LOCUS NC_030234 8644 bp ss-RNA linear ENV 31-MAY-2016 DEFINITION Antarctic picorna-like virus 3 nonstructural protein gene, complete cds. ACCESSION NC_030234 VERSION NC_030234.1 DBSOURCE BioProject accession PRJNA323864 KEYWORDS RefSeq. SOURCE Antarctic picorna-like virus 3 ORGANISM Antarctic picorna-like virus 3 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; environmental samples. REFERENCE 1 (bases 1 to 8644) AUTHORS Lopez-Bueno,A. and Alcami,A. TITLE RNA viromes from Lake Limnopolar, Antarctica JOURNAL Unpublished REFERENCE 2 (bases 1 to 8644) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (31-MAY-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 8644) AUTHORS Lopez-Bueno,A. and Alcami,A. TITLE Direct Submission JOURNAL Submitted (31-JUL-2014) Virologia y Microbiologia, Centro de Biologia Molecular Severo Ochoa, C/ Nicolas Cabrera 1, Campus of the Universidad Autonoma de Madrid., Madrid, Madrid 28049, Spain COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KM259871. ##Assembly-Data-START## Assembly Method :: Newbler v. 2.5.3; CLC Genomic Workbench v. 5 Coverage :: 399 Sequencing Technology :: 454 ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..8644 /mol_type="genomic RNA" /country="Antarctica: Livingston Island, South Shetland Islands, Lake Limnopolar, Byers Peninsula" /isolation_source="freshwater" /collected_by="Alberto Lopez-Bueno and Antonio Alcami" /collection_date="22-Jan-2007" /host="unknown" /environmental_sample /db_xref="taxon:1648483" /isolate="APLV3" /lat_lon="62.38 S 61.01 W" /organism="Antarctic picorna-like virus 3" /altitude="150 m" gene 892..8367 /locus_tag="A9K89_gp1" /db_xref="GeneID:27924865" CDS 892..8367 /locus_tag="A9K89_gp1" /db_xref="GeneID:27924865" /codon_start=1 /protein_id="YP_009255231.1" /translation="MNTLRELDSPPSGNEPLVTCGECKSEVCNNGTQVICGECKADPR GSGQADTGCRLELDSPQSGDEPLVPCGECKSEVCNNGTQVICGECKAESRGSDQADTG CRADSDKEMTRGHDPISKGEGSQKLMDNPLFTYCGDSLDTFTRADISCYDRIRILEDN YMSEISRDGVYNSISSMTDAIRSMPSTLQHQLDYLAVLIEVLGDSNFRDSVKFDTLYV ADLASQVMISFQLLAAAPSAANIVLVFSSVLMKVRISTAMVDRALEFIKITVKAALDS ITSLGYKSEVSVSSMIGVLTQLSGGVKDAIDDRIIDIVLVFMSKMVAFWVTISGGFTE AEFDLATIPQIVAKMREIFANGGDIVMGFLGAYTWVIENFPRFVKGDFSGMLIGKSQT GAFESRVSKVKAIYPLVASGSETILKEEYNLTYVTYDVEVMDLIRLGDRMMKNVSTPQ RPSLKRMLDELRDIQTDRQIKQSQIQTKVTAVGVCFVGGSGVGKSTLMNQTSRALICA AGEVPTADKIVTGQMSDKFDSNELPHHLSIQYDDVANNSANENFDKLLNAVNSQARPF LKASADDKGIMYPGNVACVISTNVPGLNAKKSNCPDSICRRFLHIETSIKPHLVEEVC VSGTKRVCPIKATKDGSARMDIWNFNVMEFITFDKMDPVPPGVVLWNGMYVRPIDWCT