LOCUS GQ179647 6607 bp RNA linear VRL 24-DEC-2009 DEFINITION Alternanthera mosaic virus isolate SP 4-7, complete genome. ACCESSION GQ179647 VERSION GQ179647.1 KEYWORDS . SOURCE Alternanthera mosaic virus (AltMV) ORGANISM Alternanthera mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Alphaflexiviridae; Potexvirus. REFERENCE 1 (bases 1 to 6607) AUTHORS Lim,H.S., Vaira,A.M., Reinsel,M.D., Bae,H., Bailey,B.A., Domier,L.L. and Hammond,J. TITLE Pathogenicity of Alternanthera mosaic virus is affected by determinants in RNA-dependent RNA polymerase and by reduced efficacy of silencing suppression in a movement-competent TGB1 JOURNAL J. Gen. Virol. 91 (PT 1), 277-287 (2010) PUBMED 20019006 REFERENCE 2 (bases 1 to 6607) AUTHORS Hammond,J., Lim,H.-S. and Reinsel,M.D. TITLE Direct Submission JOURNAL Submitted (19-MAY-2009) Floral and Nursery Plants Research Unit, National Arboretum, US Department of Agriculture, 10300 Baltimore Avenue, Building 010A, Beltsville, MD 20705, USA FEATURES Location/Qualifiers source 1..6607 /mol_type="genomic RNA" /country="USA: Maryland" /lab_host="Nicotiana benthamiana" /collection_date="2007" /host="Phlox stolonifera cv. Sherwood Purple" /db_xref="taxon:85454" /isolate="SP 4-7" /organism="Alternanthera mosaic virus" 5'UTR 1..94 CDS 95..4720 /codon_start=1 /protein_id="ACS28233.1" /translation="MAHFRSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQD PAAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKL QYFHRGPQHGDLFLNAWIEPKDVTRYNLEDLFKPSITPEIQTRVAFIGDTLHFLPLGA IREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYC HEYSQLQWLKVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVE TKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQ SYSAKELALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGALFGKEE FEQLMEALEWVDVSLSYKVETYSQANPNNQPKVMFGYEWLSTETGAPGTEEDVAPENP QEDEDPHEKYIQALQTLTKALDPENAPPQTEPAQSSSINDPQQEEHPRSPHDLHTDES PSCSGSLNSYACHCPCGIELKIFSAEFPPIPPLSHGDRLKNREAFFFSRDGTPYSYTG GSHVSRGWPAFLDQILATAELVRPIPHFNQCLIQKYQRGASIPFHSDDEPCYDVDHQV LTINLTGEAEFKTSCKAGSGSCTLAENQFHLSPPGFQKTHKHSVVSLSAGRVSLTFRS TVKQGVTSEEGDYVEPDNLPWKAWLEKLRNLGFRGTQLQYDPNGALISPIESIKSLPK CSPEKVNPSLLKMLNDQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRF DSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLP TFPADQIKTFEKALLAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSV HHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGN HPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYT ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDP PKTHIPVDSAMPIYEDLLDQMPEKHEREIFSERHGHSNCVQTEDTFVQMFSHQQAKDE TLLWATIEARLVISNPKANWQEFMEKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESC IHEVQRTYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTI ASFHQATVMLFGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPS LANDFTAFDQSQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTG EGPTFDANTECNIAFTHAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRS KPAIAMQEKGDWAEFCGYRITPKGFIKDPKKLHASLVLEKKRGNLKNVLRSYELDLAL