LOCUS NC_024907 2231 bp DNA circular VRL 17-MAR-2015 DEFINITION Ancient caribou feces associated virus, complete genome. ACCESSION NC_024907 VERSION NC_024907.1 DBSOURCE BioProject accession PRJNA261537 KEYWORDS RefSeq. SOURCE Ancient caribou feces associated virus ORGANISM Ancient caribou feces associated virus Viruses; unclassified viruses. REFERENCE 1 (bases 1 to 2231) AUTHORS Ng,T.F., Chen,L.F., Zhou,Y., Shapiro,B., Stiller,M., Heintzman,P.D., Varsani,A., Kondov,N.O., Wong,W., Deng,X., Andrews,T.D., Moorman,B.J., Meulendyk,T., MacKay,G., Gilbertson,R.L. and Delwart,E. TITLE Preservation of viral genomes in 700-y-old caribou feces from a subarctic ice patch JOURNAL Proc. Natl. Acad. Sci. U.S.A. 111 (47), 16842-16847 (2014) PUBMED 25349412 REFERENCE 2 (bases 1 to 2231) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-SEP-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2231) AUTHORS Ng,T.F.F., Zhou,Y., Chen,L.-F., Shapiro,B., Stiller,M., Varsani,A., Kondov,N.O., Wong,W., Deng,X., Andrews,T.D., Moorman,B.J., Meulendyk,T., MacKay,G., Gilbertson,R. and Delwart,E. TITLE Direct Submission JOURNAL Submitted (03-JUN-2014) Molecular Virology, Blood Systems Research Institute, 270 Masonic Ave, San Francisco, CA 94118, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KJ938716. ##Assembly-Data-START## Assembly Method :: Geneious v. R6 Sequencing Technology :: Sanger dideoxy sequencing; 454 ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..2231 /mol_type="genomic DNA" /db_xref="taxon:1542745" /country="Canada" /isolate="AnCFV" /organism="Ancient caribou feces associated virus" /collection_date="01-Jan-2008" gene 194..940 /locus_tag="LP71_gp1" /db_xref="GeneID:20465066" CDS 194..940 /locus_tag="LP71_gp1" /db_xref="GeneID:20465066" /codon_start=1 /protein_id="YP_009058941.1" /translation="MAYRRKTRRKSKGRHRGSKRLSEHMVRAIKAISQIPVETKRFPL SHPFATYLTYGAYSSGSNAIIRANIFNPIPHDDVSTAFKSEESFVGSSIESRGLRWQM NGYLSSAVAKPDVWFRFTVYSENEYFAGSTDGVGGVSPSDKLFDPDHDQTPTWSRWNT QIAKIHFQRKFVLGSASVGQGSLSKKFYIPLRKKMQSADEEGTTVAGTFGEAKGMQYY WVLETLGIGLTALGSDISAVIGTDVYFKDA" /product="Cap" gene complement(1053..2192) /locus_tag="LP71_gp2" /db_xref="GeneID:20465065" CDS complement(1053..2192) /locus_tag="LP71_gp2" /db_xref="GeneID:20465065" /codon_start=1 /protein_id="YP_009058942.1" /translation="MPPREPRFNGIRFFLTYARADAISIDDVADHLHQLADSWLEIVQ EDHVPNEEHPDGGIHYHVVLCFATRYQGALDSFDVLGHHPNWTPIRNATVDLTNRRHY IRKGIRAKEDQHTVKNHKTTACDYIIEPDTRGNVPEYSSQAGRLNWGGILEQATTGEE FLALCRLHQPKDWILRNEALTKYAASYYQEAREPKKSLPPGTLSSFLPRWMNGSNKSL PRYVYSGSFTRTSLDVLIIDSLIMLQPKPDRPKTLLLVGPTRLGKTHWAESLGRHSYM CGMWRSDSFNDRDDYLILDDFDFDFFHGMRKAIWGAQPEFTTVDKWRKGVAKWGKPLI