LOCUS KC935955 7528 bp RNA linear VRL 23-SEP-2013 DEFINITION Apple chlorotic leaf spot virus isolate YH, parital genome. ACCESSION KC935955 VERSION KC935955.1 KEYWORDS . SOURCE Apple chlorotic leaf spot virus ORGANISM Apple chlorotic leaf spot virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. REFERENCE 1 (bases 1 to 7528) AUTHORS Zhu,H., Wang,G., Hu,H., Tian,R. and Hong,N. TITLE The genome sequences of three isolates of Apple chlorotic leaf spot virus from pear (Pyrus sp.) in China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7528) AUTHORS Zhu,H., Wang,G., Hu,H., Tian,R. and Hong,N. TITLE Direct Submission JOURNAL Submitted (19-APR-2013) College of Plant Science and Technology, Huazhong Agricultural University, ShiZiShan No 1, Wuhan, Hubei 430070, China FEATURES Location/Qualifiers source 1..7528 /mol_type="genomic RNA" /db_xref="taxon:12175" /country="China" /isolate="YH" /organism="Apple chlorotic leaf spot virus" /host="Pyrus pyrifolia cv Yuanhuang (pear)" CDS 120..5756 /codon_start=1 /protein_id="AGW07339.1" /translation="MAFSYRTPQEELLSRLPQSQQEVISGYQYERIQKEEEKKVENFS FYLPERTREWFTKSGVYLSPFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSI KSNKMSKMERLGSNSVRTYDILNRLVTSKDKARYGPLATPERSPCPKKTNIFIHDEIH YWSRTQLESFLAVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHDKDLVYMPDGV RSESYTQPLENGYLLSSSSILVQNKKTGAELRYQVSLVYSLGSHHLFHIYPTEDLLKE EVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSVFKKIFIYLSSLKKPDVQSAVAKLRQL SDADISIESVFMVQEFASRIERNGVGSWSCSFWECMKDWFFDKLPYREVIEKIGLADD FTRRLMKLKPLAFDIHTSDRPLTVRMVIDSIWEERVCMGDSIPNQIFYGRKEWIQHGV MPMIKRGLSKLVPGRDILEPSYPQEIFSDILSSTPLGKSYDSKLSSRNASPMVIMRSS RCYSEAAEFKSNCLSICAATDANRADKTAFEMEFIKRRKMISDKCLEFHMKKVKVKNP EELALKLSKMNQVPHIRKKIKKNRIRLMPSYLTCTSDDRGIKGNDKVAQMVHKGKEEE VERRNVEVVIEKEKTKIEQNSGSRNEAEEIHFSLTHLVGREKICAAGLVKTVGNDFLY LGRQIEDLPLVRIGKRRAAYFCLDFPMVYFHDKVSYPTFEATGSIKQAIISARDKWGI DFNSALVQVYEDGCSLPLHRDDEECYDDDGILTINVCGDAKFHTTCHDEIIDLKQGNE ILMPAGFQKRNKHAVQVTSEGRTSVTIRVHKRDFSFESKVKFVKGKLDCLFSAVAEVI HKKPEEVMAFVPHILDRCISNRGCSIDDARAICEAYEIKLECEGDCGLVECGTVGLSV GRLLLRGNHFRVASVRRSSIDSLANSSKEVKANGVLDHVMFNFHERLKEVEPDLNSAE IKVNLERAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRNFMKMIKGDVPDE KCEMLEKVQELNFFKRKIYGIFGFAGSGKSHAIQNLIYSEFKNSQGVLVVCPRKFLAK DWSEKGVNDKDIKTFESALKSDIRGKRLFILDEVSLLPRGFTDLLMLKLHMDGVLKTS TIVCIGDPLQAGYFCPKDDGYLARDGEIMRLFKEGIRYKWYSYRINKFMAKKLSISTM NDFTGIDQQSLVYKDMPSAHHFMKEGNNHPEVILVASTIEKELYSNYGNVMTFGESQG LTFNCGVIVLSEEAKLCSDAHIMVAITRFRRGFCXALGSKGSKEDYMRSMKSGLLQRM CSGIGASREFILSSSSVKLILSEKDIAKGAGLDEMDREARLEGDVWLKSMIYLGKRYH LVEPLGQVIKLTDGAIKCHIPVCSPQTLMPELEKIQAREYREFKGRNGWSNQFREEAG