LOCUS KU870525 7545 bp RNA linear VRL 29-AUG-2016 DEFINITION Apple chlorotic leaf spot virus isolate SY03, complete genome. ACCESSION KU870525 VERSION KU870525.1 KEYWORDS . SOURCE Apple chlorotic leaf spot virus ORGANISM Apple chlorotic leaf spot virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. REFERENCE 1 (bases 1 to 7545) AUTHORS Guo,W., Zheng,W., Wang,M., Li,X., Ma,Y. and Dai,H. TITLE Genome Sequences of Three Apple chlorotic leaf spot virus Isolates from Hawthorns in China JOURNAL PLoS ONE 11 (8), E0161099 (2016) PUBMED 27519059 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7545) AUTHORS Dai,H. and Guo,W. TITLE Direct Submission JOURNAL Submitted (03-MAR-2016) College of Horticulture, Shenyang Agricultural University, 120 Dongling Road, Shenyang, Liaoning 110866, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7545 /mol_type="genomic RNA" /country="China" /collection_date="09-Feb-2012" /host="Crataegus pinnatifida (hawthorn)" /db_xref="taxon:12175" /isolate="SY03" /organism="Apple chlorotic leaf spot virus" CDS 140..5773 /codon_start=1 /protein_id="AOF42980.1" /translation="MAFSYRTPQEELLSRLPQSRQEVISGYQFERIQKEEEKKVENFS FYLPERTREWFTKSGVYLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSI KSNKMSKMERLGSNSVRTYDILNRLVTSKDKSRYGPLATPERSPCPKKTNIFIHDEIH YWSRTQLESFLAVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGV RSESYTQPLENGYLLSSSSILVQNRKTGAELRYQISLVYSLGSHHLFHIFPTEDLLKE EVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSVFKKIFIYLSSLKKPDVQSAVAKLRQL SDADISIESIFMVQEFASRIEKNGVGNWSCSFWECMKDWFFDKLPYREVIEKIGLADD FTRRLMKLKPLAFDIHTSDRPLTVRMVIDSIWEERVCVEDSIPNQIFYGRKEWIQHGV MPMMKRGLSKLVPGRDILEPSYPQEIFSDMLSSTPLGKSYDSRLSSRNASPIVMMRSS RCYSEAAEFRSNCLSICAATDTNRADKTEFEREFIERRRKISNKCLDFHMKKAKVKNL EELALKLSKVNQVSHIRKKVKNRTRLVPSYLACAPNNKEIKGNDKVAQIVHEKREEKI REENAKVVLEEKELEVERDSSSMNKAEEIHFSLSHLVGKEKVCAAGLVRTVGNDFLYL EKQIEDLPLARIGKRRAAYFCLDFPMVYFHDKVSYPTFEATGPIKQAIIGAKDKWGID FNSALVQVYEDGCSLPLHRDDEECYDDDGILTINVCGDAKFHTTCHDEIIDLKQGNEI LMPAGFQKRNKHAVQVMSEGRTSVTIRVHKRDFSFESKVKFVKGRLDCLFSSVAEVIH KKPEEVMAFVPHILDRCISNKGCSIDDARAICEAYEIKLECEGDCGLVECGTVGLSVG RLLLRGNHFRVASVRRSSIDSLANSSKEMKANGVLDHVMFSFHERLKEVEPDLNSVEI KVNLERAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMKMIKGEVSDEK CEMLEKVQGLNFFKKKIYGIFGFAGSGKSHAIQNLIYSEFKNSQGVLVVCPRKFLAKD WSEKGVNEKDIKTFESALKSDIKGKRLFILDEVSLLPKGFTDLLMLKLHMDGVLKTST IVCIGDPLQAGYFCPKDDGYLAKDGEIMRLFKEGIKYKWYSYRINKFVAKKLGISTMN DFTGIDQQSLIYKDMPSAHHFMKEGKNHPEVILVASMIEKELYSNYGNVMTFGESQGL TFNCGVIVLSEEAKLCSDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMC SGIGASREFILSSSSVKLILSEKDIAKGAGLDEMDREARLEGDVWLKSMIYLGKRYHL