LOCUS NC_006441 2002 bp RNA linear VRL 04-FEB-2011 DEFINITION Amasya cherry disease-associated mycovirus, complete genome. ACCESSION NC_006441 VERSION NC_006441.1 DBSOURCE BioProject accession PRJNA15010 KEYWORDS RefSeq; RdRp gene; RNA-dependent RNA polymerase. SOURCE Amasya cherry disease-associated mycovirus ORGANISM Amasya cherry disease-associated mycovirus Viruses; dsRNA viruses; Partitiviridae; unclassified Partitiviridae. REFERENCE 1 AUTHORS Coutts,R.H., Covelli,L., Di Serio,F., Citir,A., Acikgoz,S., Hernandez,C., Ragozzino,A. and Flores,R. TITLE Cherry chlorotic rusty spot and Amasya cherry diseases are associated with a complex pattern of mycoviral-like double-stranded RNAs. II. Characterization of a new species in the genus Partitivirus JOURNAL J. Gen. Virol. 85 (PT 11), 3399-3403 (2004) PUBMED 15483257 REFERENCE 2 (bases 1 to 2002) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-NOV-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2002) AUTHORS Coutts,R.H.A. TITLE Direct Submission JOURNAL Submitted (01-JUL-2004) Coutts R.H.A., Department of Biological Sciences, Imperial College London, Sir Alexander Fleming Building, Imperial College Road, SW7 2AZ, UNITED KINGDOM COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AJ781168. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2002 /mol_type="genomic RNA" /db_xref="taxon:284689" /country="Turkey" /isolation_source="found in symptomatic sweet and sour cherry trees affected by Amasya cherry disease" /organism="Amasya cherry disease-associated mycovirus" /host="putative fungus" gene 90..1955 /locus_tag="ACDAPVs1gp1" /db_xref="GeneID:3160795" /gene="RdRp" CDS 90..1955 /locus_tag="ACDAPVs1gp1" /function="polymerase" /protein_id="YP_138537.1" /gene="RdRp" /db_xref="GOA:Q65A75" /db_xref="InterPro:IPR001795" /db_xref="UniProtKB/TrEMBL:Q65A75" /db_xref="GeneID:3160795" /codon_start=1 /translation="MDHLTSLFELFAITPKTQNNLQFVGIYHRPPHSVRANLRNVEKH KITVAHAMHKYLYPHEIDFVINQMRRSDVTEDAILADFFDNNVEPLEPVLDEHFERGL SAMLDAFRPPQKCLPAHIYDVQHHYPYKWQVNAEAPFSTDSYFLANRPTFRAVFERLE SLYTHLATDWHRRYGNKTDNDDFMNDHVPAKFGPMKETVFSWTHRWHHVIKSNFTDTA GLSKDYYFKNRYIFPMLLHTKTAIVKKDDPNKMRTIWGCSKPWIIADTMLWWEYVAYA KLQPGATPMLWSYETFTGGWLRLNHALFSSYIRHSYITLDWKRFDKKAYFCIIDKIFD GVETFLDFDNGYLPTKDYPDTKSTWTQERSTRLKRLFDWTKENFYHAPIVLPNGHMYV RKFAGIPSGLFITQLIDSWYNYTMLATILSAMGFDPRSCIIKVQGDDSIIRLSALIPP DAHDSFLTKVQELADYYFQSVVSVNKSEVRNELNGCEVLSYRHRHGLPYRDELAMLAQ LYHTKARNPSPEITMAQSIGFAYASFGNHERVRLVLHDIHEYYKLQGYTPNRAGLSLV FGNSPDLMIPHYTLDHFPSLREIKMFLTNAEYVNEETNSRTWPLNHFLHLPCHRT" /product="RNA-dependent RNA polymerase" ORIGIN 1 gaattatctg agaaacaaag tctcacaacc ctctgcctcc aacaataaag cagatttctt 61 tgctcttcta acagctatta cttgccacaa tggaccacct cacttccctt ttcgagcttt 121 ttgctatcac accgaaaaca caaaacaatc tacagtttgt tgggatctac cacagacctc 181 cacactccgt tcgagcaaac ctccgcaacg ttgagaaaca caaaatcaca gtcgctcacg 241 ccatgcacaa gtacctttac ccgcatgaaa tcgacttcgt tatcaaccaa atgcgacgct 301 cagacgtcac tgaagatgcc atacttgctg actttttcga caacaacgtc gaaccacttg 361 aacctgttct tgacgaacac ttcgaacgtg gactctccgc aatgctggat gcttttcgcc 421 ctccgcagaa atgcctgcct gcccacatct atgatgtgca gcaccactac ccatacaaat 481 ggcaagtgaa cgctgaagcc cccttctcca ccgattccta tttcttagcg aatcgaccaa 541 ccttccgcgc agtgtttgaa cgactcgaat cgctctacac acacctcgca accgattggc 601 accgccggta cggaaacaaa accgacaatg atgattttat gaatgatcat gtccctgcga 661 aatttggccc tatgaaagaa acagtcttct catggactca ccgatggcac cacgtcatca 721 aatccaactt caccgacaca gctggattgt ctaaagacta ttacttcaaa aaccgataca 781 tcttcccaat gctacttcac acgaagacag caattgtcaa gaaagacgac ccgaataaga 841 tgcgaaccat ctggggctgt tcaaagcctt ggatcatcgc agacaccatg ctatggtggg 901 aatacgtcgc gtacgctaag ttacaacctg gagccacacc aatgctctgg agttacgaaa 961 ccttcacagg tggctggctt agactcaacc acgcactttt ctcttcatac atacggcact 1021 cgtacatcac actcgactgg aaacgcttcg ataagaaagc gtatttctgc atcatcgaca 1081 aaattttcga tggcgttgaa acattcctcg actttgacaa cggctatttg cctacgaaag 1141 attatcccga taccaaatcg acttggacac aagaacgttc cacccgcctc aaacgcctgt 1201 ttgactggac aaaagagaac ttctaccatg caccaatcgt cctacccaat ggacacatgt 1261 acgtccgaaa attcgctgga ataccatctg gcttattcat cactcaactg atcgattcct 1321 ggtacaacta caccatgctc gcaaccatcc tatccgcgat gggcttcgac cctcggtcct 1381 gtattattaa agtccaaggt gatgattcaa tcatccgcct cagtgcactc atccctccgg 1441 atgctcacga ttctttttta actaaggtcc aagaactcgc cgactactac tttcaatcag 1501 tagtctccgt gaacaagtct gaagtacgta acgagctcaa cggatgcgaa gttttatcgt 1561 accgacacag acacggttta ccataccgcg acgaactagc catgctagct caactgtatc 1621 acacgaaagc acgcaaccca agtcccgaaa tcacaatggc acaatccatc ggcttcgcct 1681 acgcttcctt cggaaatcat gaaagagtac gtctcgtact acatgatatc cacgaatatt 1741 acaagcttca aggctacaca cccaaccgag ccggactcag cctagtcttc ggaaactctc 1801 ccgacctcat gatcccgcac tacacacttg atcactttcc ctcacttagg gaaataaaaa 1861 tgttcctgac taatgcagaa tatgtcaatg aagaaaccaa ttcacgaacg tggcctttaa 1921 accactttct ccatcttcct tgtcatcgca cttagtattt gagcaattgc aattataaca 1981 aaattacaaa aaaaaaaaaa aa //