LOCUS KU870524 7561 bp RNA linear VRL 29-AUG-2016 DEFINITION Apple chlorotic leaf spot virus isolate SY02, complete genome. ACCESSION KU870524 VERSION KU870524.1 KEYWORDS . SOURCE Apple chlorotic leaf spot virus ORGANISM Apple chlorotic leaf spot virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. REFERENCE 1 (bases 1 to 7561) AUTHORS Guo,W., Zheng,W., Wang,M., Li,X., Ma,Y. and Dai,H. TITLE Genome Sequences of Three Apple chlorotic leaf spot virus Isolates from Hawthorns in China JOURNAL PLoS ONE 11 (8), E0161099 (2016) PUBMED 27519059 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7561) AUTHORS Dai,H. and Guo,W. TITLE Direct Submission JOURNAL Submitted (03-MAR-2016) College of Horticulture, Shenyang Agricultural University, 120 Dongling Road, Shenyang, Liaoning 110866, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7561 /mol_type="genomic RNA" /country="China" /collection_date="09-Feb-2012" /host="Crataegus pinnatifida (hawthorn)" /db_xref="taxon:12175" /isolate="SY02" /organism="Apple chlorotic leaf spot virus" CDS 158..5791 /codon_start=1 /protein_id="AOF42977.1" /translation="MAFSYRTPQEELLSRLPQSRQEVISSYQYERIQKEEEKKVENFS FYLPDKTREWFTKSGVYLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSI KSNKMSKMERLGSNSVRTYDILNRLVTAKDKARYGPLATPERSPCPKKTNVFIHDEIH YWSRAQLESFLMVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGV RSESYTQPLENGYLLSSSSILVQNRKTGAELRYQVSLVYSLGSHHLFHIYPTEDLLKE EVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSVFKKIFIYLSSLKKPDVQSAVAKLRQL SDADISIESVFMVQEFASRVEKNGVGSWSCSFWECMKDWFFDKLPYREVIEKIGLADD FTRRLMKLKPLAFDIHTSDRPLTVRMVIDSIWEERVCAEDSIPNQIFYGRKEWMQHGV MPMVKRGFSKLVPGRNVLEPSYPQEIFSDMLSSTPLGKSYDSKLSSRSASSIVVMRSS RDYSEAAEFKSNCLSICAATDVSRAEKTAFEREFIERRRAISNKCLDFHIKKAKVKNP DELALKFSRINRAPSVKGRRKSKVRMAPSYLFCKIEGREATGNDKVAQNAQKDHEGTK EGEENPILKDGKGTKIEQISSSGKNEDKICFDLSHLVGKEKVCAAGLVKTVGNDFLYL EKQIGDLPLAHIGKRRAAYFCLDFPMVYFHDKVSYPTFEATGPIKQAIINARSKWEIE FNSALVQVYEDGYNLPLHRDDEECYDDDGILTINVCGDAKFHTTCHDEIVDLKQGNEI LMPAGFQRRNRHAVQVMSEGRTSVTIRVHRRDFSFESKVKFVKGRFDCLFASIAEVIH KKPEEVMAFVPHILDRCISNKGCSIDDARAICEAYEIKIECEGDCGLVECGTVGLSVG KLLLRGNHFRVASVRRSSIDSLANSSKEIKANGILDHVMFNFHDRLKEVEPDLNSTEI KVNLERAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRDFMKMVKNGDASEK SEMLEKIQGLNFFKKKIYGIFGFAGSGKSHAIQNLIHSEFKNSQGILVVCPRKFLARD WSEKGVNEKDIKTFESALKSDVKGRRLFILDEVSLLPKGFTDLLMLKLHMEGVLKAAT IVCIGDPLQAGYFCPKDDGYLAKDGEIMRLFKEGVKYKWYSYRINKFVAKKLGVSTMN DFTGIDQQSLIYKDMPSAQHFLKEGKNYPEVILVASMIEKELYSNYGNVMTFGESQGL TFNCGIIVLSEEAKLCSDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMC SGIGASKEFILNSSSVKLNLSEKDVAKGAGLDEMDREARLEGDVWLKSMIYLGKRYHL