WLCQEEKNPFVALDKNGRPVMAEEERAWYRANCVEVHVTTKLYPE" /product="Rep" ORIGIN 1 ctataggtcg tttcccgctc cactcgctcc acgcttatat ataaaaaagc aagacacgcc 61 gcagtcacca cgcgttatct tatctttcgg taacacagtg taacgttgat aagctatccc 121 gagctaaaca tttctgataa gctattagta gctaacatca gatagccaat ctccgccacc 181 gaccatacat gccatggcgt accgcaggaa gacccgtcgc aagagcaagg gccgccaccg 241 cggctcgaag aggctcagcg agcacatggt ccgtgcgatc aaggccatca gccagatccc 301 cgtggagaca aagcggttcc cgctcagcca cccgttcgcg acgtatctca cgtatggcgc 361 gtactcctcg ggctcgaacg cgataatccg ggccaacata ttcaatccta ttccccatga 421 cgacgtctca accgctttca aaagcgagga atcgttcgtc ggttcctcga ttgaaagtcg 481 aggtctgcgc tggcaaatga atggttattt gtcgtcagcc gtcgcgaagc cagacgtgtg 541 gtttaggttc accgtttaca gtgaaaatga atactttgcc ggatcaaccg acggagtcgg 601 cggggtctca cccagcgaca agctgtttga ccccgatcat gaccaaaccc ccacctggtc 661 ccggtggaac acacagatag cgaagatcca ctttcagagg aagtttgtgc tggggtccgc 721 ttccgtcggg caggggtcct tgagcaagaa gttttacatc ccgctgcgta aaaaaatgca 781 gtctgcggat gaggagggaa caactgttgc tgggacgttc ggagaggcga agggcatgca 841 gtactactgg gtactggaga ccttgggtat tggtctgact gcactaggct cggatatatc 901 cgctgttatc ggcacagacg tgtactttaa ggacgcttag ggttaggaac gaaggccatc 961 cagtggacgt taggttaggc acaatcttaa agtggctaga gcagaacaat attaggaata 1021 gggttctgtt tggtggcact tcaataaata atttattcag gatacaattt cgtagtaacg 1081 tgtacttcta cgcaatttgc cctataccaa gctcgttcct cctcggccat aacaggtctc 1141 ccgttcttat ctaacgctac gaacgggttt ttctcctcct gacataacca aatcagaggc 1201 tttccccatt tagctacccc cttcctccat ttatcgaccg tagtaaactc cggttgcgcc 1261 ccccaaatcg cctttctcat tccgtgaaag aagtcgaagt cgaaatcgtc taagatgaga 1321 tagtcgtctc gatcgttaaa ggagtcggat cgccacatcc cacacatgta actgtggcgt 1381 cccagcgatt cagcccaatg ggttttacca agtcgggttg ggccaaccaa gaggagcgtc 1441 ttcggtctgt ccggtttcgg ctgcaacata atcaaactat caataatcaa tacatcgagg 1501 gaggttcgtg taaacgagcc ggaataaaca tacctcggca aagacttgtt cgacccattc 1561 atccaacgcg ggaggaacga tgaaagagtc ccggggggta gacttttttt gggttcgcgg 1621 gcttcctggt agtacgacgc agcgtacttg gtgagcgcct cgtttcggag gatccagtct 1681 ttaggctggt ggagtcgaca gagggcgagg aactcctctc ccgttgttgc ttgctcaagg 1741 attcctcccc aattgaggcg ccctgcctgc gaagagtact cgggtacgtt gcctctggtg 1801 tcaggttcga tgatgtaatc acacgcggta gtcttgtgat tcttgaccgt gtgttggtcc 1861 tctttagccc ggatcccctt tctgatgtag tgccgtcggt ttgtgagatc gacggttgcg 1921 tttctgatgg gggtccagtt tggatggtgg ccgaggacgt cgaaggagtc gagggcacct 1981 tggtaccggg ttgcgaagca aaggacgaca tggtaatgga ttcctccgtc cgggtgttct 2041 tcgtttggta cgtgatcttc ttgaactatc tcaagccacg agtctgcgag ttggtggagg 2101 tggtcggcga cgtcgtcgat agatatggcg tcggcgcgag cgtacgtaag gaagaacctg 2161 ataccgttga agcggggttc gcgtgggggc attattaatg aaggggaaat gaacgaccta 2221 tccttaagat t //