KPPEDRTFWDLALFLSKRAKVHFGSQIKMLKTMANGQTEHFCPGCCIPVTICGCTANS EFSSSMINESVDNMVAQFRVYTDFWNHWWSIVKFRAVISVAIGCSPVDYRYVLCMASS SGFVLGALLGYNIVGTVLFLCTWSTLWVGVMIYVSWIRLYRSMSTVDGILTYLAKSTS EVIKENYRRIFGGAAVVSIAYLIYRAIRPKSEQVSYRETLPDNVRTAFVRAEKARTTP IDNVLPLMRRDIGKITIVAGGVKRSCIAFPIESNLYMTVAHLFPTSGEFEITIVHENS LVPTVAKQRLSMSHVSKLDKKDVVLVQIPSAVPRRGYKDFLLGRGTPLDSQAIHIVTM DIANMARETAVSRMYPAWSMFSSTISTDKVTLYKPYKYLSPIGTHDGMCGSLVVDYSK SIIYGIHVAGNGQYGLCDTITREDVDKAMTVFKGFLPANQGDLQIGSHVLQKGLGMIT LEATPDDYNKEVRDHNCVVEGVLDGSGAVFKHPYKPHPFKESVRTEFGKPKFGPPQKI NDAIHKRKALSNLTSPNQEFSLSEVEHAVADYAAAPKLLIACMKPKVKEDYARILSIE EALDGINGEAMGGIDNSTSVGFPFQGKKMRYLARDELDSTLPKIPRELVPANGVDMLE EVAEMEARYKSGITCRPLFKCSMKTNELLSNDKVKARVFMGSNFPFLLVCRKYLAPII RLMSDNKLMFETAKGINMSSIESEELFEYLNKYGGEHIVALDYSAYDQTMSAQVSTAA AGVMVDLMRDLGCSEEHLTIVRGILTDITYPNLNFFGTILQLANSDPSGNCITTELNS SANSLFLRLFFYRLYPELRGKIAYKEAIQTVTFGDDNINAVGPDYLGFNGESIIAIGK ECGMKITMAEKDSAIVKFTNIFDSSFLKCKFRRCADLGHVRAPLDKDSIEKPIHWMKV DSPDPPEVLFSQNVDTMLRKASQHGRDYFDEIKGKLTRIAEKEGVTSLCFWWTYDELI DHDKVNYYDNYTGKHLYDVTEDLKFLTDYVSQAKKPGTQMSKVLHALAVTALTMVVLT SLQMEMLNLYNRGSSPQYEVYKAIRKIVRYLRDQRNVIVGSVVNPYFIGGVDEIATSF GVPFFIARFMASIFQVESRLTPRRDNTDILPYDPNNRPPPSYPPGTFDDEDDPRFDRD DSSISSDEDNDQGFKSESYEEPELEILQVQLSVLDRVAQVSMFVACFWLSFVLTKQVI RDYQFRNSFRSESRGEENPRVRVGWLIAIFEWVVALIPFVNTGRFAEIWTTPRKFIGI LVCCLATHTWVPDSSIPMAKQYIWSRIGYVLRSSFVRLWLAQNNDLIRIQPLCVVLEG PPGGGKTTCALAMVKFMFEGSHINRGDIVVLNEDDEFQSELRSNHKVIILDDVCNTTA AFVQKSPLRRVIDIVNNVPRRALSPDVDLKGNIKISPLLVVITSNVEDLYCNHFSSCP SSIRRRVIRVKVEKKKGYEFPPGRLDFGGWDLHEMKHHKKFGHPPYDNIHPASLELRW DFQNMVVDFRERFETHIANQQMLVDMVNEFFDGETWPAYVKRKYRGAWCNVTWALSNI VCRFSSKWKSQTWDDVVADSLEARLEPGMQLEDIAHEILRAKTLAQQSQGFVPVPYDT LKARFCRFIARSFKSEMEITNCTLASYLEVLGEGAVLRLIKENRAEAFLLSMTQSSVF DDLFVFDSRAGYIDGMFLSLLMGGATVTDCPSQEEHHAQTCAHIAFKTKFPDSLLQAR EMLLDEVSYDLVYLDNNDFCVVEAKVRGIEEARKQSVIRKNALSGALNIDTLSVRAYA YTVETGIMRVS" /product="nonstructural protein" /note="similar to nonstructural proteins of other members of the Picornavirales order; ORF1; this protein contains two domains RNA_helicase; (pfam00910), a 3C_cysteine_proteinase domain (pfam00548) and; a RNA_dependent_RNA_polymerase (pfam00680) domain" ORIGIN 1 aagttgcatt attaggtgca accataattg tttatttttt cccgtgtgag acggaattct 61 catgacaggg cagtcgagag agagcgatct ctctctttgc ctctaatagc aatattagcg 121 ttaccctttt tcgataaaag agaaatatca aaacgatagt agacgaaagt taatctatgt 181 cctacatttg tagggaatga aatactgatt agttgtcatt gacgacagat ctaagctgta 241 atcaacagcc ggacttgtgc aaagttcgat aagtagaata