VEPLGQVIKLTDSAIKCHIPMCSHQTLMPELERIQAREYREFKGKNGWSNQFREEAGP NWKFPYKVNQAMSFEAVYPRHRMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKY LAKVFLKHVPIKCGRDQMLLDQCRQEFEETKLSKSAATIGAHAQRSDSDWPLDKIFLF MKSQLCTKFEKRFTEAKAGQTLACFPHRILVEFSPWCRYTEKVLTANLPDNYYIHQRK NFCELEDFAKRFSNGSTCVESDYTAFDVSQDHTILAFEVELLRHFGWDDSILQSYIRM KCTLGCRLGGFAIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRN LREIDTHEFILNKLSLKAKVNRTKVPMFCGWRLCYDGLIKEPCLIYERLQVAIENGRL MDVIDSYFLEFSFAYKLGERLYSHLEIEQLNYHQVLTRFFIRNKHLLRGDSRHNISEL EWLSDEDGDDDKGSQIEDRRRGYSNCWGEKLQNLF" /product="RNA polymerase" /note="ORF1" CDS 5685..7067 /codon_start=1 /protein_id="AOF42981.1" /translation="MAMMIRGHKLKIAEGDIPIAGVKSSRIYSDVSPFKRASDLMIHW NEFVFKVMPEDIAGDGFRLASIPVIPDSEVKAVLRKRENTNYIHWGALSISIDALFKK NAGVSGWCYVYDNRWETFEQARLQKFRFNLDSGSATLVTSPNFPVSLDDPGLSNSICV AVMFENLNFKLDSYPISVRVGTMCRFFDSFLSNVKNKSDSNFLLEASNADPLGASAFG FDADDQVSELFNYIQTVPTQAIKSREHEIPRGMFGMMGKKTVKSFEFASGSRDFSKMK PQRGRPIGRSSNQRYAPGFKSQDERVEHQGLATDLEFENFLKSKEKGKAGPKSIASEG SSVDNISAREFQFARQNQTKEDGGSSKSSVKGGRRSESVPGRRRQTPSWKDRGNPGTD TGVHLREHSNPGDLGTDGVPGRDGGGEVDGGSEGDKFLQPEIGSGSYQGIQDYIFGPE HKRDDFPPSL" /product="movement protein" /note="ORF2" CDS 6751..7332 /codon_start=1 /protein_id="AOF42982.1" /translation="MAAVLNLQLKVDADLKAFLAAEGRPLHGKTGAILEQTLESIFAN IAIQGTSEQTEFLDVMVEVKSMEDQKVISSYNLKSVVDLIKAFKTTSSDPNINGMTFR QVCEAFAPEARNGLVKLKYKGVFTNLFTTMPEVGSKYPELMFDFNKGLNMFIMNKAQQ KVITNMNRRLLQTEFAKSENEAKLSSVTTDLCV" /product="coat protein" /note="ORF3" ORIGIN 1 gtgttcactc atatcgtgag tagacaagtc gacgtaacgt ctcgactgtg gccaagggtc 61 agcatcttaa cgatgctata aaatcaaata caataacatt gtattccaaa gctttccgtg 121 cgatcacgtg agagatcaaa tggccttctc ctacagaacg ccacaagagg agctcctcag 181 tagattacca caatctcgac aggaagtcat cagcggctac caatttgagc gcattcaaaa 241 ggaagaagag aagaaggtgg aaaacttctc tttttaccta ccggagagaa ctagggaatg 301 gttcactaag tctggtgtct atctgtcgcc tttcgcttat gtgaatcact ctcaccctgg 361 ttgcaaaact ctggagaacc accttttatt taatgttgta gctagctaca ttagtaagta 421 cccatatgta gcttgtttga gtattaaatc taataaaatg agcaaaatgg aacgcttagg 481 ttccaactct gttcgcactt atgatatttt gaatagatta gtcacctcca aagacaaatc 541 acggtacgga cctttggcca ctcctgagag gtcaccctgc ccaaagaaaa ccaacatttt 601 catacatgac gaaattcatt attggtccag aactcaactt gagagtttcc ttgctgttca 661 tagaccaaag aatttgtggg ccactttagt ctttccccct gagattttgg caggttacaa 721 atcctctgtg cttccttttc tatatcaatt tgagattcat ggcaaagatc ttgtatatat 781 gcccgatgga gttcggtctg agagctacac acagcctctg gaaaacggat atttgctgag 841 ctccagcagc attctggtgc aaaataggaa gacgggagct gaactgcgtt atcaaattag 901 cttggtctac tcactgggtt ctcaccacct ttttcacatt ttcccaactg aggatctact 961 