LOCUS KY883318 3435 bp RNA linear VRL 10-JUL-2017 DEFINITION Apple mosaic virus isolate K75R1 segment RNA1, complete sequence. ACCESSION KY883318 VERSION KY883318.1 KEYWORDS . SOURCE Apple mosaic virus ORGANISM Apple mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae; Ilarvirus. REFERENCE 1 (bases 1 to 3435) AUTHORS Kinoti,W.M., Constable,F.E., Nancarrow,N., Plummer,K.M. and Rodoni,B. TITLE Generic amplicon deep sequencing to determine Ilarvirus species diversity in Prunus JOURNAL Unpublished REFERENCE 2 (bases 1 to 3435) AUTHORS Kinoti,W.M., Constable,F.E., Nancarrow,N., Plummer,K.M. and Rodoni,B. TITLE Direct Submission JOURNAL Submitted (01-APR-2017) Systems Biology, La Trobe University, 3086 Kingsbury Drive, Melbourne, VIC 3086, Australia COMMENT ##Assembly-Data-START## Assembly Method :: CLC Workbench v. 7 Sequencing Technology :: Illumina; Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3435 /mol_type="genomic RNA" /country="Australia" /isolation_source="leaf" /collected_by="W. Kinoti" /segment="RNA1" /collection_date="23-Jun-2015" /db_xref="taxon:12319" /isolate="K75R1" /lat_lon="37.47 S 144.78 E" /organism="Apple mosaic virus" 5'UTR 1..60 CDS 61..3201 /codon_start=1 /protein_id="ASJ26561.1" /translation="MDRTALSNLLVATIQKQCLDENSAIGKAFSERGIDVLDRNLPKG SEGENFNISFAVTAEQQALLRRNFPGRDIRFTQSNSHSHNYAAAHRLLETDFIYGCFG TVDEPVIDLGGNFVSHHKRRRYNVHSCCPLLDDRDGARFTERMISLKTYYRTHQDEKH EADYCKCRFEECDRKADYVMAIHATSDLSLEKLCKALANKGTKKMIMSIMMDPNMLIR DYGEIPNFNVRWKIDHEADTIKFDFIDAPCLGYQHKFSILKQYLTVNAGVVGGTQAFR VERRADLGGVFIVDITAVAGYHKKMIVGGSRSCAWASCVKGKTVVNTAEVVDDWFNKL TKRSCVLIDTKVLTRVLESSFRQFKPTTDPASAIQTMATMLSSSTNYTVINGVTLQAG ESLPFSDYVSVATTIYVRTRKMYEAIEQNIKKLIEPQLTNIHDVLPAQPDSGFSAHEG LSGFLGNLFMPLPKKVQVDGLKSRRDVYEIEGKSWSEWVKSEAYLFLGRCKVEQDLIS DPKLFIPLERVLATKWQGNTTLTVDDLVETMVKRVRIGWRKRGTRDVKFLSLQKLQRN LLTIAKWCENHPTGAMPKGFEKTAALVPEMIDLNEVVESKSPSEAVVNKYASEIQEAI TYFRTEMETNDKRLKSVGDHCEWSKKYMRTIWAGDESRGLYIPTRGAWLGPRSVPKGE RRGKYERGLTKEGYVLLRWDNEKRGELDYDCKRNLMKYPVIFFDKSCEFAAGLRLIPA LERALGMEAKFSRRLVDGVAGCGKTTKILAEGRLTGEDPDLFLTSNRSSAMELREKLV GSPLSKSQRVRTCDSFLMNGSKPSSVRVIFDECFLQHAGCVYAAASLAGAEELVLFGD TKQIPFVSRIPHFRLKNNKVFADERREHNMTYRSPADTTMALSKWFYKKSIRTANRTI RSMIVKPIVSVNQVDNDFELYITHTQAEKHTLIATGKFDKNKVHTSAEAQGMTERNVA FVRLSRTSISLYTGKDPLMGPCHGLVALSRHTKKFVYFTVADTDAEDLIAKSIRDVNT ASDDKVASYIHGDHKL" /product="replicase P1" 3'UTR 3202..3435 ORIGIN 1 tgaaattaat taactttcta tcgtgtttca cacattaacg aatagtttgt gtgatgtgag 61 atggatcgca ctgcactctc caatttgtta gtcgcgacga tacaaaaaca atgtctggat 121 gagaattcag cgataggtaa ggcattttcc gagagaggaa ttgatgttct tgaccgaaat 181 ctcccgaaag ggtctgaggg agaaaatttc aatatcagtt tcgctgttac agccgaacag 241 caagcattgc taaggcgtaa cttcccggga agggacataa gattcacgca gagcaattcg 301 catagtcata actatgcagc agctcataga ctgttggaaa ctgacttcat ctacggatgt 361 tttggaacag tcgatgaacc ggtgatagat ttaggtggaa acttcgtctc gcatcacaag 421 agaagacggt acaacgttca tagttgttgt cctttattgg atgaccgcga tggtgcgcgt 481 ttcaccgaga gaatgatttc cttgaagacc tattatcgaa ctcaccaaga cgagaagcac 541 gaagcagatt attgcaagtg caggttcgaa gaatgtgatc gaaaagccga ttacgtcatg 601 gctatccatg cgacgagtga tttatcgctg gagaagttat gcaaggcttt ggccaacaag 661 ggtacaaaaa aaatgattat gtctatcatg atggacccga atatgctgat aagggattat 721 ggagagatcc