agtactagag attagtggat 301 ttgtgaccca caacttgaat taaaggcttg tatgtgcgga aatgctgtac aagaaaagag 361 ctaaaatgcg ttttcctacg tgacgatata aacgatggag gtggggttca cttatttgga 421 gaaccgacct agacggctgt ttttaacagc acccccagtt gcctttctgg gcttagtttc 481 gggaatagga ccccgaaacg gcgtacgcca ctaaaaagga gaagacgtca agcagcatgc 541 gattaggaca tgtatgtgtt tttatccgat tatggaacca ggtggttccg taattgagac 601 atatacccct atatttaagg tgtcgaaaga tacccattat atgcaattac tggagtattt 661 tgtatatatg tgctgtgagg gcactatcct aggttaccgt gggatcgcaa gatcacctta 721 cggactgagc agtaaaagcc attttggccg tctcttagcg tagagcacac actcatgcga 781 aacccaaact cgaaagagcg ggctagtagg acttagggca gattgatgat caaagacccc 841 ccaaaaggtc tttttctctt tctgcgtctt catcttcctc atatgtttta gatgaacacg 901 ctaagagaat tagactcccc cccaagtgga aatgaaccac tagtgacttg cggcgaatgc 961 aagagtgaag tgtgcaataa tggcacacaa gtgatttgcg gagaatgcaa agctgatcct 1021 agaggatcag gtcaggcgga cacggggtgt cgattggaat tagattcccc ccaaagtgga 1081 gatgaaccac tagtgccttg cggcgaatgc aagagtgaag tgtgcaataa tggcacacaa 1141 gtgatttgcg gagaatgcaa agctgagtct agaggatcag atcaggcgga caccgggtgt 1201 cgagcggata gtgataaaga gatgacgaga gggcatgacc cgatctctaa aggcgaagga 1261 tcacaaaaat tgatggataa cccattgttc acatattgtg gtgatagttt agatacattt 1321 acccgtgcag atatcagttg ctatgatagg attagaatcc ttgaagataa ttatatgtct 1381 gaaatttcga gagatggggt gtataatagt atatcatcga tgacagatgc gattcgttct 1441 atgccatcaa cgctacagca ccaattggac tatttagctg tgctgattga ggtactgggc 1501 gattcaaatt ttcgcgattc tgttaagttc gatactttgt atgttgcgga tttagcgtcg 1561 caggttatga tatcatttca attgttggct gccgcaccga gtgcagcaaa cattgttttg 1621 gttttttcta gtgtattgat gaaggttcgt atatcgacgg ctatggtcga tagagcatta 1681 gaatttatca agataactgt taaagctgcc ttagattcga taacttcatt aggttataag 1741 agtgaagtgt ctgtatctag tatgattggc gtgttgaccc aactttcagg tggagtcaaa 1801 gatgcaattg atgataggat tattgacata gtcttggtgt ttatgtcaaa gatggtagcg 1861 ttttgggtta cgattagtgg gggatttacg gaagctgaat ttgatttagc tactataccc 1921 caaattgtag cgaagatgag ggagattttt gccaatggag gagatattgt tatgggtttc 1981 ttgggcgctt atacttgggt tattgagaat ttcccaagat ttgttaaagg tgatttttcc 2041 ggtatgctga ttggaaagag tcagactgga gcgtttgaat ctagggtttc taaagtgaaa 2101 gccatatatc ccttagttgc tagtggttcg gaaaccattt tgaaggagga atataatctc 2161 acgtatgtga cgtatgatgt ggaggttatg gatttgattc ggttaggtga taggatgatg 2221 aagaatgttt ctactcctca gcgacctagt ttgaaacgaa tgctggatga attgagagac 2281 atccagactg atcggcaaat caaacaatct cagatacaaa caaaggtgac agccgttggc 2341 gtttgttttg ttggtggatc tggtgttgga aaatccactt