LOCUS KY883319 2929 bp RNA linear VRL 10-JUL-2017 DEFINITION Apple mosaic virus isolate K75R2 segment RNA2, complete sequence. ACCESSION KY883319 VERSION KY883319.1 KEYWORDS . SOURCE Apple mosaic virus ORGANISM Apple mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae; Ilarvirus. REFERENCE 1 (bases 1 to 2929) AUTHORS Kinoti,W.M., Constable,F.E., Nancarrow,N., Plummer,K.M. and Rodoni,B. TITLE Generic amplicon deep sequencing to determine Ilarvirus species diversity in Prunus JOURNAL Unpublished REFERENCE 2 (bases 1 to 2929) AUTHORS Kinoti,W.M., Constable,F.E., Nancarrow,N., Plummer,K.M. and Rodoni,B. TITLE Direct Submission JOURNAL Submitted (01-APR-2017) Systems Biology, La Trobe University, 3086 Kingsbury Drive, Melbourne, VIC 3086, Australia COMMENT ##Assembly-Data-START## Assembly Method :: CLC Workbench v. 7 Sequencing Technology :: Illumina; Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2929 /mol_type="genomic RNA" /country="Australia" /isolation_source="leaf" /collected_by="W. Kinoti" /segment="RNA2" /collection_date="23-Jun-2015" /db_xref="taxon:12319" /isolate="K75R2" /lat_lon="37.47 S 144.78 E" /organism="Apple mosaic virus" 5'UTR 1..57 CDS 58..2685 /codon_start=1 /protein_id="ASJ26562.1" /translation="MDPLFSAFRNVDFSVKKMFTVEHEGELEEPLLQLKYRTLTGISK TDEYAKLKQEYDECVTGEARHEALAVLNEYTRNHHDRITGFTNLFVGLALVNFLGPKM ERVFTQFVGTEMGPLLQTRWRGLFDLELESDYFIEVPNFDDYYVHDYEPYVEIDESVL LPEEIEITSTEKSSEDVTSEETVEIDLTEPAMNSDLVTIRRSFEIWADGSEFGEELPP IPSDFTVSAEGDDSSRDETEDSFDINALDDARPALENPGKIVKTPLPLIPDVGRFETN QLMMVKEVVPHKFESILECHEKVLARNDWKSLAMYFPIGDVPTCGYTDLMAFPVKHTS PEFIQMAIDEMLPGISDIDDSFFQELVETSDIALELDRATFDMSVFNDWTPKSGGRLN GLFQTGNISKRVPTFREASLAIKKRNLNVPDLQQVLHEDDEARFIANKFINTVIDPNK LAQFPGYISEGEMGYFNKYLSGKAVPDDAFVDPCALVSMDKYRHMIKTQLKPVEDTSQ LFERPLAATITYHDKGKVMSTSPIFLMMCNRLLLCLNDKISIPSGNTSLFSLDPFAFE MTKEFKEIDFSKFDKSQQRLHHLIQFHIFTALGAPAEFIEMWFGSHEISHIRDGPCGV GFSVNYQRRTGDACTYLGNTITTLSALAYMYDLLDPNVTFVIASGDDSLIGSIKPLDR SEEFKFVTLFNFEAKFPHNQPFVCSKFLCLLPTVSGGKKVLAVPNALKLNIKLGVKDL APCVFDAWYKSWLDLIWYFDNYLVVSTMKDYISHRYLRRQTCYQEGAMLAYRTIFSSR EKCLKSLFGITSKDLKRMVRKLQPERKKAPINQITMEKPIGDNLIVRKGFVEKELVDR RPRLGKKERKELEKRRLKT" /product="polymerase P2" 3'UTR 2686..2929 ORIGIN 1 attaattaat tatcttttca gctgtgatct cacatttaac gaaaagttta tgtgattatg 61 gatcctctat tttcagcttt ccggaacgtt gacttttcgg tgaagaaaat gtttacggtc 121 gaacatgagg gagaacttga ggaacctttg ctccagttga agtatcgaac ccttactggg 181 atttcgaaaa ccgatgagta cgcgaagttg aagcaggaat acgacgaatg cgtgacagga 241 gaagcgcgac atgaagcgct agcagtttta aatgagtaca ctcgaaatca ccatgaccga 301 attaccgggt ttaccaatct gtttgttggg ttggcattgg tgaatttcct tgggccgaag 361 atggagagag tgtttactca atttgtaggg acagagatgg gaccattgct gcagacgcga 421 tggagaggat tgttcgattt agaacttgaa tctgattatt tcatcgaggt cccgaatttt 481 gacgattact atgttcatga ttatgaaccg tacgtcgaga tagacgagtc tgtactgcta 541 