LOCUS APCCOMS 7552 bp RNA linear VRL 31-JAN-2003 DEFINITION Apple chlorotic leaf spot virus genomic RNA, complete genome. ACCESSION D14996 VERSION D14996.1 KEYWORDS . SOURCE Apple chlorotic leaf spot virus ORGANISM Apple chlorotic leaf spot virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. REFERENCE 1 (bases 1 to 7552) AUTHORS Sato,K., Yoshikawa,N. and Takahashi,T. TITLE Complete nucleotide sequence of the genome of an apple isolate of apple chlorotic leaf spot virus JOURNAL J. Gen. Virol. 74 (PT 9), 1927-1931 (1993) PUBMED 8376968 REFERENCE 2 (bases 1 to 7552) AUTHORS Yoshikawa,N. TITLE Direct Submission JOURNAL Submitted (14-APR-1993) Nobuyuki Yoshikawa, Iwate University, Bioscience and Technology; Ueda 3-18-8, Morioka, Iwate 020, Japan (Tel:81-196-23-5171(ex.2516), Fax:81-196-25-7667) FEATURES Location/Qualifiers source 1..7552 /mol_type="genomic RNA" /db_xref="taxon:12175" /isolate="P-205" /organism="Apple chlorotic leaf spot virus" CDS 152..5809 /codon_start=1 /protein_id="BAA03641.1" /translation="MAFSYRTPQEELLSRLPQSQQEAISGFQYERFQKEEEKKVENFS FYLPEKTREWFTKSGVYLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYSYVACLSI KSNKMSKMERLGSNSVKTYDILNRLVTAKDKARYGPLARPERSPCPKKTNIFIHDEIH YWSRDQLETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGV RSESYTQPLENGFLLSSSSILVRNKATGVEIRYQVSLVYSLGSHHLFHIYPTEDLMKE EVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSVFKKIFIYLSSLKKPDVQSAVAKLRQL SDADISIESVFMVQEFASRVEKNGVGSWSCSFWECMKDWFFDKLPYREVLEKIGLAND FTRRLMKIKPLAFDIHTTDRPLTVRMVIDQIWGERQSSCDDVPNIIFYGRKEWLEHGL LPKVKKGLAKLVPGRETGGSDYPEEIYSDLLSSTSIWRSYDENLRHRKASPIVILKSE KAYSEAPGFSSNCISLCSTPFGEVIERTPFEVERERKKRELSFGCLDFHIRKMKVKDA SELSIKLDEQNKEGLRRQKRKEKAKKTRMIPVHLLELGSDQKEKNLGQEASKGKGIEQ EERRKSDEAKFDSGPSGVCSIKAENPVDAQHIAEPVPCLKLNDLIGKEKICSSGLIKT VGNDYLTLARQIEDMPLAQLKNRKAAYFCIDYPMVYFHDKISYPTFEATGEIKQIIMR ARDKWGANFNSALIQVYNDGCRLPLHSDNEECYDDDEILTINVVGDAKFHTTCHGEII DLRQGDEILMPGGYQKMNKHAVEVASEGRTSVTLRVHKRDFSFESKLRFIKGKFDCLF VSIAEIIHKKPEEVMMFIPHIVDRCVSNRGCSLDDARAICEKYEIKIECEGDCGLVEC GTIGLSVGRMLLRGNHFTVASVRRSSMDSLANSSKELKSNGVLDHVMFNFHKRLRSVE PDLTVEEIKVDSSRAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMSMI KGKSEETRGDLFDRVQELNFMKVKIYGIFGFAGSGKSHAIQNLIQTEFKGSQGVMVIC PRRFLAKDWSEKGVDEKDIKTFESALKSDVKGKRLFILDEISLLPKGFTDLLMLKMHM EGILKKSTIVCIGDPLQAGYFCPKDDNYLSREGEIKRLFKDGVNYKWYSYRINKFIAK KLAIETMNDFIGIDEQNLIYKDMPSAHHFMENKGNHIEVILVPSMIEKELYSNYGNVM TFGESQGLTFNCGVIVLSEEAKLCSDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMK SGLLQRMCSGIGASKEFILGSSSVKLILSEKDVSKGAGVDEMDREARLEGDVWLKSMI YLGKRYHIVEPLGQVIKLTENAIKCHIPVCSSQTLGPELDNIQAREFREFKGKNGWSN