LOCUS JQ308181 6495 bp RNA linear VRL 04-APR-2013 DEFINITION Apple stem grooving virus isolate ASGV-CHN, complete genome. ACCESSION JQ308181 VERSION JQ308181.1 KEYWORDS . SOURCE Apple stem grooving virus ORGANISM Apple stem grooving virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Capillovirus. REFERENCE 1 (bases 1 to 6495) AUTHORS Zhao,L., Hao,X., Liu,P. and Wu,Y. TITLE Complete sequence of an Apple stem grooving virus (ASGV) isolate from China JOURNAL Virus Genes 45 (3), 596-599 (2012) PUBMED 22864549 REFERENCE 2 (bases 1 to 6495) AUTHORS Zhao,L. TITLE Direct Submission JOURNAL Submitted (20-DEC-2011) College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China FEATURES Location/Qualifiers source 1..6495 /mol_type="genomic RNA" /country="China" /collected_by="Lei Zhao" /collection_date="10-May-2011" /host="apple" /PCR_primers="fwd_name: asgvf1, fwd_seq: gaaatcgcaatcaataaactcc, rev_name: asgvr1, rev_seq: tttagagggcataaagacg" /PCR_primers="fwd_name: asgvf2, fwd_seq: tcattgctgctagtttctttga, rev_name: asgvr2, rev_seq: ttcttttgacacttggtgtgta" /PCR_primers="fwd_name: asgvf3, fwd_seq: gcagaaccgtggtaactc, rev_name: asgvr3, rev_seq: ttgcacccgttcttttccat" /PCR_primers="fwd_name: asgvf4, fwd_seq: tctgatgatttgtttataatgcc, rev_name: asgvr4, rev_seq: gcttcggagacttgataattcca" /PCR_primers="fwd_name: asgvf5, fwd_seq: cctatgttctgtggatggta, rev_name: asgvr5, rev_seq: cagagaagaaggtaaagctc" /PCR_primers="fwd_name: asgvf6, fwd_seq: atgagtttggaagacgtgc, rev_name: asgvr6, rev_seq: ctaaccctccagttccaga" /db_xref="taxon:28347" /isolate="ASGV-CHN" /organism="Apple stem grooving virus" CDS 36..6353 /codon_start=1 /protein_id="AFG28408.1" /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFS FSITPEDQELLTKHGLTLAPIGFRSHSHPISKMIENHLLYICAPSLLSSFKSVAFFSL RESKVNSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFLSFRDRVIGLRDQCF TRNKFPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRV YTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHV FSFDRGRACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANA ASAVAKLRQLEKRDLYPDELNFVYSFGEHFKNFGMRDNFDVSILQWVKDKFCQVMPHF IATSFFEPTEFHLNMRKLLNDLATKGIEVPLSVIVLDKVNFIETRFHARMFDIAQAIG VNLDLLGKRFDYEAESEEYFSENGYVFMPSKSNPERNWILNSGSLKIDFSRLIRARRF RLRRDFLDPISKGRSPRKQLFLESMGSIESNSNVEKCGESDGTKIEGSVENDQPHGAS HTPMDTEDGQGFEGSLLIDLINCFEPEEVKLPRRKRKNDCVFKAISAHLGIDSQDLLN FLVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLSMVYTSDFREMAVLNRKYGVNGK MYCTIKGNHCELSSKECFVRLLKEGGGAQMSNENLNADSLFDLGKFVHNRDRAVKLAK SMARGTTGLLSEFNPEFCRTVVTLSELFPENFSSAVGLRLGFAGSGKTHKVPQWINYT PSVKRMFISPRRMLADEVVAQLKGTSCEVHTWETALRKIDGTFMEVFVDEIGLYPPGY LTLLQMCAFRKIVEGQSERFLKGKIAELSKTCLNIRCFGDPLQLRYYSAEDTNLLDKT HELDLMIKTIKHKYLFQGYRFGQWFQELINMPTRVDDSKFSRKFFADIWSVKTEDYGL ILVAKREDKGVFAGRIPVATVSESQGMTISERVLICLDQNLFAGGANAAIVPITRSKV GFDFILKGNSLKEVQRMAQKTIWQFIIEGKTIPMERIVNMNPGASFYESPLDVGNSSI QDKASHDLFIMPFINLAEEEVDPEEVTGDVIKPVEWFKCHVPVFDTDPMLAEIFDRVA AKEKREFQSMLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQSSDDVTFWAGVQKRIR KSNWRREKSKFEEFESQGKELLSEFISMLPFEFKVNIKDIEDGEKSFLEKRKLKSEKM