VEPLGQVIKLTDSAIKCHIPMCSYQTLMPELEKIQAREYREFKGKNGWSNQFREEAGP NWKFPYKVNQAMSFEAVYPRHRMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKY LAKVFLKHVPIKCGKDQRLLDQCRQEFEETKLSKSAATIGAHAQRSDSDWPLDKIFLF MKSQLCTKFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTTNLPENYYIHQRK NFSELEDFAKRFSNGSICVESDYTAFDVSQDHTILAFEVELLRHFGWDDKVLQSYIKM KCTLGCRLGGFAIMRFTGEFSTFLFNTLANMAFTFCRYEVPDGTPICFAGDDMCALRN LREVDTHEFILNKLSLKAKVNRTKVPMFCGWRLCNDGLIKEPCLIYERLQVAIENGRL MDVIDSYFLEFSFAYKLGERLYSHLEIEQLNYHQVLTRFFIRNKHLLRGDSRHNISEL EWLSDEDDNDDKGSQIEDRRRGYSNCWGEKLQNLF" /product="RNA polymerase" /note="ORF1" CDS 5703..7085 /codon_start=1 /protein_id="AOF42978.1" /translation="MTMMIRGHKLKIAEGDIPIAGVKSSRIYSDVSPFKRASDLMIHW NEFVFKVMPEDIAGDGFRLASIPVIPDSEVKAVLRKRENTNYIHWGALSISIDALFKK NAGVSGWCYVYDNRWETFEQARLQKFRFNLDSGSATLVTSPNFPVSLDDPGLSNSICV AVMFENLNFKLDSYPISVRVGTMCRFFDSFLSNVKNKSDSNFLLEASNADPLGASAFG FDADDQVSELFNCIQTVPTQAIKSREHEIPRGVFGMMGKKTVKSFEFASGSKDLNKMR PLRGRPLERSSSQRFAPGFKSQDKEVEHQGLATDLEFENFLRNKGRGKTGPKSITSEG SSVDNISAREFQFARQNQAKEDGSSSKSSVKGGRRSESVSGRRRQTPSWKDRGNPGTD TGVHLREHSDPGNVGADGVSGHDSGGQINGGSEGDKYLQSEVGGGPHQGLQDYIFGPE YKRDDLPPSL" /product="movement protein" /note="ORF2" CDS 6769..7350 /codon_start=1 /protein_id="AOF42979.1" /translation="MAAVLNLQLKVDADLKAFLAAEGRPLHGKTGAILEQTLESIFAN IAIQGTSEQTEFLDMIVEVKSMEDQKVISTYNLKSVVDLIKVFKTTSSDPNINGMTFR QVCEAFAPEARNGLVKLKYKGVFTNLFSTMPEVGGKYPELMFDFNKGLNMFIMNKAQQ KVITNMNRRLLQTEFAKSENEAKLSSVTTDLCI" /product="coat protein" /note="ORF3" ORIGIN 1 cgccgggata ctgaagaagt gtacactcat atcgtgagta aacaagtcga cgtaacgtct 61 cgactgtggc caagggtcag caccttcatg gtgctataaa atcaaataca atcacattgt 121 attccaaagc tttccgtgtg ggtacgtgaa agattaaatg gcattctcct accgaacgcc 181 acaagaggaa ctcctaagta gattgccaca atctcgacag gaggttatta gcagctacca 241 atacgagcgc attcaaaagg aggaagagaa gaaggtggaa aacttttctt tctacctgcc 301 agataaaact agggaatggt ttactaagtc tggtgtttac ttgtcacctt ttgcttatgt 361 aaatcattcg catcctggtt gtaaaactct ggagaaccac cttttattta atgttgtagc 421 tagttacatt agtaagtatc catatgtagc ttgtttaagt atcaaatcta ataaaatgag 481 caagatggag cgtttaggct ccaattctgt acgtacatat gacattttga ataggttagt 541 tactgctaag gacaaggcgc gatacggacc tctggctact cctgagaggt cgccgtgtcc 601 aaagaagacc aatgtcttta tacatgatga aattcactat tggtcaaggg cccaactcga 661 aagctttctc atggttcaca gaccaaagaa tctatgggcc actcttgttt tccctcctga 721 gatcttggca ggttataaat cttcagtttt gccttttcta tatcagtttg agatccacgg 781 taaggacctt gtgtatatgc ctgatggagt tcgttccgaa agttatacac aaccccttga 841 aaatgggtac ttgctgagtt ccagcagtat tttggtacaa aataggaaaa ctggggctga 901 attacgttac caggtaagtt tggtttactc tttgggctct catcatctgt ttcacattta 961 tccaactgag