QFREEAGPNWKHPYRVNQAMSYEAIYPRHRMDDDLTFLAAIKKRLRFDNVANNYAKFK AAESRGKYLAKVFLRHVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHSQRSDSDW PLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPD NYYIHQRKNFSELEDFAKRFSNGSMCVESDYTAFDVSQDHTILAFEVELLKHFGWDDK VLQSYIKMKCTLGCRLGGFAIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAG DDMCALRNLREIDTHECILSKLSLKAKVNRTKVPMFCGWRLCFDGLIKEPCLIYERLQ VAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLEIEQLNYHQVLTRFFIRNKHLLRGD SRHNISELEWLSDEDSDDDKGSQIEDRRRGYSNCWGEKLQNLF" /product="216.5K protein" CDS 5727..7100 /codon_start=1 /protein_id="BAA03642.1" /translation="MMIRGHKLKIAEGDIPIAGVKSSRIYSDVSPFRKASDLMIHWNE FVFKVMPEDIAGDGFRLASIPVIPSSEVQAVLRKRESTNYVHWGALSISIDALFRKNA GVSGWCYVYDNRWETFEQAMLQKFRFNLDSGSATLVTSPNFPVSLDDPGLSNSISVAV MFENLNFKLESYPISVRVGNMCRFFDSFLSCVKNKVDSNFLLEAANADPLGAGAFGFE QDDQVSELFNYIQTVPTQAIKSREHEVPRGLFGMMGKKKVKSFEFASGSRNLGRRKPQ RGRPLERSASLRVAPGFRSQDERVEHQGLSTDSDFENFLRKGKGKAGTESITSEGSSF DNISAREFQFARQDQKAKDGGSAEPPIKSGRRSESVPGRRRQTPSWKDRGNSGTDTGG HLREHSDTGDLGTNRVPGRAGGGEIHGGSEGGGVIQSEGGSRFDQNIQDYIFGPEYKQ HDLPPSV" /product="50.4K protein" CDS 6784..7365 /codon_start=1 /protein_id="BAA03643.1" /translation="MAAVLNLQLKVDADLKAFLAAEGRPLHGKTGAILEQTLEAIFAN IAIQGTSEQTEFLDVLVEVKSMEDQKVVGSFNLKEVVGLIKIFRTTSSDPNISSMTFR QVCEAFAPEARNGLVKLKYKGVFTNLFSTTPEVGGKYPELMFDFNKGLNMFIMNKAQQ KVITNMNRRLLQTEFAKSENEAKMSSVTTDLCV" /product="coat protein" /note="21.4K protein" polyA_site 7552 ORIGIN 1 tgatactgat acagtgtaca ctcacgtcgt gagtaaacag attgacgtaa cgcctcaatc 61 gtggtcaagg accagcattt taatgctaca acgttaaata caatcccatt gtattcaaga 121 actttccgtt taactacgtg aaaggttaca aatggctttc tcttatagaa cgccacagga 181 agaacttctg agcaggttac ctcagtctca gcaggaagcg atcagcggat ttcagtacga 241 gcgatttcaa aaggaggaag agaagaaggt ggaaaacttc tctttttacc taccggagaa 301 gaccagggag tggttcacta agtcaggtgt atatctctca ccctttgctt atgtcaatca 361 ttctcaccct ggttgcaaaa ctctggagaa ccacctttta tttaatgttg tagctagtta 421 tattagtaag tattcttatg tagcttgtct tagtattaag tcgaataaaa tgagcaagat 481 ggaacgtttg ggttccaatt cagtcaaaac ctatgacatt ttgaacagat tagttactgc 541 taaggacaag gctcgatatg gacctttggc caggcctgag cggtctccat gtccaaagaa 601 aacaaacatt ttcattcatg atgagatcca ttattggtca agggatcaac ttgagacatt 661 ccttcaggtt cacagaccca aaaatttgtg ggcgactctt gtttttcccc ctgagatctt 721 ggctggttat aagtcgtcag ttttaccatt tctttaccag tttgagattc atggaaaaga 781 tttggtttac atgcctgatg gagttagatc agagagttac actcaacctc ttgagaatgg 841 atttcttctg agttcaagca gtatacttgt gagaaacaag gctactggag ttgaaattag 901 atatcaggtt agtcttgtgt attctctggg ttctcaccat ttgttccaca tttaccccac 961 ggaggacctg atgaaagaag aggtgagaag