WANHSERSDIDWKLDHAFLFMKSRYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR AIESAFLRSCGESYYIHSGKNFFCLDSFVTKNADVFDGFSIESDYTAFDSSQDHVILA FEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQL KYKVDPRKHRILFAGDDMCSLSSLKRRRGERSTRLLKSFSLTAVEEVRKFPMFCGWYL SPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYH YLVIRFFVKNSKLLTGLSKSLIFEIGEGIGSEWQSSMSTISSRKSSQQISKSTQFHPQ SFTKMQPFLNLTFSIALKDLSQISRSPPDPVTASSCQTSNSLTTLRLIQSGKGATSTS TCTMGSSWLELKQCCQISEAWRGESLFTMEPAWIQKEVTYVRTSSSLNLIAAILVSDL STACPPLMSTWQKGLGSVWILIVHSMSRTLSCSLLILVWLTDALIQPDSWKPKLETQG GLHKPLVAVKHLSSMKRSKWQFWTISLHCSWKKVHQTCTLKKGCSEVTKLEGHALSPP KGGQIQNCREREDLGPSQLELKDLEKMSLEDVLQQARRHRVGVYLWKTHIDPAKELMT VPPPEGFKEGESFEGKELYLLLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYN LTTIPKEGETEEQKKTREGSSGEKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRK LCEPFADLAREFLHERWSRGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQ VIDRMTKRLFRTEGQKGVFEAGSESNLELEG" /product="241K polyprotein" /note="contains RNA-dependent RNA polymerase and NTP-binding helicase" CDS 4787..5749 /codon_start=1 /protein_id="AFG28409.1" /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIK RFESNIKVSSRSGDGLVLSDFKLLDDTEIDSIRKRSNKYKYLHYGVILVGIKAMLPNF RGMEGRVIVYDGACLDPERGHICSYLFKFESDCCYFGLRPEHCLSTTDVNLAKRFRFR VDFDCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSRWASQAISGCEALKFNEEI KMAILDHKSPLFLEEGAPNVHIKKRMFRGDKVRRSRSISAKRGPNSELQGKRGFRSLS ARIERFGKNEFGRRASTGEAPPGRSVSMENSHRPGEGTYDGSSP" /product="36K protein" /note="movement protein" ORIGIN 1 aaatttaaca ggcttaattt ccgcgcttta cgtccatggc tttcacttac agaaacccct 61 tagaaatcgc aatcaataaa ctccccagca agcagtctga tcaactgctt tctttgacca 121 ccgacgagat tgaaaagacc ttggaagtga ctaaccgctt cttctctttt tcaatcacac 181 cagaagatca agaactgttg accaaacatg gtttgacact tgcacctata gggttcagat 241 cacattccca cccaatatcc aaaatgatag agaatcatct cctgtatata tgtgctccga 301 gtcttttgtc ctcctttaag tcagttgcct ttttctcact cagggagagc aaagtaaata 361 gctttctcaa aatgcactca gtcttttctc acggaaaaat caaatcttta gggatgtaca 421 atgctataat tgatgggaaa gacaaatata ggtatggtga tgtagaattt ttatccttta 481 gggatagagt gattggtctt agagatcaat gcttcacacg taataaattt ccaaaagttc 541 tgttccttca tgatgagttg cacttcttaa gcccatttga catggccttt ctatttgaaa 601 caattccgga aattgataga gtagttgcaa ccacagtctt tccaatagaa cttttatttg 661 gggacaaggt ctctaaggag cccagggttt acacctacaa ggttcatggt tcttcatttt 721 cattttaccc tgatggtgtt gcctctgaat gttacgaaca gaatttggca aattctaagt 781 ggccctttac ctgcagtggc atacaatggg ccaacaggaa aataagggtg accaagctac 841 agagtctctt cgcccatcat gttttttcat ttgacagagg gagggcttgc aacgaattta 901 atcatttcga caaacctagc tgtctacttg cggaagagat gcgccttctg accaagagat 961 ttgacaaagc agttatcaac agaagcacag tttcttccct cagtacatat atggcttgcc 1021 ttaaaactgc aaatgcggct tcagccgtcg ccaaattgag acagttggag aaaagagatc 1081 tttacccaga tgaactgaac ttcgtctatt cctttgggga acatttcaaa aatttcggga 1141 tgagggataa cttcgatgtg tcgattttac aatgggtcaa agacaaattt tgccaggtca 1201 tgccccactt catcgccacc agtttctttg agccaacaga atttcatttg aacatgcgca 1261 aactgttgaa tgatttggct actaaaggaa tagaggtccc tctttctgta atcgtcctgg 1321 acaaagttaa cttcatagaa accagatttc