LOCUS NC_023682 3599 bp RNA linear VRL 20-OCT-2015 DEFINITION Anopheline-associated C virus isolate acc_1.1s segment 1 RNA-dependent RNA polymerase-like protein and hypothetical proteins genes, complete cds. ACCESSION NC_023682 VERSION NC_023682.1 DBSOURCE BioProject accession PRJNA240572 KEYWORDS RefSeq. SOURCE Anopheline-associated C virus ORGANISM Anopheline-associated C virus Viruses; unclassified viruses. REFERENCE 1 (bases 1 to 3599) AUTHORS Cook,S., Chung,B.Y., Bass,D., Moureau,G., Tang,S., McAlister,E., Culverwell,C.L., Glucksman,E., Wang,H., Brown,T.D., Gould,E.A., Harbach,R.E., de Lamballerie,X. and Firth,A.E. TITLE Novel virus discovery and genome reconstruction from field RNA samples reveals highly divergent viruses in dipteran hosts JOURNAL PLoS ONE 8 (11), E80720 (2013) PUBMED 24260463 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3599) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (07-MAR-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3599) AUTHORS Cook,S., Chung,B.Y.-W., Bass,D., Moureau,G., McAlister,E., Culverwell,L., Glucksman,E., Wang,H., Brown,T.D.K., Gould,E.A., Harbach,R.E., de Lamballerie,X. and Firth,A.E. TITLE Direct Submission JOURNAL Submitted (03-JUN-2013) Life Sciences - Parasites and Vectors Division, Natural History Museum, Cromwell Road, London SW7 5BD, U.K. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KF298278. ##Assembly-Data-START## Assembly Method :: manual assembly v. 2013 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3599 /mol_type="genomic RNA" /country="France" /segment="1" /collection_date="2011" /host="anopheline sp" /db_xref="taxon:1398939" /isolate="acc_1.1s" /organism="Anopheline-associated C virus" gene 11..3536 /locus_tag="AACVs1_gp1" /db_xref="GeneID:18985883" CDS join(11..1618,1620..3536) /locus_tag="AACVs1_gp1" /protein_id="YP_009011225.1" /db_xref="GeneID:18985883" /ribosomal_slippage /codon_start=1 /product="RNA-dependent RNA polymerase-like protein" /translation="MDIKKIIEHLDPKNETFYSIEQAFDPSPIWVRATRWFRVRFSPE PNLLVRGIKTAANSLVGGIPRVRNGAVNGAGHAKTVARAAWDTAKYHSTVLVISAVGT CAAIYAATWIWRSRRVLFVQVINDGTMLPIPTLKDHFATRLSKRPEDYGPTLPGLHLR IAAERRRAEQAVFEVFDDIKLRFRDVGGSLSRGKDYVQLKHVCNPVLDSADILRRAKA DECPFDTCKGVGQKCPQRAAFPGALLCHSDYYMDQEDLVACVRSHTFVINHRYTADSK VNHLGEMEVAVEGPYVKGGTSDGTRYSHAYNLWQAEGSVVGKEGAFVYTRVWTGPSMD IYYAYPAPGTYRKDDPQALKRSTDINMVKLTTGHFAHITDHQVSVRTTDGTLVMAFPR TELEKTVLKCGGAIRDSKYISTVTSYVTAKLTAGDHNIASAADLTEIALAACETYALD IYSRHTRNYDPADLGTFKRLWLGFQDSTHRGRLWVTSAYTHDYVFRHPLSALTPWLFR RVEMPGYVRHFTNTRVNLKSLNPDPRPFVTASALIMPSLTTHNTTVPIVCAENLVTSV DTRVLRPCLQPCPFLTRMRKPTRLAAMPGSMHPLSLNNLTRMCRKMGWKTQVVTEESQ WVEGGDTVQIWAPPLKTSDLPSLAPFANPTSYWQLTDKDTCGPYTYQHWTIRSTSTPT MYDTSLNRTYRTRPTGCGTQQPTDEKQQSPSYKISSGTSVNPRDTPLRHLVHEFFRTS EMEWLKDVHEPLPFNQWIKRFPAWRRVILEKAHKEVMAMDVVPKRLGRVDNFLKREAT NGYGDPRNISPRTDEFQCVMGPHVAAIEKAAHQAPFLIKGLSPAQRCDKLSWLAEYDA YVEIDFSRFDMTVSHDMLTIFEHEFLTRQFPDAHPHYRRCIQLASQTEGTSKFGTRYN VQGTRCSGDNHTSIGNGVLNRFLIWVCLRKLPRGTWRSVHEGDDGIIAVKRPWLEQVE YNLNFMRCLGFSAKIKTTLDLTSVIFCGRRIIETPYGLKDACDVVRALKKFNSTMSMG