gtttggacct tatgatttgt tcgatgtggg 1021 ttcattattt gtcaagccag tgcgcgtccc tatccaagac ttccctttga gtgtcttcaa 1081 aaagatattc atttatctta gttcattaaa gaagcctgat gttcagtctg cagtggccaa 1141 actcagacag ttatccgatg ccgacatttc cattgagagt gttttcatgg tgcaggagtt 1201 tgcaagtagg gtggaaaaaa atggagtcgg aagttggtcc tgctcatttt gggagtgcat 1261 gaaggactgg ttttttgata agctgccata cagagaggtg ctggaaaaaa ttggattggc 1321 gaatgacttt accaggcgtt tgatgaaaat caaaccattg gctttcgata tccacacaac 1381 agacagacca ctcacagtca ggatggtcat agaccagatt tggggagaga ggcaaagctc 1441 ttgtgatgat gttccaaata ttatatttta tggaaggaag gaatggcttg agcatgggct 1501 attgcctaag gtgaagaaag gcttagccaa attggttcca ggaagggaga ctggtggaag 1561 tgattaccca gaagaaatct attctgattt gctgtcatcc acctcaattt ggaggtctta 1621 tgatgagaat ctaaggcaca ggaaagccag tcctattgtg atacttaagt ccgaaaaggc 1681 atactctgag gcccctgggt tcagctcaaa ctgtatcagc ctgtgttcta cgccttttgg 1741 tgaggttatt gaaaggaccc cttttgaggt ggaaagggaa aggaagaaaa gagagttgtc 1801 ttttggttgt cttgattttc acattagaaa gatgaaggtt aaagatgctt ctgaactttc 1861 catcaagttg gatgagcaga ataaagaagg tttgaggagg cagaaaagaa aggagaaggc 1921 gaagaaaaca aggatgattc ctgtgcatct gctagaatta ggttcagatc aaaaggaaaa 1981 gaatttgggg caggaggctt ccaaaggaaa aggaattgaa caggaagaga ggaggaaaag 2041 tgatgaagca aagtttgatt ctgggccctc gggagtttgc agcataaaag cggaaaatcc 2101 tgttgatgca caacacattg ctgagcccgt gccatgtttg aaattgaatg atctgattgg 2161 caaagagaaa atctgttctt ctggtcttat caaaacagtt ggaaatgatt atctcacttt 2221 ggccaggcag atagaggata tgcccctcgc ccagttgaag aacaggaaag cagcatattt 2281 ctgcattgac taccctatgg tgtactttca tgacaagatt tcatacccaa cttttgaagc 2341 tactggtgag atcaaacaaa tcatcatgag agcaagagac aaatggggtg caaatttcaa 2401 cagtgctcta attcaggtct ataatgacgg gtgcaggtta cctttgcata gcgataatga 2461 ggagtgctat gatgatgatg agatactcac gatcaatgtt gtcggtgatg caaaatttca 2521 cacaacctgt catggtgaaa tcatagatct gaggcagggt gatgaaatac tgatgcccgg 2581 gggttaccag aagatgaaca agcatgctgt ggaagtggca tcggaagggc gaactagtgt 2641 tactttgaga gtgcacaaaa gggacttcag ctttgagtca aaactcaggt tcattaaagg 2701 aaaatttgat tgcttgtttg tcagcatcgc ggaaataata cacaaaaaac cagaagaggt 2761 gatgatgttt atcccacata ttgtggacag atgtgtgagc aataggggtt gctcacttga 2821 tgacgcaaga gcaatatgtg agaaatatga gatcaagata gaatgtgaag gggactgtgg 2881 cctagttgag tgtggaacaa ttggtctgtc tgttgggagg atgctcctca gagggaatca 2941 ttttacagtg gcttcggtaa gaagatcatc catggactcc cttgccaatt catcaaaaga 3001 actcaaatca aatggagtct tggatcatgt aatgtttaat tttcataaaa gacttagatc 3061 cgtggaacct gatctgactg tagaggaaat caaagtggat tcttcaagag cggggaagtt 3121 gctcaaaagt ttgatggatg gaatgacagg aatagtttcc cacaactcaa ctcatgaggg 