AYQHRDELHELLSEEELRLHYDTVRTLVKSGGGEVLKTFLPKDESLY" /product="replicase" CDS 4704..5402 /codon_start=1 /protein_id="ACS28234.1" /translation="MNHFTNLLIEEGYVRTNEILSDTLVVHAVAGAGKSTLIRKFIHQ HPQARAYTHGVPDPPNLEGRFIQAFKNPDPNHFNILDEYCAEPLSGSWNVLIADPLQH RSQALRPHYIKRESHRLGVATCELLTRVGLPVLSNKTEDQVDYQGIFEGPLFGTVIAL DSTVRALLVKHGIPPLCPAEVLGSEFEQTTVVSEVPLSQVKFKHALYIALTRHKKSLH VRAPPLPDTPRRLL" /product="TGB1" CDS 5356..5688 /codon_start=1 /protein_id="ACS28235.1" /translation="MSGLPHSLTPPADYSKPVLAAAVGVSLALVINSFLVYRLPSPGD NIHQLPFGGSYRDGTKSIHYNSPRAQSQISGASPFLIILILSALIYALSCRGGHHRAR LHRCPCCS" /product="TGB2" CDS 5624..5815 /codon_start=1 /protein_id="ACS28236.1" /translation="MPYLVEAAITVLACIGVLAALRPGSHPCTILLTGHSATISGNCG PVAPETIRALGDYLTGLRF" /product="TGB3" CDS 5858..6481 /codon_start=1 /protein_id="ACS28237.1" /translation="MSTPFPQVTQEQMNAFTPHTTSNLLPSPEQLTTIANLLVAAKVP AASTTTIALELVNFCYDNGSSTYTAVVGPSSLAEVSLSQVANIVKASGTSLRKFCRFF APIIWNLRTDKTPPANWEANGFKPTEKFAAFDFFDGVENPAAMQPPGGLVRTPSQAER IANATNKQVNLFQAAAQDNNFASNSAFITKGQLSSNSPTIQYLPPPE" /product="coat protein" 3'UTR 6482..6607 ORIGIN 1 gaaaagtaaa gcaaagcaaa gcaaagcaaa gaaactgaaa gtctatattt gcccttcgag 61 gagatcgatt acccatcccg gctagatcaa cagtatggca cactttcgtt ctgttcttga 121 ccaaatgaac gatcccagcc tccgggcggt cattcaagaa gaagcttacc gcgaaattaa 181 aaaaaccatc gcggaaacca aacagtacaa tccttacgcc caggatccag cggcggctga 241 ctcattagag aaattaggaa tagaatctaa ccccttctca gtccgcgccc atacacacgc 301 ggccgcgaag tctatagaat tagacatgta caaaatcacg ggttactccc tcccaaagga 361 gaatccaatt acttttcttt tcatgaagag gtccaaactt caatacttcc acagaggacc 421 acagcatgga gacttgttcc ttaacgcttg gattgagcca aaggacgtca ccaggtacaa 481 cttagaagac ctcttcaaac cttccatcac cccagaaatc caaactagag tggcattcat 541 tggagacaca ctacacttcc ttcccctagg ggctatcaga gagatattta caagctccca 601 aaaacttcaa actctctatg caacaatggt actgcccccc gaagccatgc acagaatgca 661 ctcaattcac cccagcattt acgagctaga attccatgaa agaaatttca tatacaagcc 721 gggaggacat gcaggggcgt cctattgcca cgagtactca caacttcagt ggctcaaggt 781 cgggaaattc gagtggtgcg acaaaagata tcagaagcac tacgtgacat cacagattct 841 ggaaaccaag ggtgcaaatc accttttcgt attccagcgc ggcaatttcg ccacccctac 901 ctaccgaact ttcggggtag agacaaaatt tgtcacactc ccacccatat tcctcccaaa 961 gaaatacaac gcgcggtacc caataaagaa aactgtggca cagcaactat ttctctacat 1021 caagtcggtg aaaacagtca cggagagaga catttgggcc aaagtgagac agatcataaa 1081 gaccgctgag ctccaaagct actcggcgaa agaactcgca ctcattgtca actactactt 1141 gctcatctcc aagctggact ctgtcacctg ttttgacaat gtgcttacag ggggtgcgct 1201 caagaagctc ttcaaaccca ttgtggcttg gtggtccacc ttcaaaggcg cgcttttcgg 1261 gaaagaggag ttcgaacaac ttatggaagc gctcgagtgg gttgacgtgt cactgtccta 1321 caaagtggag acatacagcc aagctaaccc aaacaatcaa cccaaggtga tgttcgggta 1381 tgagtggctc agcacagaaa cgggagctcc aggaacagag gaggacgtcg cccccgagaa 1441 tccacaagag gacgaggatc cacatgaaaa gtacatccag gccctccaaa cactaacgaa 1501 ggccctcgat ccagagaacg ccccaccaca aacagaacca gctcaaagct ccagcatcaa 1561 tgatccacaa caggaggagc atccccgctc accccacgac