caaggaggag gtcaggaggt ttgggccata tgatcttttc gatgtcggga gtttgtttgt 1021 aaaacctgtc agggtgccta ttcaggattt tccattgagt gttttcaaga agatatttat 1081 ttatttgagt tccttgaaaa aacctgatgt tcagtccgcg gtggccaagt tacgtcagtt 1141 gtctgacgca gatatttcaa tagaatctat ttttatggtc caagagtttg ccagcaggat 1201 cgagaaaaat ggagttggga actggtcatg ctccttctgg gagtgtatga aggattggtt 1261 ttttgacaag ctcccttata gagaggtgat cgaaaaaatt ggtctagcgg atgatttcac 1321 aagacgtttg atgaaactca aaccactagc ttttgatata cacacatcag acagaccatt 1381 gacagttaga atggtcattg acagtatatg ggaggaaaga gtctgtgtgg aggacagtat 1441 cccaaatcaa atcttctatg ggcgcaaaga gtggatacag catggggtca tgcccatgat 1501 gaagaggggt ctgtcgaagc ttgtgccggg gcgtgatata cttgagcctt cataccctca 1561 agaaattttt tcagacatgc tctcttcaac tcctttgggt aaatcttatg actcaagatt 1621 gagttcaaga aatgcaagcc caattgtgat gatgcgctct tctcgatgtt attctgaggc 1681 agcagagttc agatcaaact gcctaagtat atgtgctgca actgacacaa acagggcaga 1741 caagactgaa tttgaaaggg agttcatcga gagaagaaga aagatctcca acaaatgctt 1801 ggactttcac atgaagaaag caaaagttaa aaatctagaa gagcttgcgc tcaaactttc 1861 aaaggtgaac caggtttctc acatcagaaa aaaagtaaag aacagaactc gtttagttcc 1921 tagctacttg gcttgcgcac ccaacaataa ggaaatcaaa gggaatgata aggtcgccca 1981 aatagtgcac gagaagagag aagagaagat tagagaagaa aatgcaaagg tcgttcttga 2041 ggaaaaggaa ctcgaggttg aacgggactc tagttcaatg aataaggcag aggagatcca 2101 cttttcattg tctcatctag ttgggaagga aaaggtttgc gcggccgggc ttgtgagaac 2161 tgttggtaat gactttcttt acctggaaaa acaaattgag gacctcccgc ttgcacgcat 2221 aggaaagagg agagcagcct acttctgtct ggatttcccc atggtgtact ttcatgacaa 2281 ggtgtcttat ccaacttttg aagccacagg gcccatcaaa caagcaataa ttggtgcaaa 2341 agacaaatgg ggaattgatt tcaacagtgc tcttgttcag gtatatgagg atgggtgcag 2401 tcttcctttg catagagatg acgaggagtg ttatgatgat gatggcattc ttacaatcaa 2461 tgtttgcgga gacgcaaagt ttcacactac ttgtcacgat gaaatcatcg acctgaagca 2521 agggaatgaa attttaatgc cagctggttt ccaaaaaaga aacaagcatg cagttcaggt 2581 gatgtcggag gggaggacaa gcgtgacgat cagggtacac aaacgtgact tcagctttga 2641 gtccaaggtc aaattcgtta aaggaagact ggactgcctt ttttcttcgg tggcagaagt 2701 gattcacaag aaacctgagg aggtgatggc ctttgttccc cacattttgg ataggtgcat 2761 aagcaacaaa ggttgttcaa ttgacgatgc aagggcaata tgcgaggcct atgaaattaa 2821 gcttgaatgt gaaggggact gtggtctagt ggaatgtgga actgttggac tttctgttgg 2881 aagacttttg ttgagaggga accattttcg ggttgcgtca gtaaggaggt catcgattga 2941 ttctcttgcg aactcaagca aagaaatgaa ggcaaatggg gttctcgacc atgttatgtt 3001 tagcttccat gagagactca aagaggttga acctgatttg aattcagtcg agattaaggt 3061 taatctggag cgtgctggca aactgctcaa gagtctgatg gatggcatga cagggatagt 3121 gtcacacaat tctacgcatg aggggtggag gatgatcaaa