DPMLMLYAKALSYNYTDHNTPIIGALTRSIINILEPGACNITKSKLKRYVAHALNERW LTHGDNVHISYSNLQIKREYDPDPSVIAAVALHEPVTVRSIQAMDQQFKDWEKVKFIP NQVVPLPLDWEPEPAGTQSTGDIRHHCL" gene 11..2521 /locus_tag="AACVs1_gp2" /db_xref="GeneID:18985882" CDS 11..2521 /locus_tag="AACVs1_gp2" /db_xref="GeneID:18985882" /codon_start=1 /protein_id="YP_009011226.1" /translation="MDIKKIIEHLDPKNETFYSIEQAFDPSPIWVRATRWFRVRFSPE PNLLVRGIKTAANSLVGGIPRVRNGAVNGAGHAKTVARAAWDTAKYHSTVLVISAVGT CAAIYAATWIWRSRRVLFVQVINDGTMLPIPTLKDHFATRLSKRPEDYGPTLPGLHLR IAAERRRAEQAVFEVFDDIKLRFRDVGGSLSRGKDYVQLKHVCNPVLDSADILRRAKA DECPFDTCKGVGQKCPQRAAFPGALLCHSDYYMDQEDLVACVRSHTFVINHRYTADSK VNHLGEMEVAVEGPYVKGGTSDGTRYSHAYNLWQAEGSVVGKEGAFVYTRVWTGPSMD IYYAYPAPGTYRKDDPQALKRSTDINMVKLTTGHFAHITDHQVSVRTTDGTLVMAFPR TELEKTVLKCGGAIRDSKYISTVTSYVTAKLTAGDHNIASAADLTEIALAACETYALD IYSRHTRNYDPADLGTFKRLWLGFQDSTHRGRLWVTSAYTHDYVFRHPLSALTPWLFR RVEMPGYVRHFTNTRVNLKSLNPDPRPFRDGVGPHHAKPDNAQHDGTDSVRGKPSDQR GHQSAKTLPAAVPILDKDAEADALGSDAWVDASAEPEQSDEDVQKDGLENSGGDGGIA VGGGGGHSPDLGTTLENIRPTVTGTVREPNIVLAINGQGHVRAVYLPALDDPVNIDPD DVRHVTKQDIQDASDRLWNAAANGREAAITVLQNIIRYKRESQGHSSKASGARILPNL RNGMVERRARTVTIQSVDKTVSSVEEGHSRKGTQRGDGHGRRAETTWTGRQLPQKGGY ERVWRPSQHKSQNRRIPMRHGTSRGRYRESSPPSSISD" /product="hypothetical protein" gene 51..1088 /locus_tag="AACVs1_gp3" /db_xref="GeneID:18985881" CDS 51..1088 /locus_tag="AACVs1_gp3" /db_xref="GeneID:18985881" /codon_start=1 /protein_id="YP_009011227.1" /translation="MRPSIALSKLLIPAQFGFGPRVGSACGSALSRTCLSEASRPQPT PLLVASRAYATGPSMVRDMPKPLQGQPGTLPSTTQRFWSYQPSALARPSTRQPGYGAR GASYLSKSSTTGQCCQYQRSRTTLQPGCQRGLRTMVRRCRASIYALLRNAAVRNKRSS KSSTTSNCASAMLEGLCRVARTTYNSSTFAIQCLIVQTYSAVPRLMSALLTRARAWVK SAHNVPHSQEPSSAIRTTTWTKRTWWRVYGATRLSSTTAIRQIVRLITSAKWKLLWKD LTSKAAHLTAHVTAMRTTSGRRKGPSLARRARLSTLAFGRGPRWTSITRTRRPAHTVR MTHRRSSGPPT" /product="hypothetical protein" ORIGIN 1 ctcttattcg atggacatca agaaaattat tgaacatctc gacccgaaaa atgagacctt 61 ctatagcatt gagcaagctt ttgatcccag cccaatttgg gttcgggcca cgcgttggtt 121 ccgcgtgcgg ttcagccctg agccgaacct gcttgtccga ggcatcaaga ccgcagccaa 181 ctcccttgtt ggtggcatcc cgcgcgtacg caacggggcc gtcaatggtg cgggacatgc 241 caaaaccgtt gcaagggcag cctgggacac tgccaagtac cactcaacgg ttctggtcat 301 atcagccgtc ggcacttgcg cggccatcta cgcggcaacc tggatatggc gctcgaggcg 361 cgtcctattt gtccaagtca tcaacgacgg gacaatgttg ccaataccaa cgctcaagga 421 ccactttgca accaggctgt caaagaggcc tgaggactat ggtccgacgc tgccgggcct 481 ccatctacgc attgctgcgg aacgccgccg tgcggaacaa gcggtcttcg aagtcttcga 541 cgacatcaaa ctgcgcttcc gcgatgttgg agggtctttg tcgcgtggca aggactacgt 601 acaactcaag cacgtttgca atccagtgct tgatagtgca gacatactcc gccgtgccaa 661 ggctgatgag tgcccttttg acacgtgcaa gggcgtgggt caaaagtgcc cacaacgtgc 721 cgcattccca ggagccctcc tctgccattc ggactactac atggaccaag aggacctggt 781 ggcgtgtgta cggagccaca cgtttgtcat caaccaccgc tatacggcag atagtaaggt 841 taatcacctc ggcgaaatgg aagttgctgt ggaaggacct tacgtcaaag gcggcacatc 901 tgacggcaca cgttacagcc atgcgtacaa cctctggcag gcggaagggt ccgtcgttgg 961 caaggagggc gcgtttgtct acactcgcgt ttggacgggg ccctcgatgg acatctatta 1021 cgcgtacccg gcgcccggca