LOCUS AB326225 7561 bp RNA linear VRL 17-AUG-2007 DEFINITION Apple chlorotic leaf spot virus genomic RNA, complete genome, strain: MO-5. ACCESSION AB326225 VERSION AB326225.1 KEYWORDS . SOURCE Apple chlorotic leaf spot virus ORGANISM Apple chlorotic leaf spot virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. REFERENCE 1 AUTHORS Yaegashi,H., Isogai,M., Tajima,H., Sano,T. and Yoshikawa,N. TITLE Combinations of two amino acids (Ala40 and Phe75 or Ser40 and Tyr75) in the coat protein of apple chlorotic leaf spot virus are crucial for infectivity JOURNAL J. Gen. Virol. 88 (PT 9), 2611-2618 (2007) PUBMED 17698674 REFERENCE 2 (bases 1 to 7561) AUTHORS Yoshikawa,N. and Yaegashi,H. TITLE Direct Submission JOURNAL Submitted (15-JUN-2007) Nobuyuki Yoshikawa, Iwate University, Faculty of Agriculture; Ueda 3-18-8, Morioka, Iwate 020-8550, Japan (E-mail:yoshikawa@iwate-u.ac.jp, Tel:81-19-621-6150, Fax:81-19-621-6150) FEATURES Location/Qualifiers source 1..7561 /sub_species="Plant virus" /mol_type="genomic RNA" /db_xref="taxon:12175" /strain="MO-5" /organism="Apple chlorotic leaf spot virus" gene 153..5786 /gene="POL" CDS 153..5786 /codon_start=1 /protein_id="BAF64465.1" /gene="POL" /translation="MAFSYRTPQEELLSRLPQSQQEVISGYQYERIQKEEEKKVENFS FYLPERTKEWFTKSGVYLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSI KSNKMSKMERLGPNSVRTYDILNRLVTSKDKARYGPLATPERSPCPKKTNIFIHDEIH YWSRTQLESFLMVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGV RSESYTQPLENGYLLSSSSILVHNKKTGVELRYQVSLVYSLGSHHLFHIFPTEDLLKE EVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSVFKKIFIYLSSLKKPDVQSAVAKLRQL SDADISIESVFMVQEFASRIEKNGVGSWSCSFWECMKDWFFDKLPYREVIEKVGLADD FTRRLMKLKPLAFDIHTSDRPLTVRMVIDSIWEERVCMEDSLPNQIFYGRKEWIQYGV MPMIKRGFSKLVPGRDMLEPSYPQEIFSDLLSSTPLGKSYDSRLHSKIASPMVVMRSS HGYSEAAEFKSNCLSICASDDSNKAEKTAYEKEFIEKRRSISNKCLDFHIRKAKVKSL SELAIRLSRVDKAPSVRRKRKVNVRLVPSYLTCSSDVKEVKGNDKLASTVHSENEGNT QGNETQVALDRKKTKVSEGSGPEGKKEEGWFSLSHLTGKEEICSAGLIRTVGNDFLHL ERQIEDLPLVQIGRRKAAYFCLDFPLVYFHDKVSYPTFEATGPIKQAIINAKNKWGID FNSALVQVYEDGCNLPLHKDNEECYDDDGILTINVCGDAKFHTTCHDEIIDLKQGNEI LMPAGFQKRNKHAVQVISEGRTSVTMRVHKRDFSFESKVKFVKGRLDCLFSSIAEVIH KKPEEVMAFVPHILDRCISNKGCSIDDARAICEAYEIKIECEGDCGLVECGSVGLSVG RLLLRGNHFRVASVRRSSIDSLANSSKEIKANGVLDHVMFNFHDRLKAVEPDLNSVEV KVNLERAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMKMIKDDDSNEK NEVSEKLQGLNFFKKKIYGIFGFAGSGKSHAIQNLIHSEFKNSQGILVVCPRKFLAKD WSEKGVNEKDIKTFESALKSDIKGKRLFILDEVSLLPKGFTDLLMLKLHMDGVLKVST IVCIGDPLQAGYFCPKDDGYLSKDGEITRLFKEGVKYKWYSYRINRFMAKKLGISTMN DFTGIDQQSLIYKDMPSAQHFLREGNNHPEVILVASMIEKELYSNYGNVMTFGESQGL TFNCGVIVLSEEAKLCSDAHVMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMC SGIGASKEFILNSSSVKLVLSEKDVAKGAGIDEMDREVRLEGDVWLKSMIYLGKRYHL VEPLGQVIKLTESAIKCHIPVCSHQTLMPELEKIQAREYREFKGRDGWSNQFREEAGP NWKFPYKVNQAMNFEAVYPRHKMDDDLTFLAAIKKRLRFDNVANNYAKLKASENRGKY LAKVFLKHVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHAQRSDSDWPLDKIFLF MKSQLCTKFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRK NFCELEDFARRFSNGSMCVESDYTAFDVSQDHTILAFEVELLRHFGWDENILQSYIRM KCTLGCRLGGFAIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRN LREIDTHNFILSKLSLKAKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRL MDVIDSYFLEFSFAYKLGERLYSHLEIEQLNYHQVLTRFFIRNKHLLRGDSRHNISEL EWLSDEDGDDDKGSQVEDRRRGYSNCWGEKLQNLF" /product="RNA polymerase" gene 5704..7080 /gene="MP" CDS 5704..7080 /codon_start=1 /protein_id="BAF64466.1" /gene="MP" /translation="MMIRGHKLKIAEGDIPIAGVKSSRIYSDVSPFKRASDLMIHWNE FVFKVMPEDIAGDGFRLASIPVIPDSEVKAVIRKRDSTNYVHWGALSISIDALFKKNA GVSGWCYVYDNRWETFEQAKLQKFRFNLDSGSATLVTSPNFPVSLDDPGLSNSICVAV MFENLNFKLDSYPISVRVGTMCRFFDSFLSNVKNKNDSNFLLEASNADPLGASVFGFD DDDQVSELFNYIQTVPTQAIKSREHEIPRGMFGIMGKKTVKSFEFASGSKGLNKIKPQ RGRSSGRSSSQRFAPGFKSQDEKVEHQGLATDLDFENFLKDEGRRKAGSKSIASEGSS VDNISSREFQFARQNQAKENGGSSKSSTKGGRRSESVPGRRRQTPSWKDRGNSGTDTG VHLREHSDPGNLGADGVPGLGGGGQVNGGSEGGEFLQSEVSGGSHQDLQNYIFGPEHK RDDFPSGL" /product="movement protein" gene 6764..7345 /gene="CP" CDS 6764..7345 /codon_start=1 /protein_id="BAF64467.1" /gene="CP" /translation="MAAVLNLQLKVDADLKVFLAAEGRPLHGKTGAILELTLESIFAN IAIQGTSEQTEFLDLVVEVKSMEDQKVVNSYNLKSVVDLIKIFKTTSSDPNINGMTFR QVCEAFAPEARDGLVKLKYKGVFTNLFTTMPEVGGKYPELMFDFNKGLNMFIMNKAQQ KVITNMNRRLLQTEFAKSENEAKLSSVTTDLCI" /product="coat protein" ORIGIN 1 tgatactgaa gaagtgtaca ctcacgtcgt gagtagacaa gtcgacgtaa cgtctcgact 61 gtggccaagg gtcaacatct ttatgatgtt ataaaaacaa atacaatcac attgtattcc 121 aaagctttcc gtgtgagcac gtgagagatt aaatggcttt ctcgtacaga acgccacaag 181 aggagctcct aagtagattg ccacaatctc agcaggaggt tatcagcggc taccaatatg 241 agcgcattca aaaggaggaa gagaagaagg tggaaaactt ctctttttac ctaccggaga 301 gaaccaagga atggttcact aagtctggtg tctatttgtc acctttcgct tatgtgaatc 361 actctcaccc tggttgcaaa actctggaga accacctttt atttaatgtt gtagctagct 421 acattagtaa gtatccatat gtagcttgtt taagtattaa atctaacaaa atgagcaaaa 481 tggaacgttt aggacccaac tctgttcgta cgtatgacat cctgaatagg ctcgttacct 541 ctaaggataa agcaagatat ggaccattgg ccactcccga gagatcacca tgtccaaaaa 601 aaaccaatat tttcatacat gatgaaatcc actattggtc cagaacccag cttgagagtt 661 tccttatggt gcacagacca aagaatttat gggccactct tgtctttcct cctgaaattt 721 tagctggtta caaatcttct gtacttcctt tcctatacca atttgaaatt catggaaaag 781 atcttgtgta catgcctgat ggggttcggt ctgagagtta cacgcaacct cttgagaatg 841 ggtatctgct cagctccagt agtattttgg ttcataacaa aaaaactggt