ggcataaata gtacctctga 3181 gatgagaagc tttatgaaga tgatcaaagg tgaagtttct gacgaaaaat gtgaaatgct 3241 ggaaaaggtt caggggctga atttcttcaa gaaaaagatc tatggaattt ttggtttcgc 3301 gggttctggc aaaagtcacg caattcagaa tttgatttac tctgaattca agaattcgca 3361 aggggtcttg gttgtgtgtc cgagaaagtt tttggccaaa gactggagcg agaaaggtgt 3421 aaatgagaag gacatcaaga catttgaaag tgctctcaaa agtgacatta aaggaaagag 3481 gctttttata cttgatgaag ttagcctatt gccaaagggt tttactgatc ttctgatgct 3541 taagcttcac atggatggag tgcttaagac ttcaactatc gtctgcatag gagatccatt 3601 gcaagctgga tacttctgcc caaaagatga tggatatttg gcaaaggatg gcgaaataat 3661 gaggcttttc aaggaaggga tcaagtacaa gtggtacagc tacagaatca ataaattcgt 3721 ggcaaagaag ttgggcataa gcacaatgaa tgatttcacg ggcatagatc agcaaagtct 3781 aatttacaag gatatgccat cagcacatca tttcatgaag gaggggaaga atcaccctga 3841 agtgattctg gttgccagca tgatagagaa agaactctac tccaactatg gaaatgtaat 3901 gaccttcgga gagtcccaag gcctaacttt caattgcggt gtcattgtct tgtctgagga 3961 ggccaaattg tgctccgatg ctcacatcat ggttgccata acgagattca ggagaggttt 4021 ctgctttgcc cttggaagca aaggatcaaa agaggattac atgcggtcga tgaagagtgg 4081 tctcctacaa aggatgtgtt ccggaattgg ggcttcaaga gagttcattc taagttcttc 4141 atctgttaaa ctcattctaa gtgagaaaga tattgccaaa ggggctggat tggacgaaat 4201 ggacagagag gccaggttgg aaggggatgt ttggctgaaa agcatgatat accttggcaa 4261 aaggtaccat ttggttgaac ctttggggca agtgatcaag ctgacagaca gtgcaattaa 4321 atgtcatatt ccaatgtgtt ctcatcaaac tttgatgcca gaactggaaa gaatccaggc 4381 aagggagtat agggaattca aaggaaaaaa tggttggtca aaccaattca gagaggaggc 4441 aggcccaaac tggaaattcc cttacaaagt taaccaagca atgagttttg aagcagtgta 4501 cccaagacat agaatggatg atgacctcac tttccttgca gctatcaaga agaggttgcg 4561 gtttgataat gtcgccaaca actacgcaaa atttaaggca gcggaaagca gaggcaagta 4621 cttggcaaaa gtcttcctta agcatgtccc gatcaaatgc gggagggatc aaatgttatt 4681 ggaccagtgc aggcaggagt ttgaggaaac caagctttca aagagtgcag ccacgatagg 4741 tgcacatgct cagagatcgg actcagattg gccattggac aaaatattcc ttttcatgaa 4801 atcccagttg tgtacaaaat tcgagaagag gttcacagag gcaaaggctg ggcaaacact 4861 tgcatgtttc ccacatagaa ttctggttga gttcagccca tggtgcagat acacagaaaa 4921 ggtcctcaca gcaaatttgc ctgacaatta ttatattcat cagaggaaaa atttctgtga 4981 attagaggat ttcgcaaaaa ggttttccaa tggctccaca tgtgttgaat ctgattacac 5041 agcttttgat gtttcacagg atcacacaat acttgcattt gaggttgagc ttctgaggca 5101 ctttgggtgg gatgacagta ttcttcagag ttacatcagg atgaaatgta cactgggttg 5161 cagattgggt ggcttcgcga taatgagatt cacaggggaa ttttccacat ttttgttcaa 5221 cactttggca aatatggtgt tcaccttctg caggtacgag gttccagatg gcacgccaat 5281 atgcttcgcg ggtgatgata tgtgtgcgct gagaaatcta agggaaattg acacccatga 5341 gttcattttg