cgaatttcaa tgtccgatgg aaaatagatc atgaggccga tacgattaag 781 ttcgatttca ttgatgctcc ttgtctgggc tatcagcata agttctcgat cctaaaacag 841 tatctcaccg tcaatgcggg ggttgtcggt ggaacacagg ctttccgagt cgagaggaga 901 gccgatttgg gtggtgtctt cattgttgac atcactgctg ttgcgggata ccataagaag 961 atgattgtgg gaggaagtag atcttgcgct tgggcatcat gcgtgaaggg taagacggtt 1021 gtgaatactg ccgaagtcgt tgatgactgg tttaataaat tgacaaaaag atcatgtgtt 1081 ctgatcgaca cgaaagtgtt gactagggta cttgagtcga gttttaggca gttcaaacca 1141 acaaccgacc ctgcaagtgc aatacagacg atggcgacga tgctgtcttc ttctacgaac 1201 tacaccgtca ttaacggtgt tactcttcaa gctggtgaga gtcttccctt ttcggattac 1261 gtctcagtag cgaccacaat atacgtccgg actagaaaga tgtatgaggc gattgagcag 1321 aatatcaaga aattgattga acctcaattg acgaatatac acgatgtgtt gccagcccaa 1381 ccagatagtg ggttttcagc ccacgaaggt ttgtcgggtt ttcttggtaa cctattcatg 1441 cctctaccga agaaggtaca ggtagatggt cttaagtcac ggagggacgt gtatgaaatc 1501 gagggtaaga gttggtctga atgggttaaa tctgaggctt acctgtttct cggtaggtgc 1561 aaggtcgagc aagacttgat ctcagatcct aagctattta taccactcga aagagttctg 1621 gcgacgaagt ggcaagggaa caccactttg actgtagacg atttagtcga aacaatggtg 1681 aagcgagttc gaatcggatg gaggaagaga ggaacaagag acgtgaagtt cttgagtctt 1741 cagaaacttc agaggaatct tctcacgatc gctaaatggt gtgagaatca tccaacaggc 1801 gcgatgccca agggattcga gaagaccgca gcgctggttc cagagatgat agatttgaac 1861 gaagtagttg aatctaaatc accatctgag gccgtggtga ataagtatgc ttcggaaata 1921 caggaagcca ttacttactt taggacggag atggaaacga atgacaaacg attgaagtct 1981 gtgggtgacc attgtgagtg gtcgaagaaa tacatgagga cgatatgggc gggagacgag 2041 agtcgaggtt tgtatattcc cacgagagga gcttggttag gaccacgaag tgtgccgaaa 2101 ggggaacgaa gaggtaagta cgagagagga cttactaaag agggttacgt gttattgagg 2161 tgggataatg agaagcgggg tgaactggac tatgattgta agaggaattt gatgaaatac 2221 cccgtcattt tttttgacaa gtcttgtgag ttcgcggcgg gtctacgtct cataccagcc 2281 ttggaacggg ctttaggtat ggaagcaaaa ttttcaagaa gattagtcga tggtgtcgcg 2341 ggatgcggta agactacgaa gattttggcg gagggtagac tcacaggaga agaccccgac 2401 ttgtttttga caagcaatcg tagttccgcg atggaattac gtgagaagtt ggtcggaagt 2461 cctctgagta aatcgcagag ggttagaacc tgtgactcat ttcttatgaa tggttcaaag 2521 ccttcatcgg ttcgagtgat ttttgacgag tgtttcttac aacacgctgg ttgcgtttac 2581 gcggctgcta gtctagcagg agctgaggag ttagtattgt ttggtgatac gaaacaaatt 2641 ccctttgtat caaggattcc tcacttccga ttaaagaata ataaggtttt tgctgatgag 2701 cgaagggaac acaatatgac atacaggagt cctgcagata ccacaatggc tttgagcaag 2761 tggttctaca agaagtcgat acgcactgcc aatagaacaa ttagaagcat gatagtgaag 2821 ccgattgtgt cagtgaatca agtcgataat gactttgagt tatatattac acacactcag 2881 gctgagaaac acactttgat tgcgacgggt aagttcgata agaacaaagt gcatacttct 2941 gctgaggctc aagggatgac ggaaaggaat gtggctttcg tgagattatc ccgaaccagt 3001 attagtttgt atactgggaa ggacccgtta atgggcccgt gccacggatt agtggctttg 3061 tctaggcata cgaagaaatt tgtgtatttc acagttgccg atacagacgc tgaggatttg 3121 attgctaaat cgattaggga tgtgaatact gctagtgacg ataaggttgc tagctatatc 3181 cacggagacc ataaattatg agcgggaggc tcgatggttt tatgtgggag gagcgtgaag 3241 ctcgaagttc cgagagggaa ctaaagcata tcgtgaggat atgcgttgta ggggagatgg 3301 accccgagac tcgattagag tcagaccgta ccaccgtgtg ggtttgcggt caatttttcg 3361 agcgtcgcct ccttaggcgt gtcctaggaa gacaacaact cgacgtagag ttgatgccaa 3421 tgtctgtgaa agaaa //