ctccacactg atgaatcccc 1621 aagctgctca ggaagcttga attcttatgc ttgccactgc ccatgcggca ttgagctaaa 1681 aattttttca gccgagtttc cacccattcc cccactatcg cacggtgatc ggctaaaaaa 1741 tagggaagcc ttcttcttct caagagatgg cactccctac agctacactg ggggttccca 1801 cgtatccaga ggatggccgg ctttcctcga ccagatccta gccactgctg agttggtgag 1861 gcctatcccc catttcaacc agtgcctcat ccaaaaatac caaaggggcg cctccatccc 1921 cttccacagc gacgatgagc catgctacga tgtggaccac caagtgctca caatcaacct 1981 cactggcgaa gcggaattca aaactagctg caaagccggt tcagggagtt gcacgctggc 2041 agagaaccag tttcacctgt cccccccagg tttccaaaag acgcataagc acagtgtggt 2101 ctcactcagc gcggggcgag tctccctcac atttcgctct accgtcaagc agggtgttac 2161 ctctgaagag ggcgattatg tagagcccga caatctgcca tggaaggcct ggctcgagaa 2221 attgagaaac ctgggattca ggggcacaca gctgcaatat gatccaaatg gagccttgat 2281 ctcaccaatc gaaagcatca agtcacttcc gaagtgctcc ccggaaaagg tcaacccctc 2341 cctcctcaag atgctgaatg atcaggctcg tgcaccaact ccattctcgc cgagccccat 2401 cagagcaaaa gcctactcct cagacgttaa gaactcccga attggcgcat tactccgaca 2461 gcagggcaag gactggggcc accgtttcga ttcactcgtg gagaatgggc agagacagct 2521 agccatcagc gtgatccatg gggctggcgg ctctgggaaa tcgagggcgt tgcaaatgta 2581 cttaaaagac aatccagatg ctgatgtcac gatagtgttg ccaactaacg agcttaggct 2641 cgactggttg aagaaattac ccaccttccc agctgaccag atcaaaacct tcgagaaggc 2701 cttgctggcc cccataaaac ccacagtcat cttcgatgat tacggcaaac tgccggccgg 2761 gtacattgaa gccttctcgt gctacatgtc atcggttgaa cttctggtgc tcaccggtga 2821 ttctaagcaa agtgtgcacc atgagtctaa cgagaatgcg atgagcagcc tcattgaacc 2881 cttcaccctg gaagctgaca agtactcacg ctactatatt aatgccacac acagaaacaa 2941 gcgtgatttg gctaacaaac taggggtcta ctcggaggtc acgggaataa catccatcac 3001 ccaaggcaac caccctgtgc cgggacttca cctgctcgtc ccctcactct acaagaagga 3061 agctttcagc gagatgggcc acaaggtttc cacttatgcg ggctgtcagg gtctcacagc 3121 cccacgcgtg caaattctgc tctcagaaga gactagcatg tgttcccgcg aagtcattta 3181 caccgccctc tcccgagccg ttcactccat tcactttgtc aactgcggcc caaacaatca 3241 ggctttctgg gccaagctgg agagcacacc ttacctgaaa gctttcctct ccacgctccg 3301 agaagacgcg gcacctgtcg tgaaaccgaa agaggaagca ccagctccag ttgatccccc 3361 aaagacccac atcccagttg actcagccat gccaatttat gaggacttac tggatcagat 3421 gccggaaaag catgagaggg agatcttttc agaaaggcat gggcacagca attgcgtgca 3481 aacggaggat acctttgtgc aaatgttcag tcaccagcag gctaaggacg aaacccttct 3541 ctgggctacc atcgaggcga gactggtcat ttccaacccc aaggccaatt ggcaagaatt 3601 catggagaaa agaccgattg gagatgtgct ctttggtttc tacagagaag cgatggggct 3661 gcccactgaa cctattgcct ttgaaccaca gctttgggag tcttgcatcc atgaggtcca 3721 gcgtacctac ttggcaaagc ccatcaacat gctgaagaat ggacaggctc ggcaatcccc 3781 cgattatgat ccaaacatga tatctctctt tctgaagtcc cagtgggtga agaaaatgga 3841 gaagttgggc gccctaaaga tcaagcccgg acaaactatt gcctccttcc accaggccac 3901 tgtcatgctg ttcggcacga tggctaggta catgaggaga atgcgggaaa ttttccagcc 3961 taagaacatt gccatcaact gcgagatgac cccagaagat ctcacagatt gggccgtggg 4021 ttctgccggc cagtggaaat tcgccggccc ttctttagcc aatgacttca cagcattcga 4081 tcagtcacaa gatggggcga tgcttcagtt