atgccaggat gtttgacata gcacaggcta 1381 tcggggtgaa tctggattta ctgggaaaaa gatttgatta tgaagctgag agtgaagaat 1441 acttttcaga aaatggttac gtctttatgc cctctaaatc aaatccagag aggaattgga 1501 tcctaaattc tggttcgctg aaaattgact tttcgagatt gataagagct agaaggttca 1561 gattgagaag agattttcta gaccccatat ctaaaggaag gtctcccaga aagcagctct 1621 tcttggagtc aatgggaagc attgaatcaa attctaatgt tgaaaaatgt ggtgaaagcg 1681 atgggacaaa aattgagggc agtgttgaaa atgaccagcc acatggggca tcacatactc 1741 caatggatac tgaggatgga caaggtttcg aaggttcttt actaatcgat ctgatcaatt 1801 gctttgaacc agaagaagtt aagctcccaa ggaggaaaag gaaaaatgat tgtgtcttca 1861 aggctatctc tgcacacctg gggattgact ctcaagactt attaaatttt ttggtcaacg 1921 aggacatatc agacgaactg cttgactgca ttgaagaaga caaagggttg tcacacgaaa 1981 tgattgaaga ggttttaatc acaaaaggtc tctcaatggt ttacacttct gacttcagag 2041 aaatggcagt tctcaataga aagtatggag tgaatggcaa gatgtactgc acaataaaag 2101 gcaatcactg cgaattgagt tcaaaagagt gcttcgtcag attgttaaag gaaggtggtg 2161 gagcgcaaat gtcaaatgag aatctaaatg ctgactcctt gttcgacctt ggaaagtttg 2221 tgcataacag ggatagagct gtcaaactag cgaaatccat ggcgagaggc acaacaggcc 2281 tcctgagcga atttaatcca gaattttgca gaaccgtggt aactctctca gagttatttc 2341 ctgagaactt ttcttctgct gttggactaa ggcttgggtt tgcgggatct ggcaaaactc 2401 ataaggtgcc gcaatggatc aattacacac caagtgtcaa aagaatgttc ataagtccaa 2461 gaagaatgtt ggcggatgaa gttgtggctc aacttaaagg aacgtcttgt gaggtgcata 2521 catgggagac tgctttaagg aagattgacg ggacctttat ggaagtcttc gttgatgaaa 2581 ttggtctgta cccacccgga tatctcacat tgttgcaaat gtgcgctttt agaaaaattg 2641 tcgaagggca aagtgagagg tttttaaagg gcaaaattgc tgaattgtcg aaaacttgcc 2701 tgaacataag atgctttggt gacccgctac aattgaggta ctactccgct gaggacacca 2761 atcttttgga taagacacat gaacttgatt tgatgataaa gacgatcaag cataagtacc 2821 tctttcaagg gtatagattt ggtcaatggt tccaggaatt aataaatatg ccaactagag 2881 tggacgactc aaagttctct agaaagttct ttgcagacat ttggagcgtc aaaactgagg 2941 attatggact catcctcgtt gctaagaggg aagacaaagg ggtctttgcc gggagaattc 3001 cggtggccac ggtgagtgag tctcagggga tgaccataag tgaaagagtg ttgatatgcc 3061 tggatcaaaa cttatttgct ggaggagcca acgctgccat tgttcccata acgaggtcga 3121 aggttggatt tgatttcatc ttgaaaggaa actcactgaa agaagtgcaa agaatggcac 3181 agaaaacaat ctggcagttc atcattgaag gcaaaactat cccaatggaa agaatagtaa 3241 acatgaaccc tggggccagt ttttatgaga gtcctctgga cgttggaaat tcatccattc 3301 aggataaggc ctcccatgac ttgttcataa tgccgttcat aaatttggct gaggaggagg 3361 ttgaccctga ggaagttact ggggacgtga tcaaacccgt cgaatggttc aagtgccatg 3421 tgccagtttt cgacactgac ccaatgcttg cagaaatttt tgacagagtg gcagcgaagg 3481 aaaaaagaga atttcaatcc atgcttggcc tttctaacca gtttttggat atggaaaaaa 3541 acgggtgcaa gatagacata ttaccttttg ccaggcagaa tgtctttcca catcatcaat 3601 cttcagatga cgtcaccttt tgggcaggtg tccaaaaaag gataaggaaa tcgaactgga 3661 gaagagagaa atcaaaattt gaagagttcg aaagtcaagg gaaagaactg ctctctgaat 3721 ttatatcaat gctgccattt gagtttaaag tgaatatcaa agacattgag gatggagaaa 3781 agagcttttt ggaaaaacgg aagttaaagt ctgaaaaaat gtgggcaaat cattcagaaa 3841 gatctgacat agactggaag cttgaccatg cttttctctt catgaagtca cggtactgca 3901 cgaaagaagg caaaatgttt