctgggaagcc aatgggttca aaccgacaga 6241 gaagtttgca gccttcgatt tcttcgatgg agtggaaaat ccggcggcca tgcagccacc 6301 aggagggttg gttaggactc ccagccaagc agaaaggatc gccaacgcca ctaacaagca 6361 ggtaaacctc tttcaggccg cggcacagga taataacttc gccagcaact ctgcattcat 6421 caccaagggc caattgtcct ccaactcacc aaccattcaa tacctcccac cacctgagtg 6481 atttctccac ccagttcaag cccgttgttt tcgcaatttt gttggggcta tcgagttttc 6541 aaaattgctt ccgcttctgt agacctaaat tacagcctag tgtgcggttt aatacctatt 6601 tacgcac //