LOCUS NC_011559 6151 bp ss-RNA linear VRL 10-FEB-2015 DEFINITION Anagyris vein yellowing virus, complete genome. ACCESSION NC_011559 VERSION NC_011559.1 DBSOURCE BioProject accession PRJNA32713 KEYWORDS RefSeq. SOURCE Anagyris vein yellowing virus ORGANISM Anagyris vein yellowing virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Tymoviridae; Tymovirus. REFERENCE 1 (bases 1 to 6151) AUTHORS Koenig,R., Pleij,C.W., Lesemann,D.E., Loss,S. and Vetten,H.J. TITLE Molecular characterization of isolates of anagyris vein yellowing virus, plantago mottle virus and scrophularia mottle virus -- comparison of various approaches for tymovirus classification JOURNAL Arch. Virol. 150 (11), 2325-2338 (2005) PUBMED 15883655 REFERENCE 2 (bases 1 to 6151) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-NOV-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6151) AUTHORS Koenig,R., Pleij,C.W.A. and Lesemann,D.-E. TITLE Direct Submission JOURNAL Submitted (17-SEP-2004) Institut fuer Pflanzenvirologie, Mikrobiologie und Biologische Sicherheit, Biologische Bundesanstalt fuer Land- und Forstwirtschaft, Messeweg 11, Braunschweig D38104, Germany COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AY751780. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6151 /mol_type="genomic RNA" /db_xref="taxon:312275" /organism="Anagyris vein yellowing virus" gene 135..1982 /locus_tag="AVYV_gp1" /db_xref="GeneID:7042951" CDS 135..1982 /locus_tag="AVYV_gp1" /db_xref="GeneID:7042951" /codon_start=1 /protein_id="YP_002308577.1" /translation="MSHVVPVSPRCSVIDCSQGRIPQSSLELSCSTSPILSHSVPLDH PKGTHSFSDCVRNPFFGFRLHPSPPRSPQGDRNVFTLQSLESPGISSIHRDVYEAIKV QEAVLSQSELHRADQLSSNRRRLCSLPHHLSHPSNKGARVHARRSNVLHTSTSAGSVH QGASSSAPSLLSRGSPREQLHRSLPLPQCVHLHNFGQLPALRARRAPRRKLQPATHSF KLVENLSDKISIPKSVSESPGILGPMPLHPHPKRPPPPQRKQSGNNLLQDSRLPRASR GHLPPPTSPAPARAKGSVRLPLHVHKSSAHSPHLRPSWVRKNSLQQASICLGHSTSVG QSSDLRSPQLPHPPKSHLRLLPKSPGQVQAVPITAPSPLLGGEPSILGPHPSNSQAAS EGPKRPKSGRIPLAFPEDKRSKRPIKSRKVPARHCPPAHKAELKAEKGECSSSPLSGS RQIESLKSEARAFLPKNLPEAVELALIDNYCFNFGSFPPSFSPSTSIKPCVPSDTARR LPQSSPPTPVPPVLEAATSRGSSPVRVPSTLPSIRVSSHRAPIDCTSISSCLSPNCDC GASSSSSSSFNSCSSSGSIQCGVQLRNSSGDPSSSHSGTFKFRFPRFGQ" /product="putative movement protein" /note="ORF1" gene 142..5451 /locus_tag="AVYV_gp2" /db_xref="GeneID:7042950" CDS 142..5451 /locus_tag="AVYV_gp2" /db_xref="GeneID:7042950" /codon_start=1 /protein_id="YP_002308578.1" /translation="MSFQLALDALSSTVHRDASLNPVLNSLVQPLQSSLTQFPWIIQK EHIPFLIASGIPSSGFGSTPHPHAVHKVIETFLLFNHWSHLASLPSTVMFMKPSKFRK LSSVNPNFTELINYRLTDADSVRYPTTSLTLPTKELVFMHDALMYFTPAQVLDLFIKA PHLQRLHCSLVVPPESSFTDLSLYPSVYTYTISGNSLHYVPEGHHAGSYNQPLTALNW LKICQIKSPYLNLSVKVLESWGPCHSILIQRGLPLLSGSNLETISFKIPDCLELPEAT FLHQPLRHRLVPREVYDSLFTYTRAVRTLRTSDPAGFVRTHSNKPQYAWVIAQAWDNL QTYALLNSPIRPKVIFDFFLNPLGKFKLFLSQHLHPFLVVNLRYLGLIPPIAKLLLKA PSVPKVEEFHLLFQKIKGPKGLLNLEKFPPGIAPLLTKLNSKLKKGNVHPLLYLALGK LNLLNQKPELFYLRTCLKQLSWPSLTTTALISGLFPLLSLLLQASSPVSLQTLHDAYH SHLHPPQFHLSWRLQPLEVAAPSEFLPLSLQSGSAPTELPLIVPPFPPASVQTVTAEP APQAPQASIPAPPQDPSNVASSSGTAQGTQAPVTLEPSSSGSQDLANNSLAAESSEPP QHLRSINECGALNQVPLDVPSEILNESSPKGDFPPSTLLDDPSCSGPVVDFDFLHPAD YHNSNGSFQTRQRCQGKSQAQFPEKSCLLTSLSSQLDYTPSELRSFLCEMLPDSLLSN QEVKNYGLSTDHLTALSFRIRFECLIHTTHAVIPYGIKNSTKVVNITYFDGPQKHFEP HIKLIGSAPGSNPSKSNLVRSALRFQYNGSFLPFYDAHPHKISVMHAKNLVSNMKNGF DGISSKLVGISDKSPRAKLFELDSMIDVSFPRTVDVIHIAGFPGCGKSHPMQKLLKTK PFKHFRLSVPTNELRSEWKRDLDLPESESWRLCTWETALFKTSSILVIDEVYKLPRGY LDLILLSDPSIQLAIILGDPLQGEYHSTHPSSSNARLPSETLRLSKYIDCYCWWTYRC PKVVANLFGVKTFSDEEGFIHSAITHPPNLPNLVNSIATANTMQSLGHHALTISSSQG MTYSSPVTILLDRHSTLLSPHNGLVALTRSRKGVIFIGNMYQASGHFGTSYMFTRALT QTPIDMISAFPIFHTLPLMHEPITSRRHRLVAGNTVSSPTVNSWALQHLGRLPPHFPV TYDKDVLLSNPILQSSAPEQRLSTLHLPPTRLPLHRDIESCNPSTSSCQALDLTPSPI SHGFYGESFEELAAHFMPAHDPDLKEVLVSDQRSNQFPYLDVPFSLSCQPSSLLAASH KPAKDPTLLINSIKKRLRFRKSGSPYTFTPNDLLLGVMLFESWCKAYCRNPKEVVPFN PALFAECILNEYAQLSSKTQSAIVANASRSDPDWRYTCVRIFAKSQHKVNDGSIFGGW KACQTLALMHDFVVLSLGPVKKYQRIIDHYDRPGFIYSHCGKTPSDLSKWSQEYLRGT EYICNDYTSFDQSQHGEAVIFETLKMRRVSIPDCLIELHMYLKTNVSTQFGPLTCMRL TGEPGTYDDNTDYNLAVLFSQYSISSQPIMVSGDDSVICGLPPTNPSWAKVSELLHLS FKTERTPKPLFCGYYVGPNGCCRNPFALFAKLMISYDLDTLPETLPSYIYEFSIGHRL GDSVQNLFSPSLLPYYSACFDLFCRRCPPSQKVILSFEPIPESFFSKALANCKWVSKT LFSELPGKIRESLVATSRLPNYHSDPKVQYLESELLLSFNNHG" /product="polyprotein" /note="ORF2; contains replication-associated proteins" gene 5444..6013 /locus_tag="AVYV_gp3" /db_xref="GeneID:7042949" CDS 5444..6013 /locus_tag="AVYV_gp3" /db_xref="GeneID:7042949" /codon_start=1 /protein_id="YP_002308579.1" /translation="MDEVKPISAPQPSIPAEGSHLVNPKSAVEPHIILPFQISAAEFG VRETSVQITLSSDPTISTYTALYRHAQLVECEAILFPNFTSSSNPTHCDIIWVPSNST ASPKTILQTYGGSRYTLGGPITSNQTISVPLPLRSVNCMVKDSVLYTDTPRLLAFSPA PLKPSSVPSGTLLVRGRVKLSSPLPQPSG" /product="coat protein" /note="ORF3" ORIGIN 1 gtaatttatt ccccgttcaa ccctttcgag ccttgaacgt tttattttct ttaattttcc 61 ttacctttgc