PNWKFPYKVNQAMSFEAVYPRHRMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGK YLAKIFLKHVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHAQRSDSDWPLDKIFL FMKSQLCTKFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTASLPDNYYIHQR KNFCELEDFAKRFSNGSTCVESDYTAFDVSQDHTILAFEVELLRHFGWDDSILQSYIR MKCTLGCRLGGFAIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALR NLREINTHELILNKLSLKAKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGR LMDVIDSYFLEFSFAYKLGERLYSHLEIEQLNYHQVLTRFFIRNKHLLRGDSRHNISE LEWLSDEDGDDDKGSQIEDRRRGYSNCWGEKLQNLF" /product="RNA polymerase" /note="POL" CDS 5668..7050 /codon_start=1 /protein_id="AGW07340.1" /translation="MAMMIRGHKLKIAEGDIPIAGVKSSRIYSDVSPFKRASDLMIHW NEFVFKVMPEDIAGDGFRLASIPVIPDSEVKAVLRKRENTNYIHWGALSISIDALFKK NAGVSGWCYVYDNRWETFEQARLQKFRFNLDSGSATLVTSPNFPVSLDDPGLSNSICV AVMFENLNFKLDSYPISVRVGTMCRFFDSFLSNVKNKSDSNFLLEASNADPLGASAFG FDADDQVSELFNYIQTVPTQAIKSREHEIPRGMFGMMGKKTVKSFEFASGSRDLSKMK PRRGRSIERSSSQRHVPGFKSQDERVEHQGLATDSDFENFLKSKGKGEAGPKSSASEG SSVDNISAREFQFARQSQAKENGGSSKSSFKGGRRSESVPGRRRQTPSWKDRGNPGTD TGVHLREHSNPGDLGTDRVPGRDGGGEVNGGSEGDKFLQPEVGGGSYQGIQDYIFGPE YKRDDIPPGL" /product="movement protein" /note="MP" CDS 6734..7315 /codon_start=1 /protein_id="AGW07341.1" /translation="MAAVLNLHLKVDADLKAFLAAEGRPLHGKTGAILEQILESIFAN IAIQGTSEQTEFLDVMVEVKSMEDQKVISSYNLKSVVDLIKAFKTTSSDPNINGMTFR QVCEAFAPEARNGLVKLKYKGVFTNLFTTMPEVGSKYPELMFDFNKGLNMFIMNKAQQ KVITNMNRRLLQTEFAKSENEAKLSSVTTDLCV" /product="coat protein" /note="CP" ORIGIN 1 gtaaacagat tgacgtaacg tctcgactgt ggccaagggt cagcatctta tgatgctata 61 aaatcaaata caataacatt gtattccaaa gctttccgtg tgagcacgtg agagatcaga 121 tggctttctc ttatagaacg ccacaagaag aacttcttag tagattacca caatctcaac 181 aggaagttat cagcggctac caatacgagc gcattcaaaa ggaggaagag aagaaggtgg 241 aaaacttctc tttttaccta ccagagagaa cccgggaatg gttcactaag tctggtgttt 301 acctatcacc tttcgcttat gtaaatcact ctcaccctgg ttgcaaaact ctggagaacc 361 accttttatt taatgttgta gctagttaca ttagtaagta cccatatgta gcttgtttga 421 gtattaaatc taataaaatg agtaaaatgg aacgtttagg ttccaactct gttcgcactt 481 atgatatttt aaataggtta gtcacttcca aagataaagc acggtatgga cctctggcca 541 cccctgagag gtcaccctgc ccgaagaaaa ccaacatttt catacatgat gaaattcatt 601 attggtccag gactcaactt gaaagttttc ttgccgttca taggccaaag aatttatggg 661 ccacattggt ttttccccct gagattttgg caggttacaa atcctctgtg cttccttttc 721 tgtatcaatt tgagattcat gataaagatc ttgtgtacat gcccgatggt gttcgatctg 781 agagctacac acaacctttg gagaacggat atctgctgag ctccagtagc atccttgtgc 841 aaaacaaaaa aacgggagct gagctacgtt atcaagttag cttggtttac tcactgggtt 901 ctcatcatct ctttcatatt tacccaactg aggatttgct taaggaagag gtcaggaggt 961 