actgaagcaa aagctggaca aactttggca tgttttcagc 3961 acattgtttt gttccgattt ggccccatgt tgagagccat tgaaagtgct tttctgagaa 4021 gttgtgggga atcgtactat atacattcag gaaagaactt tttctgtcta gacagttttg 4081 tgacaaaaaa tgcagatgtt tttgacggat tttccattga atctgattac actgcttttg 4141 actcatctca ggatcatgtt atattggcct ttgagatggc actactgcag tatctgggtg 4201 tttcgaaaga atttcagcta gactatctca gattgaaatt gacccttggg tgcagacttg 4261 ggtccctggc catcatgaga ttcactggag aattttgtac attcctattc aatacatttg 4321 cgaatatgct gttcacacaa ttgaagtaca aagtagatcc aaggaaacat agaatacttt 4381 ttgctggaga cgacatgtgt tccttgagtt ctttgaaaag aagacgaggt gaaaggtcaa 4441 caaggctgct gaaaagcttt tctttgactg ctgtagaaga ggtcagaaaa ttccccatgt 4501 tttgtggatg gtatctaagc ccttatggaa ttatcaagtc tccgaagcta ctgtgggcca 4561 gaattaagat gatgagcgaa aggcagctcc taaaagaatg tgttgacaat tacctgtttg 4621 aagcaatatt tgcctacaga ttaggtgaga ggctgtacac aatcttgaaa gaagaggact 4681 ttgagtatca ttaccttgtg ataagatttt ttgtcaaaaa ttcaaagctg ctaacaggat 4741 tgagcaaaag tttgatcttt gaaattggag aaggtatcgg gtccgaatgg caatcgtcaa 4801 tgtcaaccat ttcctcaagg aagtcgagtc aacagatctc aaaatcgacg caatttcatc 4861 ctcagagctt tacaaagatg caaccttttt taaacctgac gttctcaatt gcattaaaag 4921 atttgagtca aatatcaagg tctcctccag atccggtgac ggcctcgtct tgtcagactt 4981 caaactcctt gacgacactg agattgattc aatcaggaaa aggagcaaca agtacaagta 5041 cttgcactat ggggtcatcc tggttggaat taaagcaatg ttgccaaatt tcagaggcat 5101 ggaggggaga gtcattgttt acgatggagc ctgcctggat ccagaaagag gtcacatatg 5161 ttcgtacctc ttcaagtttg aatctgattg ctgctatttt ggtctcagac ctgagcactg 5221 cctgtccacc actgatgtca acttggcaaa aaggtttagg ttccgtgtgg attttgattg 5281 tccacagtat gagcaggaca ctgagctgtt cgctcttgat attggtgtgg cttacagatg 5341 cgttaattca gcccgattct tggaaaccaa aactggagac tcaaggtggg cttcacaagc 5401 cattagtggc tgtgaagcac ttaagttcaa tgaagagatc aaaatggcaa ttctggacca 5461 taagtctcca ttgttcttgg aagaaggtgc accaaacgtg cacattaaaa aaaggatgtt 5521 cagaggtgac aaagttagaa ggtcacgctc tatctccgcc aaaagggggc caaattcaga 5581 attgcaggga aagagaggat ttaggtccct ctcagctaga attgaaagat ttggaaaaaa 5641 tgagtttgga agacgtgctt caacaggcga ggcgccaccg ggtaggagtg tatctatgga 5701 aaactcacat agacccggcg aaggaactta tgacggttcc tccccctgaa ggattcaagg 5761 aaggtgaaag ctttgaaggc aaagagcttt accttcttct ttgcaatcat tattgtaaat 5821 atttattcgg taatattgct gttttcgggt cgtctgataa gacccagttt cccgctgtcg 5881 gatttgatac ccctccggtt cattacaatt tgacaacgat cccaaaggaa ggtgaaactg 5941 aagaacaaaa gaagaccaga gagggttcat ctggtgaaaa aacgaaaatt tggagaatcg 6001 acttgtcaaa tgtcgtacct gaattgaaaa cctttgctgc cacttcgagg cagaactctt 6061 tgaacgaatg tacgttcagg aagctttgtg agccatttgc cgacttggct cgcgaatttc 6121 ttcatgaaag gtggtcaaga ggattggcta ccaacatata caagaaatgg cccaaagctt 6181 tcgaaaaaag cccgtgggtg gcatttgact ttgccaccgg tctcaaaatg aatcgtctaa 6241 cacctgatga aaaacaggtg attgatagga tgaccaaaag gctttttcgt actgaaggac 6301 aaaaaggggt tttcgaggca ggttcagaga gtaatctgga actggagggt tagaagtcgt 6361 atcaaattcc gcaaacttgg tcgcggtctt gcaggttgac atgcctgcct ttatacgtaa 6421 ataaagggtt cacccggttt tctgtgcatt tccgggttag tgtggttttt ctagagtcta 6481 gagtttgtcc attct //