LOCUS AY924389 7046 bp RNA linear VRL 06-NOV-2007 DEFINITION Amapari virus strain BeAn 70563 Z protein and RNA-dependent RNA polymerase genes, complete cds. ACCESSION AY924389 VERSION AY924389.1 KEYWORDS . SOURCE Amapar mammarenavirus ORGANISM Amapar mammarenavirus Viruses; ssRNA viruses; ssRNA negative-strand viruses; Arenaviridae; Mammarenavirus. REFERENCE 1 (bases 1 to 7046) AUTHORS Cajimat,M.N., Milazzo,M.L., Hess,B.D., Rood,M.P. and Fulhorst,C.F. TITLE Principal host relationships and evolutionary history of the North American arenaviruses JOURNAL Virology 367 (2), 235-243 (2007) PUBMED 17624390 REFERENCE 2 (bases 1 to 7046) AUTHORS Cajimat,M.N.B. and Fulhorst,C.F. TITLE Direct Submission JOURNAL Submitted (08-FEB-2005) Pathology, University of Texas Medical Branch, 301 University Blvd., Galveston, TX 77555-0609, USA FEATURES Location/Qualifiers source 1..7046 /mol_type="genomic RNA" /db_xref="taxon:45218" /country="Brazil" /strain="BeAn 70563" /segment="L" /organism="Amapar mammarenavirus" misc_feature 1..56 /note="5' non-coding region" primer_bind 1..19 CDS 57..344 /codon_start=1 /protein_id="AAX99341.1" /translation="MGNCNVKQETQPQSTRPKTTSTETELLRTPPVSLHGRYNCKCCW FADKNLVVCSDHYLCLRCLNLMFRTSDLCNICWKPLPTRIATPVEPSAPPE" /product="Z protein" /note="zinc-binding protein" misc_feature 345..434 /note="intergenic region; IR" CDS complement(435..7016) /codon_start=1 /protein_id="AAX99342.1" /translation="MDEKINSLKDFVRKQVPEIPELSYQRELLLSQVEMGMILMEGFK LLSCLVEIESCKKNSCEHNSSQKFVDVILSDNGVVTPTLPKVIPDGFRFFNKTLILLE TFVRVNPEEFEKKWKRDMSKLLTLKEDVQKAGITLVPIVDGRCNYNTNLMPDWATERF RWLLIDLLRESRGDSKIDIEEQEYQRLVHSLSKTGNQSLGFENIECLKRHCLNYESRL DESLLTGFNNDLRESKIREGLIKMKNWYRKEVFVKGMGNFVKTDKAKLLQSLENLGLH ANSGTSKCPFCCCKILDICYKLMQKLKRGHSLSEGIPDEFIAKSQIEKEYLLVLSVCN KIKGKKVFNTRRNTLLFLDLIMLNFVIDVFENNPTELCFLKESGLIIGQMLLFSNDRV LDILSARKLLKKKLEISAHWVKKCNSILKRAEPDLWDYVSKYITEPKFDSLTSLAEEL CTERPVMRYKVQIHSGDGCSHKEFETLSEQQQICLFKCLSHVSLSLTNSMKTSFSSRL LVNEVDHKNYFGTVRLKECYVQKFFLTNELYGLLFYQKTGERSRCYSLYLSDKGQLEE VGSFYCDPKRFFLPIFSDTVLLLMCAEMVSWLDFCEELAREVDPLLRLLVLSILCSPS KRNQTFLQGLRYFIMAFVNQAHHVQLMSKLVVECKSASDVLIQRLSVRMFRMVLDFGS DPDAFMSRKFKFLLNVSYLCHLVTKETPDRLTDQIKCFEKFLEPKLEFGFFVVNPSLN GTLTKEQEDAMVGGVSKFFSKDIFNIEDMKQPGVSRDLLSYCLTLFNKGKLKVNGSLK VNPFRPSFTSTALDLSSNKSVVIPKLDELGNIVSVYDKQKLVSTCVASLVERFKTKGK FNLDPNEIEFLIMDNLTNLLAIKGSAVKEREELSMLYEQLSDDAIKAFEELRQDVEFT LGRMRTPEKKKKTTNFYGNCTLESLWAPFNVMKAIRTETSIHEIRDFDPNILPPEIYE