ttgggccata tgatcttttt gatgtcggga gtttatttgt caaaccagtc agggtgccca 1021 ttcaggattt tccattgagt gttttcaaga agatatttat ttatttaagt tctctgaaaa 1081 aacctgacgt tcagtccgca gtggccaaat tacgccagtt gtccgatgca gatatttcca 1141 ttgagtctgt attcatggtt caagagtttg ccagcaggat tgagaggaat ggagttggga 1201 gctggtcatg ctccttctgg gagtgcatga aggattggtt ttttgacaag cttccttaca 1261 gagaagtgat tgaaaagatt ggtctagctg atgatttcac aagacgcttg atgaaactca 1321 aaccactggc ttttgacata catacatcag acaggccact gacagttagg atggtcattg 1381 acagcatatg ggaggaaaga gtctgcatgg gggatagcat tccaaatcaa atcttctatg 1441 ggcgcaagga atggatacaa catggagtta tgcccatgat aaagaggggt ctgtcaaagc 1501 ttgtgccagg gcgtgatata cttgagcctt cataccctca ggagattttt tcagatatac 1561 tttcctcaac tcctttgggt aaatcttatg actccaaact gagttcaaga aatgcaagcc 1621 caatggtgat aatgcgctca tcgcgatgtt attctgaggc agcggagttt aaatcaaact 1681 gcctaagcat atgcgctgca actgatgcaa acagggcaga taagactgca tttgaaatgg 1741 agttcattaa gagaaggaaa atgatctctg ataagtgcct ggaatttcac atgaagaaag 1801 tcaaagtcaa aaatccagaa gagcttgcac tcaaactttc aaaaatgaac caggttcctc 1861 acatcaggaa aaagataaaa aaaaatagaa ttcgcctgat gcctagttac ctgacgtgca 1921 catctgatga tagggggatc aaagggaatg ataaggttgc ccaaatggtg cacaagggga 1981 aagaagagga agttgaaaga agaaatgtgg aggtcgtcat tgaaaaggaa aaaaccaaaa 2041 ttgaacaaaa ctctggttca aggaatgagg cagaggagat tcacttttca ttgactcatc 2101 tagttggaag agagaagatt tgtgcagccg ggcttgtcaa aactgttggt aatgactttc 2161 tttacctggg aagacaaatt gaggatcttc cgcttgtgcg cataggaaag aggagagcag 2221 cctacttttg tctggacttc cccatggtgt actttcatga taaggtgtct tatccgactt 2281 tcgaggccac aggatcaatc aaacaagcaa taatcagtgc aagagacaaa tggggaattg 2341 attttaacag cgctcttgtt caggtatatg aggatgggtg cagtctccct ttgcatagag 2401 atgacgagga gtgttatgat gatgatggta ttttgacaat caatgtttgc ggggatgcaa 2461 agtttcacac tacctgtcac gatgaaatta ttgatctaaa gcaaggaaat gaaattctga 2521 tgccggctgg ttttcaaaaa agaaacaagc atgctgttca ggtgacgtca gaaggaagaa 2581 cgagcgtgac aatcagggtg cataaacgtg atttcagctt tgaatctaag gtcaaatttg 2641 ttaaaggaaa actggattgc cttttctctg cagttgcgga agtgattcac aagaaacctg 2701 aggaggtgat ggcctttgtt cctcacattt tggataggtg tataagcaac agaggttgtt 2761 ccattgacga tgcaagggca atctgcgaag cctatgaaat caaacttgaa tgtgaaggag 2821 attgtggcct agtggaatgt ggaaccgttg gactttctgt tgggagactt ttgttgagag 2881 gaaaccactt tcgagttgct tcggtgagaa ggtcatcaat tgattctctt gcaaattcaa 2941 gtaaagaagt gaaagcgaat ggagtcctcg accatgttat gttcaacttt catgagaggc 3001 ttaaagaggt cgaacctgat ttgaattcag ctgaaattaa ggtcaatctg gaacgtgccg 3061 gcaaattgct taagagtctg atggacggca tgacaggaat agtgtcacac aattcgacac 3121 atgaggggtg gaggatgatc aaaggcataa