taatgaatca aacgtcccgt 2401 gcattgattt gtgctgcagg agaggtacca acggctgaca agatagtcac cggtcagatg 2461 agtgataaat ttgattctaa tgaattgcct caccacttgt ctatacaata cgatgatgtt 2521 gcgaataata gtgcaaatga gaactttgac aagttgctca atgcggtgaa ttcacaggcc 2581 cgaccctttc taaaggctag cgccgatgat aaagggataa tgtaccccgg caatgttgcg 2641 tgtgttatat caaccaatgt ccctggtttg aatgctaaga aatcaaattg tcctgattcg 2701 atatgtagac gatttttgca tattgaaact agcataaaac ctcacttggt ggaagaagtg 2761 tgtgtttctg gtaccaagag agtttgcccg attaaggcga cgaaagacgg atcagcccgg 2821 atggatattt ggaattttaa tgttatggag tttataacat ttgataagat ggatccagta 2881 cctccaggtg tagtgctgtg gaatgggatg tatgtgcgtc cgattgactg gtgtacaaaa 2941 ccacctgagg atcgcacatt ttgggattta gcattgtttt tgagcaagcg agcaaaagta 3001 cattttggtt cccaaattaa gatgttaaag acgatggcta atgggcaaac tgaacatttt 3061 tgcccgggtt gctgtatccc tgtgactatt tgtggatgta cggctaatag tgaattttca 3121 tcatcgatga tcaatgagtc tgtcgataat atggtggcac agtttcgggt gtatacagat 3181 ttttggaacc attggtggag tatagtcaag tttagagctg taatatcggt agctattgga 3241 tgctcaccgg tagattaccg atatgtgttg tgcatggcgt ctagttctgg ttttgtgtta 3301 ggtgcgttgt tagggtacaa tatcgttgga acggtattat ttttgtgtac atggtctacg 3361 ttgtgggttg gtgttatgat atatgtatcc tggatccgct tgtacaggtc gatgtccaca 3421 gtcgatggga ttttgactta tttggccaag agtacaagtg aggtaatcaa ggagaattat 3481 aggcgtatat ttggaggtgc cgccgttgtc tcaatagcct atttgattta tcgagcgatt 3541 cgccctaaaa gcgagcaggt atcgtatagg gagacgttac ctgataacgt tcgtacggca 3601 tttgttcgtg cagagaaggc tcgtaccact cccatagaca atgttttgcc gttgatgaga 3661 agggacattg ggaagataac gattgttgct ggaggggtta aaaggtcgtg tattgccttt 3721 cccatcgaat ctaatttata tatgactgtg gctcatttgt tccctacatc gggagagttt 3781 gagatcacaa tagtccatga gaattcgttg gttccgacgg ttgcaaaaca aaggttatct 3841 atgtcgcatg tctccaaatt ggataaaaaa gatgttgttt tggttcagat tccgtccgcg 3901 gtcccccgtc gtggctacaa ggatttcttg ttggggcgtg gtacaccgtt ggattcacaa 3961 gctatccata tagtgacgat ggatatcgca aatatggcga gagaaactgc tgtatctcgt 4021 atgtacccag catggagtat gtttagctcg accatatcta cggacaaagt aacattgtat 4081 aagccgtaca agtacctttc tcctatagga actcatgatg gaatgtgtgg atcgttggta 4141 gtagattata gtaaatctat catttatggt attcacgttg ctggaaatgg ccagtatgga 4201 ttgtgtgata ccattacaag ggaagacgtt gataaagcta tgacggtatt taaaggcttt 4261 ttacctgcaa accagggcga tttgcagata ggtagccatg tccttcagaa agggctaggg 4321 atgataacgc ttgaagcgac accggatgat tataataagg aggttagaga tcataattgt 4381 gttgtggaag gtgttttgga tggcagtggt gctgtgttca aacatcctta caagccacat 4441 ccgttcaagg agagtgttcg gacggagttt