gatctgctca aagaggaagt cagaaggttt ggaccatatg atctatttga 1021 cgtggggagt ttgtttgtga aacctgtcag ggtgccaatc caagattttc ctctcagtgt 1081 tttcaagaag atatttatct acctaagttc tttgaagaaa cctgatgttc aatctgctgt 1141 tgccaaactg aggcaactat ctgatgcaga tatttccata gaatctgtat tcatggtcca 1201 agaattcgca agcagagtgg aaaaaaatgg tgtcggaagt tggtcatgct ctttctggga 1261 atgtatgaaa gactggtttt ttgacaaact tccttataga gaagtgattg aaaaaattgg 1321 cctggctgat gatttcacaa gacgcctgat gaagctcaaa cctttggctt ttgacattca 1381 cacatcagat agaccactca ctgttaggat ggtgatagac agcatatggg aggaaagagt 1441 ttgtgctgaa gacagcatac ccaatcaaat tttttacggg cgtaaagaat ggatgcaaca 1501 tggagtcatg cccatggtga aaagaggttt ctcaaaactt gtacctggtc gcaatgtact 1561 tgaaccctca tacccccaag agatattttc agacatgctg tcttcaactc ctctgggtaa 1621 atcttacgat tccaaattgt cttcaaggag tgctagttca attgtggtga tgcgttcatc 1681 acgcgattat tctgaagctg cggaatttaa atcaaactgc ttaagcatat gtgctgctac 1741 tgatgtgagt agagcagaga aaactgcatt tgagagggaa ttcattgaaa gaaggagagc 1801 catctccaac aaatgtctag attttcacat caagaaagca aaagtgaaaa atcctgatga 1861 acttgcactt aaattttcta ggataaaccg agctccatct gtcaaaggga ggaggaaaag 1921 caaggttcga atggcaccta gttacctgtt ttgcaagatc gaagggaggg aggccactgg 1981 gaatgataag gtcgcccaga atgcacagaa ggaccatgaa ggcactaaag aaggagagga 2041 aaatcctatt ttgaaagatg gaaaggggac caagatcgag caaatctcta gctctgggaa 2101 aaatgaagat aaaatttgct ttgatttgtc gcatttggtt ggaaaagaaa aagtatgcgc 2161 agctggactt gtcaagactg tgggcaatga ctttctttat ctggagaaac aaattgggga 2221 tcttcccctt gcgcacatag ggaaaagaag agctgcttac ttttgccttg acttccccat 2281 ggtgtacttt catgataagg tatcttaccc aacttttgag gcaacagggc caattaagca 2341 ggcgataatc aatgccagaa gcaaatggga aattgaattc aacagtgccc ttgtccaagt 2401 ttatgaagat ggctacaatc ttcctctgca tagagatgat gaggaatgtt atgatgatga 2461 tggtattcta accatcaacg tctgtggaga tgcaaagttt cataccactt gtcatgatga 2521 aattgtggat ttgaagcaag gaaatgaaat tttgatgccg gctggttttc agaggaggaa 2581 caggcatgca gttcaagtaa tgtctgaagg tagaacaagc gtaaccatca gagtacacag 2641 gcgtgatttc agctttgaat caaaagtcaa gttcgtgaaa gggagatttg actgtctctt 2701 tgcctcaata gcagaagtga tccataagaa acctgaggag gtaatggctt ttgtacctca 2761 cattttggac agatgcatta gcaacaaagg ttgctcaatt gatgatgcaa gagctatatg 2821 tgaggcctat gagatcaaga ttgaatgtga aggggattgt ggccttgtgg agtgcggaac 2881 cgttggatta tccgtgggaa aactcttgct gagaggaaat cattttcggg ttgcgtctgt 2941 gagaagatca tccattgatt ctcttgccaa ctctagtaaa gagatcaagg ctaacggaat 3001 tttagatcat gttatgttca atttccacga tagactcaag gaggttgaac ctgacctaaa 3061 ttccactgaa atcaaggtta atttggaacg tgctggtaag ttgctcaaga gtttgatgga 3121 tggtatgaca gggatagtgt cgcacaactc aacccatgaa ggatggagaa