acagcacctc tgagatgaga aacttcatga 3181 agatgatcaa gggtgatgtt cctgatgaga aatgtgaaat gctggaaaag gttcaggagc 3241 tgaatttctt caagagaaag atctatggga tttttggctt tgcgggttct ggcaagagtc 3301 atgcaattca aaatctaatt tactccgaat tcaaaaattc acaaggggtc ttggttgtgt 3361 gtcctagaaa atttttggcc aaagattgga gtgagaaagg tgtgaatgat aaggacatca 3421 aaacattcga aagtgccctt aaaagtgaca tcagaggaaa gaggcttttt atacttgatg 3481 aggtcagttt gctaccaaga ggcttcactg atcttctgat gcttaagctt catatggatg 3541 gggtgctcaa gacttcaact atcgtctgca taggagaccc gttgcaagct ggatacttct 3601 gcccaaaaga tgatggatat ttggcgaggg acggtgaaat aatgaggctt ttcaaggagg 3661 gaatcaggta caagtggtac agctacagaa tcaataaatt catggcgaag aagttgagca 3721 taagcacaat gaatgatttc acgggcatag atcaacaaag cctagtttac aaggatatgc 3781 catcagcaca tcatttcatg aaggaaggga ataatcatcc tgaagtgatt ttggtcgcca 3841 gcacgataga gaaggaactc tactccaact atgggaatgt gatgactttt ggngagtccc 3901 aaggcctaac cttcaattgc ggtgtcattg ttctatccga agaagccaaa ttgtgctctg 3961 atgcccacat catggttgcc ataacaagat tcagaagagg gttctgcytt gcccttggga 4021 gtaaagggtc aaaagaggat tacatgcggt caatgaagag tggtctcctg cagagaatgt 4081 gttccggaat tggggcttca agggagttta ttctgagctc ttcatctgtc aaacttattc 4141 taagtgagaa agatattgcc aaaggggctg ggttggatga aatggacaga gaggccaggt 4201 tagaagggga tgtttggctg aaaagtatga tatacttggg caaaaggtat catttggttg 4261 aaccattggg acaagtaatc aagctgacag acggtgcaat caaatgtcat attccagtgt 4321 gttctcctca aaccttgatg ccagagcttg aaaaaattca ggcaagggag tacagggaat 4381 tcaaaggaag gaatggttgg tcaaatcagt ttagagaaga ggcaggccca aactggaaat 4441 ttccttacaa ggtcaaccaa gcaatgagct tcgaagcagt gtacccaaga cacagaatgg 4501 atgatgacct cactttcctt gcagccatca agaagagatt gcggtttgat aatgttgcca 4561 acaactatgc aaaattcaag gcagcggaaa gcagaggtaa atatttggca aaaatcttcc 4621 ttaagcatgt cccaatcaaa tgtgggaggg atcaaagatt attggatcag tgtaggcagg 4681 agtttgagga gaccaagctt tcaaagagtg cagccacaat aggcgcacat gctcagagat 4741 ctgattcaga ctggccattg gacaaaatat tccttttcat gaagtcccag ttgtgcacaa 4801 aatttgaaaa gagatttaca gaggcaaagg ctggacaaac gcttgcatgt ttcccacaca 4861 aaattctagt tgagtttagc ccatggtgca gatacacaga aaaggtcctc acagcaagtt 4921 tgccagacaa ttattacatt catcaaagga aaaacttctg tgaattggag gattttgcaa 4981 aaagattttc caacggttcc acatgcgttg aatctgatta cacagccttt gatgtttcac 5041 aggatcacac aatacttgct tttgaggttg agcttttgag acactttggg tgggacgaca 5101 gcattctcca gagttacatt agaatgaaat gcacattggg ttgcagattg ggtggcttcg 5161 caataatgag attcacaggg gagttttcca cttttttgtt caatactttg gccaacatgg 5221 tattcacctt ctgcaggtac gaggttccgg atggcacgcc aatatgcttt gcgggtgatg 5281 atatgtgcgc cctaagaaat ttgagggaaa tcaacactca tgagcttatt ctaaataaat 5341 