ttcgctctcc ggcccgaagc tttttctttc tgcaactcct tccgaccagt 121 tgcttctact ctagatgagc catgtcgttc cagttagccc tcgatgctct gtcatcgact 181 gttcacaggg acgcatccct caatccagtc ttgaactctc ttgttcaacc tctccaatcc 241 tctctcactc agttcccttg gatcatccaa aaggaacaca ttccttttct gattgcgtcc 301 ggaatccctt cttcgggttt cggctccacc cctcaccccc acgcagtcca caaggtgatc 361 gaaacgtttt tactcttcaa tcattggagt cacctggcat ctcttccatc caccgtgatg 421 tttatgaagc catcaaagtt caggaagctg tcctcagtca atccgaactt cacagagctg 481 atcaactatc gtctaaccga cgcagactct gttcgttacc ccaccacctc tctcaccctt 541 ccaacaaagg agctcgtgtt catgcacgac gctctaatgt acttcacacc agcacaagtg 601 ctggatctgt tcatcaaggc gcctcatctt cagcgccttc actgctctct cgtggttccc 661 ccagagagca gcttcacaga tctctccctc taccccagtg tgtacactta cacaatttcg 721 ggcaactccc tgcattacgt gccagaaggg caccacgcag gaagttacaa ccagccactc 781 acagctttaa actggttgaa aatctgtcag ataaaatctc catacctaaa tctgtcagtg 841 aaagtcctgg aatcctgggg cccatgccac tccatcctca tccaaagagg cctccccctc 901 ctcagcggaa gcaatctgga aacaatctcc ttcaagattc cagactgcct agagcttcca 961 gaggccacct tcctccacca acctctccgg caccggctcg tgccaaggga agtgtacgac 1021 tccctcttca cgtacacaag agcagtgcgc actctccgca cctcagaccc agctgggttc 1081 gtaagaactc actccaacaa gcctcaatat gcttgggtca tagcacaagc gtgggacaat 1141 cttcagacct acgctctcct caactccccc atccgcccaa aagtcatctt cgacttcttc 1201 ctaaatcccc tgggcaagtt caagctgttc ctatcacagc accttcaccc cttcttggtg 1261 gtgaaccttc gatacttggg cctcatccct ccaatagcca agctgcttct gaaggcccca 1321 agcgtcccaa aagtggaaga attccacttg cttttccaga agataaaagg tccaaaaggc 1381 ctattaaatc tagaaaagtt cccgccaggc attgcccccc tgctcacaaa gctgaactca 1441 aagctgaaaa aggggaatgt tcatcctctc ctctatctgg ctctaggcaa attgaatctc 1501 ttaaatcaga agccagagct tttctaccta agaacctgcc tgaagcagtt gagttggccc 1561 tcattgacaa ctactgcttt aatttcgggt cttttccccc ttctttctct ccttctacaa 1621 gcatcaagcc ctgtgtccct tcagacactg cacgacgctt accacagtca tctccaccca 1681 ccccagttcc acctgtcttg gaggctgcaa cctctcgagg tagcagcccc gtcagagttc 1741 cttccactct cccttcaatc agggtcagct cccaccgagc tcccattgat tgtacctcca 1801 tttcctcctg cctcagtcca aactgtgact gcggagccag ctcctcaagc tcctcaagct 1861 tcaattcctg ctcctcctca ggatccatcc aatgtggcgt ccagctcagg aacagctcag 1921 gggacccaag ctccagtcac tctggaacct tcaagttcag gttcccaaga tttggccaat 1981 aactctcttg ctgccgagag ttcagaaccc ccccagcatc tcagatccat aaatgaatgc 2041 ggggctctga atcaagtccc tctggacgtg ccttctgaga ttctcaatga gtcttcaccc 2101 aaaggcgact