tgatcaaagg 3181 gataaatagc acctctgaga tgagagactt catgaaaatg gtaaaaaatg gtgatgcaag 3241 cgagaaaagt gaaatgctcg agaagattca gggattaaat ttcttcaaaa agaaaatcta 3301 tggaatcttt ggctttgcag gatcggggaa aagccacgca attcagaact tgattcactc 3361 tgaattcaaa aattctcaag gtattttggt tgtgtgccca agaaagtttt tggccagaga 3421 ttggagtgaa aagggtgtga atgaaaagga cattaaaacg tttgagagtg ccctcaaaag 3481 cgacgttaaa gggagaaggc tgttcatact tgatgaagtg agtttgctgc caaaagggtt 3541 cactgatctt ttgatgctca aattgcacat ggaaggggtt ctcaaggctg caacgattgt 3601 gtgcataggc gacccattgc aggctggata cttctgcccc aaagatgatg gatatttagc 3661 aaaagatggg gagataatga gacttttcaa agaaggggtt aaatacaaat ggtacagcta 3721 cagaatcaac aaatttgtag caaaaaagtt gggagtaagt accatgaacg acttcacagg 3781 catagatcaa cagagcttga tttataaaga catgccatct gcacagcatt tcctgaagga 3841 agggaaaaat taccctgagg taatcttggt cgccagtatg attgagaagg aactctattc 3901 caactacgga aacgtgatga cttttggaga atcacaaggt ttaactttca actgtggtat 3961 cattgttcta tccgaagagg caaaactgtg ttctgatgcc catattatgg ttgccataac 4021 aagattcagg agaggttttt gctttgctct gggaagcaaa ggatcaaagg aagattacat 4081 gagatcaatg aaaagcggcc ttttgcaaag gatgtgttcc ggaattgggg cctcgaaaga 4141 attcattctc aactcctcat cagtaaaact caatttgagc gaaaaagatg ttgcaaaagg 4201 ggccgggtta gatgagatgg atagggaggc tagattggaa ggggatgttt ggttgaaaag 4261 catgatatat ttgggtaaaa ggtatcacct ggttgaacca ttgggtcaag tcatcaaatt 4321 aacagatagt gcaatcaaat gtcacattcc aatgtgctct taccagactt tgatgccaga 4381 gttggaaaag attcaagcaa gagagtacag agaattcaaa ggaaagaatg gttggtcaaa 4441 tcaatttagg gaggaggcag gtccgaattg gaagttccct tacaaggtta atcaggccat 4501 gagctttgaa gcagtgtacc caagacacag aatggatgat gatctcacct ttttggctgc 4561 gatcaagaaa agattgagat ttgacaatgt tgccaataat tatgcaaaat tcaaggcagc 4621 tgagagcagg ggcaaatatt tggcaaaggt tttccttaaa catgtcccaa tcaagtgtgg 4681 taaggatcaa aggttgttgg atcaatgcag acaggagttt gaagaaacca agctttcgaa 4741 gagtgcggcc acaataggtg cacatgctca aagatcagac tcagactggc cgttggacaa 4801 gatatttctc ttcatgaaat ctcagttgtg cacaaaattt gaaaagagat ttacagaggc 4861 taaggctggg caaacactcg catgttttcc acacaaaatt ttggttgaat ttagtccctg 4921 gtgcaggtac acagaaaagg tgcttaccac aaatctacct gaaaattatt acattcatca 4981 aaggaaaaat ttcagtgaac tggaggattt tgctaaaagg ttttcgaacg gttccatttg 5041 cgttgaatct gattacaccg cttttgatgt gtctcaagac catacaattc tcgcatttga 5101 agtcgagctt ctgagacatt tcggatggga cgacaaagtt ctccagagtt acatcaagat 5161 gaaatgtacc ttgggttgta gattgggtgg ttttgctata atgaggttca caggcgaatt 5221 ctccactttt ttgttcaaca ctttggcgaa catggcgttc acattttgca gatatgaagt 5281 ccctgatggg acaccaatat gttttgctgg ggatgacatg tgtgccctca ggaatttgag 5341 ggaggtggat actcatgaat ttatcttgaa