cataccgtaa ggatgaccca caggcgctca agcggtccac 1081 cgacataaac atggtcaagc tcaccacagg acacttcgcg cacatcaccg accatcaagt 1141 gagcgtgcgt accacagacg gcactctagt catggcgttc ccgcgcacag agctagagaa 1201 aacggtactc aagtgtggcg gcgcaatacg tgacagcaag tacatcagta ctgtcacgtc 1261 atacgtgact gccaagctaa cggcgggtga ccacaacata gctagtgcag ccgatctaac 1321 cgagatcgca ttggcagcct gcgagacgta tgcgctggac atctacagcc gccacacacg 1381 caattacgac cccgcggatc tgggcacgtt caagcgtttg tggctagggt ttcaagacag 1441 cacgcatcgc gggaggttgt gggtgaccag cgcttacact cacgactacg tgttccgcca 1501 cccactgagc gcgttgacgc cctggttgtt ccggcgagta gagatgccgg gctatgtgcg 1561 gcacttcacc aacacacgcg tcaacctcaa gtcactcaac ccggacccgc ggccctttcg 1621 tgacggcgtc ggccctcatc atgccaagcc tgacaacgca caacacgacg gtaccgatag 1681 tgtgcgcgga aaacctagtg accagcgtgg acaccagagt gctaagacct tgcctgcagc 1741 cgtgcccatt cttgacaagg atgcggaagc cgacgcgctt ggcagcgatg cctgggtcga 1801 tgcatccgct gagcctgaac aatctgacga ggatgtgcag aaagatgggt tggaaaactc 1861 aggtggtgac ggaggaatcg cagtgggtgg agggggggga cacagtccag atttgggcac 1921 cacccttgaa aacatccgac ctaccgtcac tggcaccgtt cgcgaaccca acatcgtact 1981 ggcaattaac ggacaaggac acgtgcgggc cgtataccta ccagcactgg acgatccggt 2041 caacatcgac cccgacgatg tacgacacgt cactaaacag gacatacagg acgcgtccga 2101 caggctgtgg aacgcagcag ccaacggacg agaagcagca atcaccgtcc tacaaaatat 2161 catcaggtac aagcgtgaat cccagggaca ctcctctaag gcatctggtg cacgaattct 2221 tccgaacctc cgaaatggaa tggttgaaag acgtgcacga accgttacca ttcaatcagt 2281 ggataaaacg gtttccagcg tggaggaggg tcattctcga aaaggcacac aaagaggtga 2341 tggccatgga cgtcgtgccg aaacgacttg gacgggtaga caacttcctc aaaagggagg 2401 ctacgaacgg gtatggcgac cctcgcaaca taagtcccag aaccgacgaa ttccaatgcg 2461 tcatgggacc tcacgtggcc gctatagaga aagcagccca ccaagctcca tttctgatta 2521 aaggcttatc gcccgcacag aggtgcgaca aactgtcatg gttggctgag tatgacgcct 2581 atgtggaaat agacttctct aggtttgaca tgactgtctc ccatgacatg ctaaccatat 2641 tcgaacacga attcctgact cgacaattcc ctgacgcaca cccgcactac agaaggtgca 2701 tacaactggc tagtcaaaca gaaggcacca gcaagttcgg taccaggtat aatgtgcagg 2761 gcaccagatg cagtggtgac aaccatactt ccataggcaa cggggtattg aaccgcttcc 2821 tcatttgggt atgcctacgc aagctaccga gggggacttg gaggagtgtc cacgaaggag 2881 acgatggcat tatagccgtg aagagaccat ggttggagca ggtggagtac aacttgaact 2941 ttatgagatg tttgggcttc tctgccaaga tcaagaccac cctcgatctc acatccgtga 3001 tcttttgcgg cagacgcata atcgaaacgc cgtacggtct caaggacgca tgtgacgttg 3061 ttcgcgcact caagaagttc aactctacga tgagtatggg cgaccccatg ctcatgttgt 3121 acgctaaggc actgagttat aattacaccg accataacac cccgatcatc ggtgctttga 3181 cgcggagtat tataaacata ctggagcctg gtgcgtgcaa catcaccaag agtaaactga 3241 agaggtacgt ggcccacgct ctcaatgagc gatggctcac tcacggcgac aacgtgcaca 3301 tatcatactc gaacttacaa ataaaacgcg aatacgaccc agatcccagc gtgattgccg 3361 ccgttgccct gcacgaaccg gttacggtaa gaagcataca ggcaatggac cagcaattta 3421 aagactggga aaaggtcaaa ttcatcccaa atcaagtggt acccctacca cttgactggg 3481 agcctgaacc agctggtaca caatctaccg gcgacataag gcatcattgt ctttgacgac 3541 atttgggagc catcgcccat acccgctagg gggaaaagga ggtccacctc ggtgataag //