ttcctccaag cactctgctt gatgacccct cctgctccgg tcccgtggtc 2161 gattttgact tccttcatcc tgcggattac cacaactcca atggatcttt ccagaccaga 2221 cagcgctgcc aagggaaatc tcaggctcaa ttccctgaga aaagctgcct cctcacctct 2281 cttagctccc agctcgacta cacccccagt gagctaaggt cctttctatg cgaaatgctg 2341 ccagattcct tgctgagcaa tcaggaagtg aagaactacg gcctgagcac cgaccacctg 2401 acggcgctca gttttcgcat caggtttgag tgtttgatcc acacgactca cgcagtcatt 2461 ccttacggga tcaagaactc aaccaaggtc gtcaacatca cctattttga cggaccacaa 2521 aagcactttg aaccccacat aaagctgata ggatcagccc ctggttcaaa cccctccaaa 2581 tccaatcttg tcagatctgc cctcagattc cagtacaacg gctccttctt gccattttac 2641 gatgctcatc cccacaaaat ttcagtcatg cacgccaaga atttggtgag caacatgaag 2701 aatgggtttg acggcatcag ttccaaacta gttggaatct ctgacaaatc ccctcgagcc 2761 aagctcttcg agctcgacag catgattgat gtctccttcc ccaggacagt ggacgtcata 2821 catattgccg ggttcccagg gtgcggcaag tctcacccaa tgcaaaagct gttgaagacc 2881 aagcccttca aacacttcag actctcagtc ccaaccaatg agctcagatc tgagtggaag 2941 cgcgacttgg atctgcctga aagtgaatct tggaggctct gcacctggga gactgccctc 3001 ttcaagacct cctcaatcct ggtgattgat gaggtttata agctcccaag aggttacctt 3061 gacctcattc tcctctctga tccctccatc caactcgcaa tcattcttgg agacccgctc 3121 caaggcgagt atcattccac tcacccatcc tcttccaacg ctcgcttgcc ttctgagacc 3181 ttgaggctat ccaagtacat tgactgctac tgctggtgga cctacaggtg cccaaaagtt 3241 gtggccaatt tatttggagt taagaccttc agcgacgaag aaggcttcat ccacagcgcc 3301 atcacccatc cccccaatct tccaaatctg gtgaatagca tagcaactgc caacacaatg 3361 caaagtctgg gacatcatgc cctgacgatc tctagcagtc aaggcatgac atattcatca 3421 cctgtcacca ttcttctcga caggcattct accctactat ctcctcacaa tggactggtg 3481 gctctcacca gatctcgcaa gggtgtcatt ttcataggaa acatgtacca agcctccgga 3541 catttcggaa cttcttacat gttcactcgg gctctcactc agacacccat tgacatgatc 3601 tcagcattcc ccattttcca cactctgcca ctcatgcacg agcccatcac ctctcgccga 3661 cacaggctag ttgctggaaa cactgtttct agcccaactg tcaactcttg ggctctgcaa 3721 catcttgggc gtctcccccc ccacttccca gtgacttatg acaaggacgt gctgctgtcc 3781 aaccccatcc tccagtcttc tgctccagag caaaggcttt caactctcca ccttcctccc 3841 actcggcttc cgttgcatag agacattgag tcctgcaacc catccacctc ttcttgtcag 3901 gctctcgatc tgaccccatc cccaatctca catggcttct atggcgaaag ctttgaagaa 3961 ctggcagctc actttatgcc tgctcatgat cccgacctca aagaagtttt agtgagcgat 4021 caaaggagca accagttccc gtacttagac gttcctttct ccctctcctg ccagccctcc 4081 tctctcctgg ccgcttcaca caagccagcc aaggacccca ctctgctcat