gttgagttac 901 gttatcaggt tagcctggtt tattcccttg gctctcatca tttattccat attttcccaa 961 ctgaggacct acttaaggag gaagtgagaa gatttgggcc atatgacctt tttgacgttg 1021 gtagtttatt cgtcaaacca gttagggtgc ccattcagga ttttccactc agcgtgttca 1081 aaaaaatttt tatctatctg agttccttaa aaaaacctga tgttcaatct gcggtggcaa 1141 aactgagaca gctgtcagac gcggacattt ccatagagtc cgtgtttatg gttcaagaat 1201 tcgcaagcag aatagaaaag aatggggttg gaagttggtc atgctccttc tgggagtgca 1261 tgaaggattg gttctttgac aagctccctt atagagaagt cattgaaaag gttggtttgg 1321 ctgatgactt cacgagacgt ctaatgaaac ttaagccgct ggcttttgat attcacacct 1381 cagatagacc attgacagtg aggatggtaa ttgacagcat atgggaggaa agagtctgca 1441 tggaagatag cttgcccaac caaatcttct acgggcgtaa ggagtggata caatatgggg 1501 ttatgcccat gataaagagg ggtttttcaa aacttgtgcc aggtcgtgac atgcttgaac 1561 cctcatatcc tcaggagatt ttctcagacc tactttcttc aactccttta ggcaaatctt 1621 atgactccag gctgcattcg aagatcgcaa gcccaatggt cgtgatgcgt tcttcacacg 1681 gttactcaga ggccgcggaa tttaaatcga attgccttag tatatgtgcg tcagatgatt 1741 caaataaggc agagaaaacc gcatacgaga aggagtttat tgagaaaagg agaagcattt 1801 ccaacaaatg tttggatttt cacatcagga aagcaaaggt taaaagtttg agtgagcttg 1861 caatcagact ttcaagggta gacaaggctc cttccgtcag gagaaagagg aaggtcaacg 1921 tccgtctggt tcctagttac ttaacatgct catctgatgt gaaggaagtc aaagggaatg 1981 ataagctcgc ttcgactgtg cactctgaga atgaagggaa cactcaagga aatgagacac 2041 aagttgccct cgataggaag aaaactaaag tcagtgaagg ttcaggtcca gagggaaaga 2101 aagaagaagg ctggttttca ttgtcgcatt taactggaaa ggaggagatt tgttctgctg 2161 ggctcattag gaccgtgggt aatgattttc tccatcttga gagacaaata gaggatctgc 2221 ctcttgtgca aataggaaga cgaaaggccg cctacttctg tttggacttt cctttggtgt 2281 acttccacga caaggtgtca taccctactt tcgaggcaac agggccaatc aagcaggcga 2341 taatcaacgc aaagaataaa tggggaattg acttcaacag tgctcttgtt caagtttacg 2401 aagatggctg caatcttcct ttgcacaaag acaatgagga gtgttatgat gacgatggta 2461 tactcactat taatgtctgt ggagatgcta agttccacac gacctgtcat gatgagatta 2521 ttgacctgaa gcaaggaaat gaaatcctga tgcctgctgg ttttcaaaag agaaacaagc 2581 acgctgttca agtgatctcg gagggtagaa caagtgtgac aatgagagtc cacaaacgtg 2641 actttagttt cgaatccaaa gtcaaatttg tcaaagggag attagactgc cttttctctt 2701 caattgccga agtgatccac aagaaaccag aggaggtgat ggctttcgtt ccccacatcc 2761 tggataggtg catcagcaat aaaggctgtt cgattgatga tgcgagggcg atatgcgagg 2821 cctatgagat aaagattgag tgtgaagggg actgcggttt ggtggaatgt ggaagtgttg 2881 gactgtctgt agggaggctc ttgctgagag gtaatcattt tcgagtcgca tcagtaagga 2941 gatcatcaat tgactccctt gctaactcta gcaaggaaat caaggccaat ggagttcttg 3001 accatgtcat gtttaatttt catgacagac ttaaggcagt tgaaccagat ctgaactctg 3061 ttgaggttaa ggtcaatctt gagcgtgccg gtaagttgct caaaagttta atggatggaa 