ggcaaaccga agtttggacc cccgcagaag 4501 attaatgatg ccatacataa acgtaaggcg ttatcgaatt tgaccagccc gaatcaggag 4561 ttctctttgt cggaggttga acacgctgta gctgattatg cagcggcacc taagttgttg 4621 atagcctgta tgaaaccaaa ggtcaaggag gattatgccc gtattttgtc aattgaagag 4681 gcattggatg gtattaatgg cgaggctatg ggaggtattg ataactccac ctctgttgga 4741 ttccctttcc agggtaagaa gatgcggtac ttggctagag atgaattgga ttctactcta 4801 cccaagattc ctcgcgagct tgttcctgct aacggtgtag atatgctaga agaggtagcc 4861 gagatggaag ctaggtataa gagtggtatt acgtgtaggc cattgtttaa gtgctctatg 4921 aagactaatg agttgttgtc taatgacaaa gtgaaagctc gagtgtttat gggtagcaat 4981 ttcccttttt tgttggtatg taggaaatac ttggcaccta tcattaggtt aatgtcagat 5041 aataagctca tgtttgagac cgctaagggt ataaatatga gtagtattga atccgaggaa 5101 ttgtttgaat atttgaacaa atacggtggt gaacatattg tggcattgga ttattctgcg 5161 tatgatcaaa ccatgtctgc tcaggtatca actgctgcgg caggtgtgat ggtcgatttg 5221 atgcgagatt taggttgctc ggaggagcat ttgaccatag tccgcggtat tttgacagat 5281 atcacatatc ctaacctcaa tttctttggg accattctac aattggctaa tagtgacccg 5341 tcgggaaatt gcatcacaac ggaactgaat agttcggcga attcgctatt tttgcgtttg 5401 tttttctaca ggttgtatcc cgagttgagg ggtaagatag catataagga ggctattcaa 5461 acggtgacat ttggcgatga taatattaac gctgttggac cagattattt aggttttaat 5521 ggcgaatcga tcattgctat cggtaaggag tgtgggatga agataacgat ggctgagaaa 5581 gattcggcaa tcgtgaagtt tacgaatatt ttcgatagta gcttcttgaa gtgcaaattt 5641 cgacgatgtg ctgatttggg gcatgtgaga gctccattag ataaagactc gattgagaag 5701 cccattcatt ggatgaaggt tgattctccc gatcctcccg aggttttatt ctcacaaaat 5761 gttgacacaa tgcttcggaa ggctagccag cacggtagag attatttcga tgagattaaa 5821 ggtaaactaa cccgaattgc tgagaaggaa ggagtgacga gtttatgctt ttggtggact 5881 tacgatgaat tgattgatca tgacaaggtg aattattatg acaattacac tggtaagcat 5941 ttatatgatg tcactgagga tttgaagttt ttgacagatt atgttagtca ggcgaagaaa 6001 ccagggaccc agatgtcaaa ggttttgcat gcacttgcag tcacggcgtt gactatggtt 6061 gtcctgacat cccttcagat ggagatgctg aatttgtata atcgaggtag tagtccccaa 6121 tacgaagtgt ataaggctat tcggaagata gtgcgatatt tgcgcgacca gagaaatgtg 6181 attgtaggga gtgtggtaaa tccttatttt attggtggtg tggatgagat agcgacaagt 6241 ttcggagttc cattctttat tgctaggttc atggcatcca ttttccaagt ggagtctagg 6301 ctgactcctc gccgtgataa taccgatatt ttgccatatg atccgaataa taggccaccc 6361 ccttcgtatc ctccgggtac atttgatgac gaggatgacc caagattcga tcgagatgat 6421 tcgagtattt cttccgatga agataatgac caagggttca agagtgagag ttatgaagag 6481 ccagagttag agatactgca ggtgcagtta tctgtgttgg accgggtagc tcaagtctcg 6541 atgtttgttg catgtttttg