taaattgagc ctcaaggcaa aagtgaatag 5401 aacaaaggta cctatgttct gtggatggag gctttgcaat gatgggctta tcaaagagcc 5461 atgcttgatc tatgagagat tgcaagtggc tatagaaaat ggtagattga tggatgtgat 5521 agattcttac tttctggaat tttcatttgc ctacaagtta ggtgagaggc tctattcaca 5581 tcttgaaatc gaacagttga attatcatca agttttgaca aggtttttca tcagaaacaa 5641 gcatttgctg agaggtgatt ctaggcacaa tatttctgaa ttggagtggc tttctgacga 5701 agatgacaat gatgataagg ggtcacaaat tgaagatcgc agaaggggat attccaattg 5761 ctggggtgaa aagctccaga atttattctg acgtgagtcc cttcaaaagg gcctctgacc 5821 tcatgattca ctggaatgaa tttgtattta aggtcatgcc ggaggacatt gcaggtgatg 5881 gcttcaggtt ggcgtcaatc ccagtcatac ccgattcgga agtgaaagcg gttctcagaa 5941 agagggagaa caccaattac atccattggg gagctctatc aatatcaata gatgctttgt 6001 tcaagaaaaa cgctggagtt tcaggatggt gttacgtata tgacaacagg tgggaaactt 6061 ttgaacaagc aaggctgcag aagtttcggt ttaacttgga cagtggatct gctacgttgg 6121 tgacttcacc aaattttcca gtatctcttg atgacccagg gctctcaaac tctatttgcg 6181 ttgcggtcat gttcgagaac ctgaatttca agttggatag ttaccccatt agtgtccgag 6241 ttgggacaat gtgcagattc tttgacagct tcctgagcaa tgttaagaat aagagtgatt 6301 ccaatttcct gcttgaagct tcgaatgctg atccgctagg ggccagtgcc tttggttttg 6361 atgctgatga tcaggttagt gagttgttca attgcatcca aaccgtgcca actcaagcaa 6421 tcaaatcaag ggagcacgag attccgagag gggtgtttgg aatgatgggg aaaaagacag 6481 tgaagtcttt tgaatttgca tccggatcca aggacctcaa caaaatgagg ccactgagag 6541 gaagaccatt ggaaagatct tcgagccaaa ggtttgctcc tggatttaag tcccaggata 6601 aggaagttga acatcaaggt ttagcaactg atttggaatt tgaaaatttc ttgagaaata 6661 aaggtagagg caaaactgga ccgaaatcca ttacttcaga agggtcatcc gtggataaca 6721 tttctgcaag agaatttcag tttgctagac aaaatcaggc gaaggaggat ggcagcagtt 6781 ctaaatcttc agttaaaggt ggacgcagat ctgaaagcgt ttctggccgc agaaggcaga 6841 ccccttcatg gaaagacagg ggcaatcctg gaacagacac tggagtccat cttcgcgaac 6901 atagcgatcc agggaacgtc ggagcagacg gagtttctgg acatgatagt ggaggtcaaa 6961 tcaatggagg atcagaaggt gataagtact tacaatctga agtcggtggt ggacctcatc 7021 aaggtcttca agactacatc ttcggacccg aatataaacg ggatgacctt ccgccaagtt 7081 tgtgaggctt ttgcccctga ggcgcgaaat gggcttgtca agctaaagta caaaggggtt 7141 ttcacgaacc tcttctcaac catgcctgag gtgggtggca agtacccaga gctcatgttc 7201 gactttaaca aaggtttaaa tatgtttata atgaacaaag ctcaacaaaa agtaattact 7261 aatatgaacc ggcgtctttt gcaaactgaa tttgcaaaaa gtgaaaacga ggcgaaactt 7321 tcgtctgtta caactgatct ttgcatctaa tttgctaaag aggtttggtt taataaataa 7381 attaaataaa tagtgtgtgt atttaacgtg tggttgtatt tgcattattt atgtcaataa 7441 attgaatgtg ttggtacatt caaactctgg aacccatgaa agagtataaa gagtcatggt 7501 attaaattgg agtgtttaga cttataataa atagcctgta gacttttaaa tattttacta 7561 c //