ELCTSVFESSLKESFFLNEVLDICPLELLLKNLTTRCFEEQEFFDCFKYLLIQAGFDQ RLGTYEHKSKSRLGLSEDVFKLRDDVRMSQRESNSEAIARRLDKSFFTSAALRNLCFY SEESPTEYTCISPNTGNLKFGLSYKEQVGSNRELYVGDLNTKMMTRLVEDFAEAVAKS MNYTCLNSEKEFEKAICDMKMAVNAGDICCSLDHSKWGPFMSPALFLSFINELKLKDH ETSALIDCRPVLSVLRWHLHKAVEVPFNVAEAYCTGMLKRRLGLMSLQSQSVSEEFFH QQLLMGKEVPSHIMSVLDMGQGILHNLSDLYGLITEQFLNYCLDLLFDVVPISYTSSD DQITMIKFPTTNAPEGGESQSDWLEVLCFHDFLSSKLNKFVSPKSVCGSFAAEFKSRF FVMGEETPLLTKFVSAALHNVKCKTPTQLAETIDTICDQCVANGVGVTIVGEISKRVN RLIKYSGYPQTPFLAVEVQDVKDWVDGSRGYRLQRNVENCLSDHPQLELIRKSAKKVL TKIKRGLIFEEHLVQLIGKGGDNAMEAFLSYIDCSEIEKREALRYRWLNLSSNGDLRL VLRTKLMSARRVLEKEQIPTLIKTLQSKLSKNFSRGAKKILAESINKSAFQSSVASGF IGFCKSMGSKCVRDGSGGFLYIKDVISKVKICSCDICSLAPGIVFCDEALENVSMFSR PILWDYFSLVLTNACELGEWVFSCVQIPPKPTLLSNPNLFWAVKPRGVRLVEDQLGLN HVLQSVKRNYPKIFEEHLVPFMSDLQVSRTTDFTKLKYLDVCIALDMMNENLGIISHL LKGRDNSLYIVKQNECASAHVRQVEYVDYDVGLSPQQICSNFKIQLTFSTFINPLVMT TSTLRSFFWFGEVLRLEDENQIDVGELTDFVLLIKKYNVDRAMMLDDLTMGFVVSEIG EPKFRLLDFEWSGVEEQTSFPLSENSNNNEIKFTLNLQLEHKRLSTKYRLTRLVVYSY TMVCVMLVNDSRGVLKVENLTLRASGDVKEHRFLDGVTLVSHHPTLCGKRGINILDLF RDAELPIPETRMFPEEVFLDLSDYQSEVEDKYAYEIVGPEFSDVPLVMSGGCLVVGDK KLSHLLTELTGNVILKALGALETDGEIGSFLMGLWPYIKATKQRVKISQEEFLFIYET HRRSLLMSFEAYNDWLEFLDFSVCFSKTLGDLVVSDSSGNMRLRGVVCRPLRQVGTVM EIE" /product="RNA-dependent RNA polymerase" /note="RdRp" misc_feature 7017..7046 /note="3' non-coding region" primer_bind complement(7028..7046) ORIGIN 1 cgcaccgtgg atcctaggcg taactttcac gcttattgct ctgttacagt tccgacatgg 61 gcaattgtaa tgtcaagcaa gaaacccaac cccagtcaac aagacccaaa acaacttcaa 121 ctgagacaga acttctcaga actcctccag tcagcctcca cggtagatac aactgcaaat 181 gttgttggtt tgctgataaa aaccttgtgg tgtgctcaga tcactatctc tgtctgagat 241 gcttgaactt gatgttcaga acctctgatc tgtgcaacat ctgctggaaa cctctaccca 301 ctcgcatagc gactccagtc gagcccagcg caccaccgga atgaggcagc agacaaacca 361 caccggcaaa aaccccgggg gccccgcaag gggcccccac cggggaaccc cggggggcgt 421 tgatcctgtc tggtctactc tatctccatc actgtgccga cttgacgcag aggtctacaa 481 acaactcctc ttaacctcat attgccagaa ctgtccgaca caaccagatc acctaaggtc 541 ttgctgaaac acacactaaa atctaaaaat tctaaccagt cattatatgc ttcaaaagac 601 ataagaagtg aacgtctatg tgtctcatat ataaaaagaa attcttcttg agatattttc 661 accctttgtt ttgtggcctt tatgtagggc cacaatccca tcaaaaaact tccaatctct 721 ccatctgtct ccagggcacc caatgccttc aaaatgacgt ttcctgtcag ctcagtcaac 781 aggtgtgaca gttttttatc ccctacaaca agacatcctc cactcataac caatggcaca 841 tcagaaaatt cgggacccac gatttcatat gcatacttgt cttcaacttc tgattgataa 