gctatcattt gtgttgacca agcaagtgat tcgggattat 6601 caatttcgaa attccttcag gagtgagtct agaggggagg agaatccacg tgtgcgtgtt 6661 ggttggctta tagccatatt cgagtgggtc gttgccttaa ttccctttgt gaatacaggt 6721 aggttcgccg aaatttggac cacacctcgc aaatttattg ggatattagt gtgttgccta 6781 gctacacaca cttgggtccc tgattcctca attcccatgg cgaaacagta tatttggtcg 6841 cgaattgggt atgtattgcg atcatcattt gtacgattgt ggttagccca aaataatgat 6901 ttgatacgaa tccaaccgtt gtgtgttgtc ttggagggac ctccaggtgg tgggaaaaca 6961 acatgtgctt tagcaatggt taaatttatg tttgaaggat cacatattaa tcgtggcgat 7021 attgttgtgt tgaatgagga cgatgagttt caatcagagt tgcgatccaa tcataaggtg 7081 attattttgg atgatgtgtg caatacgaca gccgcgtttg tacagaaaag tccgctgcgt 7141 cgagtaattg acattgttaa taatgtaccg aggagagcgt tgtctccgga tgttgatttg 7201 aagggaaata ttaaaattag tccgttattg gtggttatta cgagtaatgt tgaagatttg 7261 tattgcaacc atttctcatc gtgcccctca tctatacgta ggcgtgttat tcgcgtaaag 7321 gttgaaaaga agaaaggtta tgagtttcca cccggaagat tagatttcgg aggttgggat 7381 ttgcatgaaa tgaagcacca taaaaagttt ggacacccac cctacgacaa tattcatccc 7441 gctagtttag aattacggtg ggactttcag aatatggttg tcgattttcg tgagcggttt 7501 gaaacccata ttgcaaacca gcagatgtta gttgatatgg tcaatgaatt cttcgatggt 7561 gagacatggc cagcctatgt gaagcgaaag tatagagggg cgtggtgcaa tgtcacctgg 7621 gcgctttcaa acattgtttg tagatttagt agtaaatgga agtcacaaac gtgggatgat 7681 gtggttgctg actctttaga agcaagatta gaaccaggga tgcagttaga ggatatagca 7741 catgagatcc taagagcaaa aacattagct caacaatccc aaggtttcgt acccgtacct 7801 tatgatactc tgaaggccag attttgtagg tttatagcta gatcgtttaa gagcgagatg 7861 gagattacca actgtacttt ggccagttat ctggaagtgt tgggagaagg cgcagtgcta 7921 cgccttatta aagagaacag agccgaagcg tttttgttga gtatgaccca gtcgtctgta 7981 tttgacgatt tatttgtgtt tgattcaaga gcaggttata ttgatggaat gtttttatct 8041 ctgttgatgg gcggagcgac ggtcacggat tgcccatctc aagaagagca tcatgctcaa 8101 acgtgtgcac atattgcttt taaaacaaag tttcctgatt cgttgctcca ggcgcgtgaa 8161 atgctattgg atgaagtgtc atacgatttg gtttatctgg ataataatga cttttgcgtg 8221 gtggaagcca aagtgcgcgg gatagaagaa gcgcgcaagc agagcgttat acgcaaaaat 8281 gccttatcag gggctttaaa cattgatacg cttagtgtaa gggcgtatgc ttacaccgtg 8341 gagaccggaa ttatgagagt ctcttagttc acgattagaa cacacctaga cactatcttg 8401 tgatgagata gaattagcca gaatggggct atgagggaag gttaaatccc ccgcatcaga 8461 tgcatccgcc aatttcatat tgtaaaatat atatagagta gttattggtg ggagcctatg 8521 tactattcaa atttagtatg gaattggtac gacgccaatt agatgatccc agaacccgaa 8581 agggttctgg ggttgtttga ttggggttga ccagttcaat ccccaaaaaa aaaaaaaaaa 8641 aaaa //