3181 gtggagaatg atcaaaggca taaatagcac ctccgagatg agatcattca tgagtatgat 3241 caaaggtaaa agtgaagaga ccaggggtga cttatttgac agagttcagg aactgaactt 3301 catgaaggtt aagatctacg gcatatttgg gtttgctgga tcagggaaga gtcatgcaat 3361 tcaaaatctc attcagacag aattcaaagg atcacaaggt gttatggtga tctgtccaag 3421 aaggtttttg gccaaggact ggagtgaaaa aggggtggat gagaaggata ttaaaacctt 3481 tgagagcgca ctgaagtcag atgttaaagg aaagagatta ttcatacttg atgaaatcag 3541 tttgttgcct aaaggtttca ctgacctctt gatgctcaaa atgcatatgg aagggattct 3601 gaaaaagtca acaattgtgt gtattggtga ccctctgcaa gctgggtact tctgtcctaa 3661 ggatgacaat tatttgtcta gggagggaga aatcaagagg cttttcaaag atggggtcaa 3721 ttacaaatgg tacagctaca ggattaataa gtttattgca aagaagctgg ccatagagac 3781 aatgaatgac tttattggca ttgatgagca gaatttaata tacaaagata tgccatctgc 3841 tcaccatttc atggagaaca aagggaatca cattgaagtg attctcgttc ccagcatgat 3901 agagaaagag ttatactcga attacggcaa tgtgatgact tttggcgagt cacagggtct 3961 tactttcaac tgtggggtca tagtgctgtc cgaagaggcc aagctatgct ccgatgctca 4021 tataatggtg gcgatcacaa gatttaggcg aggtttctgc tttgcacttg gcagtaaagg 4081 gtcaaaggag gattacatga gatccatgaa aagtggattg cttcaaagga tgtgctccgg 4141 gattggtgct tctaaggaat ttattctagg atcctcttca gtcaaattaa tcctgagtga 4201 aaaggacgtc tcaaagggtg ctggagttga tgaaatggac agagaagcca ggttggaagg 4261 agatgtttgg ctcaagagca tgatatatct tggaaaaagg taccatatag ttgaaccgct 4321 aggtcaagtg atcaagctca ctgagaatgc gatcaagtgc cacattcctg tttgttcaag 4381 ccagactcta ggtcctgagt tggacaacat tcaagcaaga gagttcaggg aattcaaggg 4441 caagaacggg tggtccaatc aattcaggga agaggctggt ccaaattgga agcaccctta 4501 cagagtgaat caggcaatga gttatgaggc tatatatcca aggcacagga tggatgatga 4561 tctaaccttt cttgctgcca tcaagaagag gcttcgtttc gataacgttg ctaataatta 4621 tgcaaagttt aaagcagcag agagtagagg caagtactta gcaaaagttt tcttgcgaca 4681 tgttccaata aagtgtggaa gagatcagag acttcttgat caatgcagac aagagtttga 4741 agagaccaaa ttgtcaaaaa gtgctgcaac cattggagcg cactcacaaa ggtctgactc 4801 tgattggcca ttggacaaaa tctttctttt catgaagtca caattatgca ccaagttcga 4861 gaagaggttc acagaagcca aagcgggtca gactttggcc tgctttccgc ataagatact 4921 tgttgagttc agcccatggt gcaggtacac agagaaagta ctcactgcaa accttccaga 4981 taattattac attcatcaaa ggaagaactt cagtgaactt gaagattttg caaagaggtt 5041 ctcaaatggc tcaatgtgtg tggaatcgga ttacacagct ttcgatgtct cgcaggatca 5101 taccatttta gcctttgaag tggagttgct caagcatttt ggttgggatg acaaggtatt 5161 acagagttac atcaaaatga aatgcaccct aggatgcaga ttgggaggtt ttgccattat 5221 gaggttcact ggagagttct caacattcct gttcaacaca ctcgcaaata tggtatttac 5281 cttttgcagg tatgaagttc cagacggcac tccaatttgc tttgcaggag atgatatgtg 5341 tgccctcagg aacttgagag aaattgacac