901 tcactgagat ccaaaaacac ttcttcagga aacattcttg tttcaggtat gggcaactca 961 gcatccctaa ataagtccag aatgtttatc ccccttttcc cacatagggt tggatgatga 1021 gagacaagcg ttaccccatc aagaaaccga tgctctttca catcaccaga ggccctcagc 1081 gtcaagtttt caactttcaa aacacctctg gaatcattaa ctaacattac gcagaccatt 1141 gtgtaggaat acacaacaag cctagtcaga cgatattttg ttgaaagcct tttgtgttcc 1201 agctgcaaat tcaatgtaaa ttttatttcg ttgttgtttg agttttcaga tagtggaaaa 1261 gaagtttgtt cctcgacacc agaccattca aaatctaaca aacggaattt tggctcacca 1321 atttctgaga caacaaaccc cattgttaga tcatctaaca tcatcgctct atccacattg 1381 tacttcttaa tcaataaaac aaagtctgtc aactcaccaa catctatttg gttctcatct 1441 tccaacctaa gaacctcccc aaaccaaaaa aaggatctta atgttgaagt tgtcatcaca 1501 agtgggttga taaaagtaga aaaggtcaac tgaattttaa aatttgaaca gatctgttga 1561 ggactcaaac ctacatcata gtcaacatat tcaacttgcc ttacatgcgc agatgcacac 1621 tcattttgtt tcactatgta caatgaattg tctctccctt tcaataaatg agaaattata 1681 ccaagattct cgttcatcat atcaagagct atgcaaacat ctaggtattt taattttgtg 1741 aaatcagtag ttcgactcac ctgcaaatca ctcatgaacg gtaccaaatg ctcctcaaat 1801 attttagggt aatttctctt tacagattgt agaacatggt ttaatcctaa ctgatcttca 1861 accagacgca cacctcttgg cttcactgcc caaaaaagat tgggattgct taatagagtt 1921 ggtttaggtg gtatttgaac acaagaaaag acccactcac caagttcaca agcattcgtc 1981 aaaaccaaag aaaaataatc ccaaagtatt ggtcttgaga acattgagac attctctagt 2041 gcttcatcac agaaaacaat gcctggagcc aaagaacata tgtcacatga acaaattttc 2101 accttactga tcacatcttt gatgtataaa aacccaccac tcccatctct gacacacttg 2161 ctccccatac tcttacaaaa gcctatgaac ccagaagcta cagacgattg aaaggctgac 2221 ttgtttatag attcagctaa tatctttttt gcacctcttg agaaattctt tgaaagcttt 2281 gattgtaatg tcttaattaa agttggtatt tgttcttttt ccagtaccct tcttgctgac 2341 attagcttgg ttcttaagac aagtcttaga tctccattgg aagacagatt caaccaacga 2401 taacgcaaag cctccctttt ttctatttcc gaacagtcta tgtaagagag gaaagcttcc 2461 attgcattgt caccaccttt tcctatcagc tgaactaaat gctcttcaaa tatgagcccc 2521 cttttgatct ttgttaaaac ctttttggca cttttcctta taagctctaa ctgaggatga 2581 tcagatagac agttctccac atttcgttgc aatctataac ctcttgaacc atccacccaa 2641 tctttcacat cctggacttc cacagctaaa aagggagtct gtggataacc agagtatttt 2701 attaacctat taaccctctt tgatatctca ccaacaatgg tgacccctac accattagca 2761 acacactgat cacaaattgt atcaattgtc tcggcaagct gagtaggtgt tttgcactta 2821 acattgtgga gtgctgctga gacaaatttt gtgagtaagg gggtttcttc acccataaca 2881 aaaaaccttg acttaaactc tgcagcaaaa ctcccacaaa cactcttggg acttacaaat 2941 ttgtttagct