tgaggtcctc aaagccaaac accacagcat 4141 tccagaggat gtcttggacg cttacctaca catcaaaaca aactcgaaga tcttcttggg 4201 tacattgacc attatgagac tcacgggtga aggccccact ttcgatgcaa acactgagtg 4261 caacatcgct ttcacccatg caaaatttca gattccaaag ggtacagccc agctttacgc 4321 gggggatgac tcggcaattg atggcaaccc cccagtgaga gagagtttca gattggttga 4381 gcagaaattg aagctgaggt caaaaccggc gatcgcgatg caggaaaaag gagactgggc 4441 agaattctgt ggatacagga ttacgcccaa aggtttcatc aaggatccaa agaaacttca 4501 cgcgagtctg gtgcttgaaa agaagagagg taatttgaag aatgtgctga ggtcctatga 4561 gcttgacctg gccttggcat atcagcaccg ggatgaactt cacgaattac tctctgagga 4621 ggagctgcgt cttcactacg acacggttcg tacgctagtt aagtcaggtg gaggagaggt 4681 tttgaaaact tttcttccca aagatgaatc actttactaa cctcctcatt gaagagggtt 4741 acgtccggac gaacgaaatc ctctcagata ctctagtcgt ccatgctgta gctggcgctg 4801 gcaagtccac cctcatccgc aaattcatcc atcagcatcc acaggcccgc gcgtacaccc 4861 acggagtccc tgacccccca aatcttgaag gccgattcat tcaggctttt aagaaccctg 4921 acccaaacca cttcaacatc cttgacgagt attgtgcaga acctctaagc ggcagttgga 4981 acgtgctcat cgccgacccc ctgcaacata gatctcaagc tcttcgaccc cactacatca 5041 aaagagagtc ccacaggcta ggagtagcca cgtgtgaact tctcaccaga gtggggctcc 5101 cagttttgtc caacaagact gaggatcaag ttgattacca gggcattttc gaagggcccc 5161 ttttcggcac cgtgattgct ctggactcca ctgtcagagc cctcctcgta aagcacggaa 5221 ttccaccact ctgcccagct gaggtcctcg ggtctgagtt tgagcaaacg acagtagtct 5281 cggaggttcc gcttagccag gtcaagttca agcacgctct gtacatcgct ctcacccgcc 5341 acaagaagtc tctccatgtc cgggctcccc cactccctga caccccccgc cgattactct 5401 aagccagtgc ttgcagcagc agtaggagtt agtttagctt tagtaataaa ctctttcttg 5461 gtctataggc ttccctcgcc cggggacaat attcatcaac tgccctttgg aggttcctac 5521 cgggacggaa ctaagagcat ccactacaat tcgcctaggg cccagagtca gatctcaggt 5581 gcgtcaccgt tcctgataat cctgatactc tcagccctca tctatgccct atcttgtaga 5641 ggcggccatc accgtgctcg cttgcatagg tgtccttgct gctcttaggc cagggtccca 5701 tccttgcacc attctgctaa ctggacactc tgcgaccatt agcggaaact gcggacctgt 5761 cgcaccagag accatcaggg ctcttggaga ctacttaacc gggcttaggt tttagcatta 5821 gtttgattat cctattgtca tcctagttga agtcatcatg tctacaccat ttcctcaagt 5881 cactcaggaa cagatgaacg ccttcactcc acataccaca tccaatctcc ttccatcacc 5941 ggagcagttg accaccattg ccaacctctt ggttgctgcc aaggtgcctg ccgcctcaac 6001 cacgaccatc gccctggagc ttgttaactt ctgttatgac aatggctcca gtacctacac 6061 agcggtggtg ggcccttctt cacttgcaga ggtctcactc tcccaggtcg ctaacatcgt 6121 caaagcctca ggcacctctc tccgcaaatt ctgcagattc tttgctccaa tcatctggaa 6181 cctcagaaca gacaagacgc ccccagccaa ctgggaagcc aatgggttca aaccgacaga 6241 gaagtttgca gccttcgatt tcttcgatgg agtggagaat ccggcggcca tgcagccacc 6301 aggagggttg gttaggactc ccagccaagc agaaaggatc gccaacgcta ctaacaagca 6361 ggtaaacctc tttcaggccg cggcacagga taataacttc gccagcaact ctgcattcat 6421 caccaagggc caattgtcct ccaactcacc aaccattcaa tacctcccac cacctgagtg 6481 atttctccac ccagtccaag cccgttgttt tcgcaatttt gttggggcta tcgagttttc 6541 aaaattgctt ccgcttctgt agacctaaat tacagcctag tgtgcggttt aatacctatt 6601 tacgcac //