caactctatc 4141 aagaaaaggc tgaggttccg caagtctggc tcaccctaca ccttcactcc taatgatctc 4201 ctgctcggag tgatgttgtt cgagagctgg tgtaaagctt actgccgtaa tccaaaagag 4261 gtggtgccct tcaatcctgc tctgtttgcc gagtgcatct tgaatgaata tgctcagctt 4321 tcctccaaga cccagtcagc catcgttgca aatgcttcga gatctgaccc agattggagg 4381 tacacttgcg tgagaatttt tgccaagtcc cagcacaaag tgaacgacgg cagcatattt 4441 ggaggatgga aagcctgcca aaccttggct ctaatgcatg actttgtagt gctcagcctg 4501 ggccctgtca agaagtacca aagaatcatt gatcattatg acagaccagg cttcatctac 4561 agccactgcg ggaaaacccc atctgatctt tccaagtgga gccaggagta tctaagaggc 4621 acagagtaca tctgcaatga ctacacctcc tttgaccaaa gtcaacacgg agaggcagtt 4681 atttttgaaa ctctcaagat gcgaagggtt tccattccag actgtttgat agaactccac 4741 atgtacttaa agactaatgt gtcaacacag tttggaccac tcacttgcat gcgcctcact 4801 ggagaaccag gaacttatga tgacaacact gattacaacc tagctgtcct gttctcccag 4861 tactcaatct cttcccaacc aatcatggtc tctggtgatg actccgtcat ctgcggcctt 4921 cctcccacta acccctcttg ggcgaaagtc tcggagctct tgcatctgag cttcaagaca 4981 gagcgcactc caaagccgct cttctgcggg tattatgttg ggcccaacgg ctgctgcaga 5041 aaccctttcg ccctcttcgc caagttaatg atctcctacg atcttgacac tctgcctgaa 5101 actctaccat cttacatcta cgagttttca attgggcaca ggcttggaga ctcagttcaa 5161 aacctgtttt ctccttctct cctcccctac tacagcgcct gctttgacct attttgcagg 5221 cgctgcccac cttctcaaaa ggtgattctc tctttcgagc caatccctga gtcttttttc 5281 tcgaaggctc ttgcaaactg caagtgggtc tccaaaaccc tgttctcgga attgcctgga 5341 aagattagag aatctctggt tgcgacttca cgcctgccaa actaccattc tgaccctaag 5401 gtccaatacc tagagtctga attgcttctc tctttcaata atcatggatg aagtcaagcc 5461 aatctccgct cctcagcctt ctatccctgc tgaaggctct catctcgtga accccaaatc 5521 cgcagttgaa cctcacatca tcctgccctt ccaaatctct gccgccgaat tcggcgttag 5581 agagacttcc gtccagatca ccctgtcatc cgaccccacc atctcgacct acactgcttt 5641 gtaccgacat gcccagcttg tcgagtgcga agccattctg ttcccaaact tcacttcctc 5701 ttccaacccc actcactgtg acatcatttg ggtcccctcc aattccactg cttccccaaa 5761 gaccatcctc caaacttatg gaggttctcg ctacactttg ggcggcccca tcacctccaa 5821 ccaaaccatt tctgttcccc ttcccttgag gtcggtgaac tgcatggtga aagacagcgt 5881 cttatacacc gacactccca gacttcttgc cttttcacct gcccccctca agccttcttc 5941 tgtgccttct ggcacattgt tggtaagagg gagagtcaaa ctctcttccc ccctcccaca 6001 accttcgggt tgagctgatc tcttcgatcc gtctgtagtt cagggattgg ttgcccttag 6061 caacctgctc aattgtggcc ggtgccacag cctctagcac acagaggtag cattgggttc 6121 aactccccgc ctaaccgagc gtatcggtcc c //