tggaggacaa gaagtcatga aaacaaagaa cttctaacca atcagattga 3001 ctctcccccc cctcaggtgc atttgtagtt gggaatttta tcattgttat ttgatcatca 3061 cttgatgtgt aagaaatggg caccacatca aaaagcaaat ctaaacaata attcaaaaac 3121 tgttctgtga tcagtccata aagatcagag aggttgtgaa gtattccctg ccccatgtct 3181 aacacagaca taatatgact tggcacttcc ttccccatta ataactgttg atggaaaaat 3241 tcctcagaca ctgattgaga ttgtaggctc atcaaaccta atctcctctt cagcatcccg 3301 gtgcaatacg cctctgccac attgaatggc acctcaacag ctttgtgcaa atgccacctc 3361 aaaacactta gaactggtct gcaatcaatc agagcacttg tttcatgatc cttcaatttt 3421 aattcattaa tgaaagaaag aaagagggct gggctcatga agggccccca ctttgagtga 3481 tctagtgagc agcaaatgtc cccagcatta acagccatct tcatgtcaca gatggccttc 3541 tcgaattctt tctcagagtt taaacaggtg tagttcatgg acttagcaac agcttcagca 3601 aaatcctcta caagtcttgt catcattttt gtattaaggt cacctacata aagctcccta 3661 ttagaaccaa cttgttcctt ataacttaaa ccaaacttca aattgccagt gttcggacta 3721 atacaagtgt attctgtagg ggattcttct gaatagaagc atagattcct taaagctgca 3781 ctggtgaaga agcttttatc aagcctcctt gcgatggctt cagagttact ctccctttga 3841 ctcattctaa catcatctct cagcttaaac acatcttcag ataaccctaa cctagactta 3901 ctcttgtgct catatgtacc taatctctga tcaaacccag cttgaattaa taaatactta 3961 aagcaatcga aaaactcctg ttcttcgaaa catcttgttg tcaagttctt caataaaagt 4021 tcgagtgggc aaatatcaag aacctcattt agaaagaaag attcctttag tgacgattca 4081 aaaacagatg tgcataattc ttcataaatt tcaggtggca aaatattggg atcaaagtct 4141 ctgatttcat gaatgctagt ctcagttcta atcgccttca tgacattaaa gggagcccaa 4201 agggactcca atgtacaatt gccataaaag tttgttgtct tcttcttttt ttctggagtt 4261 ctcattctcc caagagtaaa ttctacatct tgtcttaact cttcaaaagc ctttatggca 4321 tcgtcggata gctgctcata taacatagac aactcttctc tctctttcac agcagaaccc 4381 ttaatagcca gcaaatttgt cagattatcc atgattaaaa actcaatctc attcgggtcc 4441 agattgaatt tgccttttgt tttaaatctc tcaactaatg atgccacaca agttgaaacc 4501 agcttttgct tgtcataaac agaaacaatg tttccaagct catctagctt tggtatcaca 4561 acacttttat tactggacaa gtctaatgct gtgcttgtaa aacttggtct aaatggattc 4621 accttcaaac taccgttaac ttttagctta cctttgttaa acagtgtcaa acaataactc 4681 agcaagtctc tagaaacccc tggctgtttc atatcttcta tattgaagat gtccttagaa 4741 aagaatttgc taacgccacc caccatggca tcttcttgtt ccttcgtcaa tgtgccattg 4801 agagagggat tcacaacaaa gaaaccgaat tctaatttgg gttccaaaaa cttttcgaaa 4861 cattttatct gatcagttaa cctatcagga gtttcctttg tcactagatg acaaaggtag 4921 cttacattga gtaggaattt aaactttctt gacataaacg catcaggatc cgaaccaaaa 4981 tctaaaacca ttcggaacat