ccatgaatgc attttgagta agttgagcct 5401 caaagcaaaa gtgaacagaa caaaggtacc gatgttttgt ggatggaggt tgtgtttcga 5461 cggacttata aaggaacctt gtttgattta cgaaagattg caagttgcaa ttgaaaatgg 5521 aaggttgatg gatgtgatag actcatattt tctggaattt tcattcgcct acaaattagg 5581 tgagaggctc tattcacatc ttgaaataga acaactgaat taccatcaag ttttgacaag 5641 attcttcata agaaacaagc atttgttaag gggtgattca aggcacaaca tctcagagct 5701 tgagtggctt tcagacgagg atagcgatga tgataagggg tcacaaattg aagatcgcag 5761 aaggggatat tccaattgct ggggtgaaaa gctccagaat ttattctgat gtgagtcctt 5821 tcaggaaggc ctctgacctt atgattcatt ggaatgaatt cgtattcaag gttatgccag 5881 aggatattgc aggtgatggt tttagattgg catccatacc tgttatacct tcctcagagg 5941 ttcaagcggt gctgagaaag agagagagta ccaactacgt gcattgggga gcactatcaa 6001 tatccattga cgcactgttc agaaagaatg ccggggtttc agggtggtgt tatgtgtacg 6061 acaacagatg ggaaactttt gagcaggcga tgctacaaaa gtttcggttc aacctggata 6121 gtggctcggc cacattggtg acctcaccga attttccagt ttcattggat gatcctggtt 6181 tgtccaattc gatcagtgta gcggtgatgt ttgagaatct gaacttcaag cttgaaagct 6241 accctataag tgttagggta gggaacatgt gtagattctt cgacagcttc ttgagttgcg 6301 tcaagaataa agtggactcc aactttttgc ttgaggccgc taatgcagat ccgcttggcg 6361 cgggtgcttt cgggtttgaa caggacgatc aggtctctga attgttcaat tatattcaga 6421 ctgtcccaac ccaggcaatt aaatccaggg agcatgaagt accgaggggt ttgttcggta 6481 tgatgggaaa aaagaaggtc aaatcttttg agtttgcctc tggttcaaga aatctgggaa 6541 gaagaaaacc gcaacgcgga agacctttgg aaagatctgc tagcctgaga gttgctcctg 6601 gatttaggtc ccaggatgag agagttgaac atcaaggatt atcgactgac tctgattttg 6661 aaaattttct gaggaaaggc aaaggaaaag ctggaactga atccattact tcagaagggt 6721 catccttcga taacatttct gcaagagagt ttcagtttgc tagacaagat cagaaggcga 6781 aggatggcgg cagtgctgaa cctccaatta aaagtggacg cagatctgaa agcgttcctg 6841 gccgcagaag gcagacccct tcatggaaag acaggggcaa ttctggaaca gacactggag 6901 gccatcttcg cgaacatagc gatacagggg acctcggaac aaacagagtt cctggacgtg 6961 ctggtggagg tgaaatccat ggaggatcag aaggtggtgg ggtcattcaa tctgaaggag 7021 gtagtcggtt tgatcaaaat attcaggact acatcttcgg acccgaatat aagcagcatg 7081 accttccgcc aagtgtgtga ggcatttgcc ccggaggcaa gaaatgggct cgtaaagcta 7141 aagtacaaag gggtcttcac aaacctcttt tctactacgc ctgaagtggg ggggaagtat 7201 ccggagctca tgtttgactt caataagggc ctaaatatgt tcataatgaa caaagcccag 7261 cagaaagtga taactaatat gaaccggcgt cttttacaga ctgaatttgc aaagagcgaa 7321 aatgaggcga aaatgtcgtc tgttacaact gatctttgcg tttagtctca taaggaagtt 7381 tggtttaata aataaagtta ataaatagtg tgcatttggt ttaatgtcaa ttgtgtgtat 7441 ttaattaacg tcaaactctt gaacccatga gagagtataa acagtcatgg tatctaattg 7501 gagtgtttag acttataata aatagcctgt agacttttaa atattttact ac //