3121 tgacggggat agtgtcacac aattcaactc atgaagggtg gaggatgatc aaagggataa 3181 acagcacatc tgagatgaga agtttcatga agatgattaa ggacgatgat tccaatgaaa 3241 aaaatgaagt ctctgagaag ctccaaggtc tgaatttttt taaaaagaaa atctacggaa 3301 tctttggttt tgctggttcg ggcaaaagtc atgcaatcca aaatttaatt cattctgaat 3361 tcaagaactc acaaggtatt ttggttgtat gtccaaggaa atttctcgcc aaggattgga 3421 gtgaaaaggg tgtgaatgag aaggatatca aaacttttga gagtgctctt aaaagtgaca 3481 tcaaaggaaa aagacttttc attcttgatg aggtaagttt gctacctaag gggtttacag 3541 atcttctgat gctcaagtta catatggatg gagttctcaa ggtctctaca attgtgtgca 3601 taggggatcc actgcaggct gggtacttct gcccaaagga cgatgggtat ctatcaaaag 3661 atggcgagat aacgagactt ttcaaggagg gagtcaagta caagtggtac agttacagaa 3721 tcaatagatt catggcaaag aagttgggga taagcactat gaatgatttc acggggattg 3781 atcaacagag tttgatttac aaggacatgc catctgctca gcattttcta agggaaggaa 3841 ataatcaccc tgaagtgatc ctggttgcca gcatgataga gaaagagctc tattctaatt 3901 atggaaatgt gatgaccttt ggggaatctc aaggcctaac tttcaactgc ggtgtcattg 3961 tgctttctga agaagctaaa ctgtgctccg atgcacatgt catggttgcc ataacaagat 4021 tcagaagagg tttctgtttc gctcttggaa gcaaggggtc aaaagaggat tacatgaggt 4081 caatgaaaag tggtcttctg caaagaatgt gctcggggat aggagcttcc aaagagttta 4141 tcctgaactc atcatcagtt aaacttgtct tgagtgagaa ggatgtggcg aaaggagcag 4201 gaatagatga gatggacaga gaggtcagat tagaagggga tgtttggctt aaaagcatga 4261 tctaccttgg gaaaagatac catcttgttg aaccattggg tcaggtgatc aagttaactg 4321 agagtgcaat caaatgtcat atcccagtat gctcccacca gactttgatg ccggaattgg 4381 aaaaaattca ggcaagagag tacagagaat tcaaagggag ggatggttgg tcaaaccaat 4441 tcagagagga agcggggcca aattggaaat ttccttacaa agttaatcag gccatgaatt 4501 ttgaggcagt gtatccaagg cacaaaatgg atgatgatct cacttttctg gctgccatta 4561 agaagagatt acggtttgac aatgttgcca acaattatgc aaaactcaag gcatcagaaa 4621 atagaggcaa atatctagca aaagtttttc tcaagcatgt tccaatcaaa tgcggaagag 4681 accaaagatt acttgatcag tgcagacaag agtttgagga aaccaagctt tcaaagagcg 4741 cagccacaat aggtgcacat gctcagaggt cagattcgga ttggccactg gacaaaatat 4801 ttctctttat gaaatcccaa ttgtgtacaa agttcgaaaa gagattcaca gaggccaagg 4861 ccggacaaac acttgcatgt tttccacata aaattctggt cgaatttagt ccctggtgca 4921 gatacacaga aaaggtcctt acagcgaatc tgcccgataa ttactacatt catcagagaa 4981 agaacttttg tgagttggag gattttgcaa ggagattttc aaatggctcc atgtgcgtcg 5041 aatcggatta caccgctttt gatgtttctc aagaccatac aatacttgca tttgaggtgg 5101 aacttctgag gcattttggc tgggatgaaa acattcttca aagttacatc aggatgaagt 5161 gcaccttagg gtgcagattg ggcggttttg caataatgag attcacagga gaattttcaa 5221 ctttcttgtt caatactttg gcgaacatgg tgttcacttt ttgcaggtat gaagttccag 5281 atggcacacc aatatgtttt gctggggatg atatgtgtgc tctgaggaat ttgagagaaa 5341 