cctcacgctt agcctctgta ttaatacatc tgatgcagat 5041 ttacattcta ctactagttt agacatcaat tgaacatggt gagcttggtt tacaaaggcc 5101 ataatgaagt accttagtcc ttgtaggaaa gtttgattcc ttttagaagg ggagcaaaga 5161 atgctaagca ccagtagtct taaaagaggg tccacttctc tagctaattc ctcacaaaaa 5221 tctagccagc tcaccatttc tgcacacatt aacaagagta ctgtatcaga aaagatgggg 5281 aggaagaatc gctttgggtc acagtaaaag gaaccaacct cttcgagttg ccctttatct 5341 gacaagtaca atgagtagca ccttgatctt tcacctgttt tttgataaaa caaaagtccg 5401 tacaactcat tggttaaaaa gaacttttga acataacatt ctttcaatct aacagtgccg 5461 aaataatttt tgtggtccac ctcattcact aacaatctgg atgaaaatga ggttttcatg 5521 gaattggtta atgacaaaga cacatgagaa agacatttaa aaagacaaat ctgctgttgc 5581 tctgataagg tttcaaattc cttgtgtgag cacccatctc ctgagtgaat ttgcaccttg 5641 tacctcatga ccggcctctc agtacataat tcttcagcta gtgaggtaag gctatcaaac 5701 ttaggttctg tgatatattt tgaaacataa tcccaaaggt ctggttccgc cctttttaaa 5761 attgagttac atttcttcac ccagtgggca ctaatttcca atttcttctt taaaagcttc 5821 ctggcagata agatatccaa cactctgtca tttgaaaaca gcaacatttg tccgatgatg 5881 agtcctgatt ccttcaagaa acacaactca gtaggattat tttcgaaaac atcaataaca 5941 aaattgagca taattaaatc taagaacaac agagtgtttc ttctagtatt aaagactttt 6001 tttcctttta ttttattgca cactgataga accaaaagat attccttttc aatctgtgat 6061 tttgcaatga actcatcagg aattccttca gataaagaat gaccacgctt taatttttgc 6121 atcaatttgt aacaaatatc aagtatttta caacagcaaa aaggacattt tgaagtccca 6181 gagttagcat gtaaacccag attttccaag ctttgcaata gctttgcctt gtcagttttg 6241 acaaaattac ccatcccctt aacaaaaacc tcctttctat accaattctt catttttatt 6301 aaaccttctc tgattttaga ttctcgaaga tcattattga aacctgtcaa taaactctca 6361 tccagtctac tttcataatt gagacaatgt ctcttgagac actcaatatt ttcaaatcct 6421 aaactctgat tcccagtttt ggacaaactg tgaaccaacc tctggtattc ctgttcctcg 6481 atgtcaatct ttgaatcacc ccttgattcc ctcaacaagt caataagcaa ccacctaaat 6541 ctttctgttg cccaatctgg catcagattg gtgttgtaat tgcatcttcc atccacaatt 6601 ggcactaaag tgatccctgc tttctgaaca tcttctttta atgttaacaa ttttgacata 6661 tcacgcttcc atttcttttc aaactcttca gggttaactc taacaaaggt ttcaagaaga 6721 atcaatgttt tattaaaaaa tctaaagcca tcaggaatta ccttaggcaa agttggagta 6781 actactccgt tgtcagatag gattacatca acaaacttct gacttgagtt gtgctcacag 6841 gaattcttct tacaggactc tatctcaact aaacaggaaa gtaacttaaa gccttccatt 6901 aaaatcatgc ccatctccac ctgagataac aaaagttctc tttgatagga aagttcaggt 6961 atttcaggaa cctgctttct cacaaagtct ttcaaagaat tgatcttttc atccatagtc 7021 aaaattcgcc taggatcctc ggtgcg //