ccagaagaga tcgagataac ttcgactgag aagagttctg aggacgtgac gtccgaggag 601 actgttgaga tcgatttaac agaaccagcg atgaatagtg atctggtaac tattcgcaga 661 tcgtttgaga tctgggctga tggatctgag ttcggtgagg aattgcctcc gattccttcg 721 gactttacag tctccgcgga aggagacgac agttctcgag atgagactga ggattcgttt 781 gatatcaatg cgcttgatga tgcgcgtcct gctttggaga atcctggaaa gatcgtgaag 841 acaccattgc ctcttatccc cgatgtggga agattcgaga cgaatcaatt gatgatggtt 901 aaggaagttg tgcctcacaa gtttgaatca attctggagt gtcatgaaaa ggttttagcg 961 agaaacgatt ggaagtctct tgcgatgtat tttccgatag gagatgttcc cacttgtggg 1021 tatacagatc ttatggcatt ccctgtgaag cacacaagtc ctgaatttat ccaaatggcg 1081 atcgatgaga tgctaccagg aatttctgac attgatgaca gtttctttca agaactggtc 1141 gaaacttcag atattgcctt ggaattggat agggcgactt tcgatatgtc agtgttcaac 1201 gactggactc cgaagtcggg tggtagactg aatggactgt tccaaacagg taatatctcg 1261 aaaagagtac cgactttccg cgaagcgtct ctcgctatta agaagcggaa tttgaatgtc 1321 cctgatttgc agcaagtttt gcatgaggac gatgaagcta gatttatagc taataagttc 1381 ataaacaccg ttattgatcc gaataaattg gctcagtttc caggatacat atccgaaggt 1441 gaaatgggtt attttaataa gtatctatca gggaaagctg tacccgatga tgcttttgtg 1501 gatccatgtg cgttggtctc gatggacaag tatcgacata tgattaagac acaacttaaa 1561 cctgtcgaag atacgtctca attgttcgag agacctttag cggcaaccat tacttatcat 1621 gacaaaggaa aggttatgtc aacatcaccg atattcctga tgatgtgtaa tcgtttgctg 1681 ctgtgtttga acgataagat ttccattcct tcgggaaata catcattgtt ctcgttggat 1741 ccctttgcgt ttgaaatgac gaaagagttt aaagagattg atttctcgaa attcgataag 1801 tctcagcaaa ggttacatca tttgattcaa tttcacattt ttaccgctct tggagcgcct 1861 gctgaattca ttgaaatgtg gtttggttca cacgagatat cgcatatcag agacggacct 1921 tgcggtgtcg ggtttagtgt gaattatcag cgtcgaactg gagacgcttg cacatacctg 1981 ggaaatacca tcactacttt atcggctttg gcttacatgt atgatctttt agatccgaac 2041 gtgacgtttg tcatcgcttc aggagacgat agtcttatag gttcaattaa acctctggac 2101 cgatctgaag agtttaaatt tgtcacgttg ttcaattttg aagcgaaatt tccacataac 2161 caaccttttg tgtgcagtaa atttttatgt ttactgccta ctgtgagtgg gggaaagaag 2221 gttctggcag ttccgaatgc tttaaagttg aatataaaac taggtgttaa ggatctggca 2281 ccatgtgttt ttgatgcttg gtataaatcc tggttggatt taatttggta cttcgacaat 2341 tacctggttg tgtcgactat gaaagactat atcagccata ggtatttaag aagacagaca 2401 tgttaccaag aaggtgcgat gttggcttat aggacgatat tctcgagtag agagaaatgt 2461 ttgaagtcct tgtttggtat cacttccaaa gatctcaagc gaatggtgag gaaattgcaa 2521 ccagagagaa agaaagctcc gataaatcaa atcaccatgg agaaaccgat tggagacaac 2581 cttatcgtga ggaaagggtt tgtcgaaaaa gaattggtgg atagaagacc cagattgggt 2641 aagaaagagc ggaaagagct cgagaaacgt cgtttgaaga cgtaaattga aagttagata 2701 gagcggaaag ctcgaagttc taaacttgat gagcgtgaag ctcgaagttc cgagagggaa 2761 ctgaagcata tcgagaggat atgcgatgta ggggagatgg accccgagac ttgattagag 2821 tcagaccgta ccaccgctag tggatttgcg gtcagttttc cgagcgtcgc ctccttaggc 2881 gtgtcctagg aaaacaacaa ctcagtgtgg agttgattcc aatttctgt //