tagataccca taactttatt ttgagcaaat tgagccttaa agcgaaagtg aacaggacaa 5401 aggtgccaat gttttgtggg tggagacttt gctgtgatgg attgattaag gaaccatgct 5461 taatttatga gaggttgcaa gttgccatag aaaatgggag attgatggat gtgatagatt 5521 cctatttctt ggagttttca tttgcctaca agttaggtga gaggctctat tcacatcttg 5581 aaattgaaca gttgaattat caccaggttc taacaaggtt cttcatcagg aacaagcatt 5641 tgctaagggg tgattcgagg cataatattt cggaattgga gtggctttca gacgaggatg 5701 gcgatgatga taaggggtca caagttgaag atcgcagaag gggatattcc aattgctggg 5761 gtgaaaagct ccagaatcta ttctgatgtg agtcctttca aaagggcctc tgacctcatg 5821 atccattgga atgagtttgt atttaaggtc atgccggagg acatagcagg tgatggcttc 5881 agactagctt cgattccagt catacctgac tctgaggtga aggcggtgat taggaaaaga 5941 gatagcacca attatgttca ttggggagcg ctttcaattt caatagacgc attgtttaag 6001 aagaatgctg gtgtctccgg atggtgttat gtgtatgaca acaggtggga aacctttgaa 6061 caagccaagc tgcagaagtt taggtttaac cttgatagtg gatcagccac gctggtgact 6121 tctccaaatt tccctgtttc tcttgatgat ccgggacttt caaattcaat ctgtgtcgcg 6181 gtgatgtttg agaatctaaa cttcaagttg gatagctacc ctatcagcgt tagggtcggg 6241 accatgtgca gattcttcga cagcttcttg agcaatgtga agaacaaaaa tgattcaaac 6301 ttccttttgg aagcttcaaa tgcagaccca ctaggtgcaa gcgtctttgg gtttgatgac 6361 gatgatcagg tgagtgagct gtttaactac atccaaaccg tgcctaccca agcgatcaaa 6421 tcaagggagc acgaaatccc aagaggaatg tttgggatta tggggaagaa aactgtcaaa 6481 tcatttgaat tcgcatctgg gtcaaagggc ttaaacaaga taaagccaca gaggggaaga 6541 tcgtcaggga gatcatcaag ccaaagattt gcccctggat ttaagtccca ggatgagaaa 6601 gttgaacatc aaggcttggc aactgatttg gattttgaaa actttctgaa agacgaaggg 6661 agaaggaaag ctggatcaaa atccattgct tcagaagggt catccgtgga taacatttct 6721 tcaagagaat ttcagttcgc tagacaaaat caggcgaagg agaatggcgg cagttctaaa 6781 tcttcaacta aaggtggacg cagatctgaa agtgttcctg gccgcagaag gcagacccct 6841 tcatggaaag acaggggcaa ttctggaact gacactggag tccatcttcg cgaacatagc 6901 gatccaggga acctcggagc agacggagtt cctggacttg gtggtggagg tcaagtcaat 6961 ggaggatcag aaggtggtga attcctacaa tctgaagtca gtggtggatc tcatcaagat 7021 cttcaaaact acatcttcgg acccgaacat aaacgggatg actttccgtc aggtctgtga 7081 ggcttttgct ccggaggcaa gagacgggct ggtcaaacta aagtacaaag gggtcttcac 7141 aaacctcttt acaaccatgc ctgaagtggg tggcaaatac ccagagctca tgttcgactt 7201 caacaaaggt ttgaatatgt ttataatgaa caaagctcag caaaaggtaa ttactaatat 7261 gaaccggcgt cttttacaga ctgagtttgc aaagagtgaa aacgaggcga aactttcgtc 7321 tgtcacgact gatctttgca tttaatctgt tgaagaggct tggttctata aataaaatga 7381 ataaataaac agtgtgtgtt tgatatgtat aattgtatta gcagttattt gcttaaataa 7441 tttgtgtatg tcgttgcatt cgaactcttg aacccatgaa agagtataaa gagtcatggt 7501 gttaatttgg agtgtttaga cttataataa atagcctgta gacttttaaa tattttacta 7561 c //