aacaaactga gcctcaaagc taaagtgaac agaacaaagg ttccaatgtt 5401 ttgcgggtgg aggctttgct atgacggtct aattaaagag ccatgcttga tctatgagag 5461 attgcaagtg gccattgaaa acggcagatt gatggatgtg atagattcct atttcttgga 5521 attttcattt gcctacaaat taggtgagag gctctattca catcttgaaa tcgaacagtt 5581 aaattatcat caggttttga ccagattttt catcagaaac aagcacttgt tgagaggtga 5641 ctcaagacac aatatttctg aattagagtg gctttctgac gaagatggcg atgatgataa 5701 ggggtcacaa attgaagatc gcagaagggg atattccaat tgctggggtg aaaagctcca 5761 gaatttattc tgatgtaagt cctttcaaaa gagcctccga cctcatgatc cattggaatg 5821 agttcgtgtt taaggtcatg ccggaggaca tagcgggcga tggcttcaga ctggcctcaa 5881 tacctgttat accagattct gaagtgaaag cagtgctcag gaaaagagag aatactaact 5941 atattcattg gggggctctc tcaatatcaa tagatgcgtt gttcaagaaa aatgctggtg 6001 tttctggatg gtgctatgta tatgacaatc ggtgggaaac ttttgagcag gccaggctgc 6061 aaaaattccg gttcaatttg gatagtggct cagccacttt ggtcacttct ccaaactttc 6121 ctgtctctct cgatgaccct ggactttcaa attctatttg cgttgcggtc atgtttgaga 6181 atttgaactt caaattagac agctatccca ttagtgtcag ggtaggaacc atgtgcaggt 6241 tctttgacag ctttctgagt aatgttaaaa acaagagcga ttctaatttt cttctagaag 6301 cttcaaatgc agacccatta ggtgcaagcg cttttgggtt tgacgctgac gatcaagtca 6361 gtgagctgtt taattacatt cagacagttc ctacccaggc aatcaaatca agagagcatg 6421 agatcccgag gggaatgttt ggaatgatgg ggaagaaaac cgtgaaatct ttcgaattcg 6481 cttctggatc gagggatttc agtaaaatga agccgcagag aggaagacca ataggaagat 6541 cctcaaacca aagatatgct cctggattta agtcccagga tgagagagtt gaacatcaag 6601 gtttagcaac tgatttggaa tttgagaact ttctgaaaag caaagagaaa gggaaagctg 6661 gaccgaagtc cattgcttca gaagggtcat ccgtggataa catctctgca agagaatttc 6721 agtttgctag acaaaatcag acgaaggagg atggcggcag ttctaaatct tcagttaaag 6781 gtggacgcag atctgaaagc gttcctggcc gcagaaggca gaccccttca tggaaagaca 6841 ggggcaatcc tggaacagac actggagtcc atcttcgcga acatagcaat ccaggggacc 6901 tcggaacaga cggagttcct ggacgtgatg gtggaggtga agtcgatgga ggatcagaag 6961 gtgataagtt cctacaacct gaaatcggta gtggatctta tcaaggcatt caagactaca 7021 tcttcggacc cgaacataaa cgggatgact ttccgccaag tttgtgaggc ctttgcccct 7081 gaggcaagga acgggttggt caagctaaag tataaagggg ttttcacgaa cctctttacg 7141 accatgcctg aagtgggtag taaataccca gagcttatgt tcgacttcaa caagggtctg 7201 aatatgttta taatgaacaa agctcagcaa aaagtaataa ctaatatgaa ccggcgtctt 7261 ttgcaaactg aatttgcaaa aagtgaaaac gaggcgaaac tttcgtctgt tacgacagat 7321 ctttgcgttt aatttgctaa agaggtttgg tttaataaat aggataaata aacagtgtgt 7381 atttaatgtg tgattatgtt cgcagttatt cacatcaata ataaattgtg tgcgttaatg 7441 cactcaaact ctggaaccca tgagagagta taaagagtca tggtattgat ttggagtgtt 7501 tagacttata ataaatagcc tgtagacttt taaatatttt actac //