tgagcctcaa agcgaaagtg aacagaacaa aggttccaat gttctgcggg tggaggcttt 5401 gctgcgatgg tttgattaag gagccatgct tgatctatga gaggttgcaa gtggccattg 5461 aaaacggcag gttgatggat gtaatagatt cctacttttt ggaattttca tttgcctaca 5521 agttaggtga gaggctctat tcacatcttg aaatcgaaca gttaaattat catcaggttc 5581 tgaccagatt cttcatcaga aacaagcact tgttgagagg tgactcaagg cacaatattt 5641 ctgaattgga gtggctttct gacgaagatg gcgatgatga taaggggtca caaattgaag 5701 atcgcagaag gggatattcc aattgctggg gtgaaaagct ccagaattta ttctgatgta 5761 agtcctttca aaagagcctc tgacctcatg attcattgga atgagttcgt atttaaggtc 5821 atgccggagg acatagcagg cgatggcttc aggttggctt caataccagt cataccagat 5881 tctgaggtga aagcagtgct cagaaaaaga gagaacacta actacatcca ttggggggct 5941 ctttcaatat caatagatgc attgtttaag aaaaatgctg gtgtttctgg gtggtgctat 6001 gtgtatgata accggtggga aacttttgag caagccaggt tacagaaatt ccggtttaat 6061 ttggacagtg gttcagccac tttggtgact tctccaaact ttcctgtttc tcttgatgat 6121 ccgggacttt caaattcaat ttgtgttgca gtcatgttcg agaatctaaa tttcaaactg 6181 gacagctatc ccattagcgt tagggtggga accatgtgca gattctttga cagcttcctg 6241 agtaatgtta agaacaagag cgactccaac ttccttttag aggcttcgaa tgcagatcca 6301 ttaggtgcga gtgcttttgg gtttgacgct gacgatcagg ttagtgagct gtttaattac 6361 attcagacag tccctaccca ggcaatcaag tcaagagagc atgagattcc aagaggaatg 6421 tttggaatga tggggaagaa gactgtgaag tctttcgaat tcgcttctgg gtcaagggat 6481 ttaagtaaaa tgaagccacg gaggggaaga tcaatcgaaa gatcctcaag tcaaaggcat 6541 gttcctggat ttaagtccca ggatgagaga gttgaacatc aaggtttagc aactgattcg 6601 gattttgaga acttcctgaa aagcaaaggg aaaggagaag ctggaccgaa gtccagtgct 6661 tcagaagggt catccgtgga taacatttct gcaagagaat ttcagtttgc tagacaaagt 6721 caggcgaagg agaatggcgg cagttctaaa tcttcattta aaggtggacg cagatctgaa 6781 agcgttcctg gccgcagaag gcagacccct tcatggaaag acaggggcaa tcctggaaca 6841 gatactggag tccatcttcg cgaacatagc aatccagggg acctcggaac agacagagtt 6901 cctggacgtg atggtggagg tgaagtcaat ggaggatcag aaggtgataa gttcctacaa 6961 cctgaagtcg gtggtggatc ttatcaaggc attcaagact acatcttcgg acccgaatat 7021 aaacgggatg acattccgcc aggtttgtga ggcctttgcc cctgaggcaa gaaacgggtt 7081 ggttaagcta aagtataaag gggttttcac aaacctcttt acgaccatgc ctgaagtggg 7141 tagtaaatac ccagagctta tgttcgactt caacaagggt ctcaatatgt ttataatgaa 7201 caaggctcag caaaaagtaa taactaatat gaaccggcgt cttttgcaaa ctgaatttgc 7261 aaaaagtgaa aatgaggcaa aactctcgtc tgttacgact gatctttgcg tttaatttgc 7321 taaagaggtt cggttcaata aataggataa ataaatagtg tgtatttaat gtgtgtttgt 7381 gtttgcagtt atttacatca ataataaatt gtgtgcatta gtgcacccaa actctggaac 7441 ccatgaaaga gtataaagag tcatggtatt aaattggagt gtttagactt ataataaata 7501 gcctgtagac ttttaaatat tttactac //