LOCUS KR106996 6460 bp RNA linear VRL 29-SEP-2015 DEFINITION Apple stem grooving virus isolate ASGV_kfp, complete genome. ACCESSION KR106996 VERSION KR106996.1 KEYWORDS . SOURCE Apple stem grooving virus ORGANISM Apple stem grooving virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Capillovirus. REFERENCE 1 (bases 1 to 6460) AUTHORS Sun,X. and Niu,J. TITLE Identification and analysis of an apple stem groove virus complete genomic sequence from Korla fragrant pear JOURNAL Unpublished REFERENCE 2 (bases 1 to 6460) AUTHORS Sun,X. and Niu,J. TITLE Direct Submission JOURNAL Submitted (14-APR-2015) Department of Horticulture, College of Agriculture, Shihezi University, Xiangyang Street, Shihezi, Xinjiang 832000, China COMMENT ##Assembly-Data-START## Assembly Method :: Trinity with min_kmer_cov set to 2 by v. v. 18-JULY-2014 Assembly Name :: comp53156_c0 Coverage :: 100% Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6460 /mol_type="genomic RNA" /country="China" /isolation_source="flower" /collection_date="10-Apr-2014" /host="Korla fragrant pear" /db_xref="taxon:28347" /isolate="ASGV_kfp" /organism="Apple stem grooving virus" CDS 29..6313 /codon_start=1 /protein_id="ALF38090.1" /translation="MAFTYRNPLEIAINKLPSKQSDQLLALTTDEIEKTLEVTNRFFS FSITPEDQELLTKRGLTLAPIGFKSHSHPISKMIENHLLYICVPSLLSSFRSVAFFSL RENKVNSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDISFSSFRDRVLGLRDDCL KRNKFPKVLFMHDELHFLSPFDMAFLFETIPELDRVVATTVFPIELLFGDKVSKEPRV YTYKVHGSSFSFYPDGVASECYEQNLANSKWPFSCSGIQWANRKIRVTKLQSLFAHHI FSFDRGRACNDFNHFDKPSCLLSSEMRLLTKRFDTAVINRSTVSSLSTYMACLKTANA ASAVAKLRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHF IAASFFEPTEFHLNMRKLLNDLATKGIEVPLSVIQLDKVNFIETRFHARMFDIASVIG VNLDLLGKRFDFEYQSEAYFSENGFLWMPSKNNPERNWVLNSGSVKIDYGKIVRARRY RLKRDFLDMIARGLKPRCQLFIEWKERSGQHPLMNVAEQVVDVPESSNAKMSTEDGQG FEGSIPIDLINCFEPEEVKLPKRKRKNDCVFKAISSHLGIEVMDLLNFLVNEDISDEL LDCIEEDKGLSHEMIEEVLVTKGLSMVYTSDFKEMAVLNRKYGVNGKIYCTIKGNHCE LSSKESFVRLLKEGGEAQMSNENLNADSMFDLGKFVHNRERAVKLAKSLARGTTGLMN EFDPTFYRKVAELSELFPENFSSVVGLRLGFAGSGKTHKVLQWINYTPNVKRMFISPR RMLADEVEVQLKGTSCQVCTWETALKKIDGTFMEVFIDEIGLYPPGYLTLLQMCAYRR IVKGQSEKILKGKLEELSKTCLNLRCFGDPLQLRYHSAEDTNLLDKHHEIDLMIKTIK HKYLLQGYRFGSWFRSLIDMPTKVDDSELSIKFFADISSVKQDDYGLILVARREDKGV FAGRIPVATVSESQGMTIQKRVLICLDQNLFAGGANAAIVAITRSKTGFDFILKGNSL KEIQRLSQKTIWQFIIEKKQIPMERIVNMNPGASFYESPLDVGNSSIQDKASHDLLIM PFINLAEEEVDPEEVVGDVVEPVEWFKCHIPVFDTDPMLAEIFERVAAKEKREFQSIL GMSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIRKSNWRREKSKF EEFEQQGKELLAEFLSMLPNEFEVKIKDIENGERSFIEKRKLKSEKMWANHSERSDID WKLDHVFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFMRSCG ESYYIHSGKNFFCLDSFVTKNAAIFDGFSIESDYTAFDSSQDHVVLAFEMALLQHLGV SKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRKHRI LFAGDDMCSLSSLRRRRGERATRLLKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKL LWARIKMMSERQLLKKCADNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNS KLLTGLSKSLIFEIGEGIGSKWQLSMSTTSSRKLNLQTSRSMPSLHRSCIRMPPFSNL MCLIASSALNPMSKCLQGQAMDLFCPTSNSLTTQKSTPLERRVTSTSIYTMGSFWLES RQCCLISGAWKVGSLCMTAHVWIQREVTSAPIFSDLNLTAATLGLDQSIVCPQLMPTW QRDSGLGWILTVLNTSKTLNYSHLISELPTDVSIQLVFWKQRQVIRGGLHRRSVDVKH SSSMKKSRWLSWITNLHCFLRKVHQMCTLRRGCLGVTRSGGHALFLPKGGQTQNHRKR EDLGPSQLESKDLQKMSLEDVLQLARRHRVGVYLWKTHIDPGKELLTAPPPESFKEGE SFEGRELYLLLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYNLTLTPKDGETE EQKKAREGMSGEKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLARE FLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNKLTPDEKQVIDRMTKRLFR TEGQKGVFEAGSESNLELEG" /product="polyprotein" gene 4747..5709 /gene="MP" CDS 4747..5709 /codon_start=1 /protein_id="ALF38088.1" /gene="MP" /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIK RFESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNF RGMEGRVIVYDGACLDPERGHICSYLFRFESDCCYFGLRPEHCLSTTDANLAKRFRFR VDFDCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEI KMAILDHKSPLFLEEGAPNVHIEKRMFRGDKVRRSRSISAKRGPNSKPQEKRGFRSLS ARIERFAENEFGRRTSTSEAPPGRSVSVEDPYRPGKGTSDGSSP" /product="movement protein" gene complement(5966..6085) /gene="CP" CDS complement(5966..6085) /codon_start=1 /protein_id="ALF38089.1" /gene="CP" /translation="MKKFTSQISKWLTKLSERTFVQRVLPRSGSKGFQFRYYI" /product="coat protein" ORIGIN 1 cagcgcttaa tttccgcgct ttacgtcaat ggcttttact tacagaaacc ctctagaaat 61 tgcaatcaac aaacttccca gcaagcaatc tgatcaattg cttgccttga ccacagacga 121 gatagaaaag accttagaag tcacaaaccg cttcttctct ttttctatca caccagaaga 181 tcaagaattg ttgaccaaac gtgggttaac acttgcacct attgggttca aatctcactc 241 ccatccaata tccaaaatga ttgaaaatca ccttctgtac atatgtgtgc cctctctgct 301 ttcctctttc agatctgtgg ctttcttttc ccttagagaa aacaaggtca attcctttct 361 gaaaatgcat tcggttttct cacatggaaa aatcaagtct cttggaatgt acaatgccat 421 cattgatggt aaggataagt ataggtatgg agatatctct ttttcttctt ttagagatag 481 agttttgggt ttaagagatg attgcttaaa acgtaataaa tttccaaaag ttcttttcat 541 gcatgatgag ctgcactttc ttagcccatt tgatatggct ttcctctttg aaacgatccc 601 cgagcttgat agagtggttg ctaccacagt cttccccatt gagttgcttt ttggggacaa 661 agtttctaag gagccaaggg tttacactta caaggttcat ggttcttctt tttccttcta 721 cccagatggg gtggcttctg agtgctatga acaaaatctg gcgaactcaa agtggccctt 781 ttcttgcagt ggcattcaat gggccaatcg aaaaatcagg gtgacaaagc tccaaagcct 841 ttttgcacat cacatctttt cttttgacag gggaagggct tgtaatgact tcaaccactt 901 cgacaagcct agctgcctac tctcaagtga gatgagacta ttgaccaagc gttttgacac 961 tgcagttatc aataggagta cggtttcatc tctcagcact tacatggcat gtttaaagac 1021 agcaaacgcg gcttcagccg tggccaagtt gcgacaactt gaaaagaggg atctataccc 1081 ggatgagctg aactttgttt actcctttgg ggagcacttt aagaattttg gcatgagaga 1141 tgatttcgac gtgtctgtgc tccaatgggt taaagataaa ttctgtcaag ttatgcccca 1201 ttttattgcg gccagtttct tcgagcccac tgaatttcac ttgaatatgc gcaaacttct 1261 gaacgacctt gcgacgaaag ggattgaagt tcctctgtct gtaattcagc ttgacaaggt 1321 caactttatc gaaacacgat ttcatgctag gatgtttgac attgcatctg ttattggagt 1381 caatttggat cttttgggca aaagattcga ttttgaatat caaagtgaag catacttttc 1441 tgaaaatggc tttttgtgga tgccatctaa gaataaccca gagcgaaatt gggttttaaa 1501 ttctgggtct gttaaaattg attatggaaa aatagtgagg gcaagaagat acagacttaa 1561 gagagacttt cttgatatga ttgccagggg tttgaagcca agatgccagc tttttattga 1621 atggaaagaa aggtcaggcc aacatcctct catgaatgtg gccgaacagg ttgttgacgt 1681 tcccgaaagt agcaatgcta aaatgtcaac tgaggatggg caaggctttg aaggttcaat 1741 tcccattgat cttatcaatt gttttgagcc agaggaggtg aagttgccta agcgtaaacg 1801 gaagaatgac tgtgttttta aggccatctc cagtcatcta ggaatcgagg tcatggatct 1861 tctaaatttt ctagtaaatg aagacatttc agatgaactg ctggactgca ttgaggagga 1921 taaggggctg tcacatgaga tgatagaaga ggttctcgtt acaaaggggc tctctatggt 1981 ttatacttca gacttcaagg agatggctgt tctgaacagg aaatatggag tcaatggaaa 2041 aatttattgc accatcaaag ggaaccattg tgaactcagt tcaaaggagt cattcgtgag 2101 gcttttaaaa gagggtggag aggcccaaat gtcaaatgaa aatttgaatg ctgattcaat 2161 gttcgaccta ggcaagtttg tgcacaatag ggagcgcgcc gtcaaattgg ctaaatcttt 2221 ggcaagaggt acaactggac ttatgaacga atttgaccca accttttaca ggaaagttgc 2281 cgagttgtct gagctttttc cagaaaattt tagttcggtg gtgggtctca gacttggctt 2341 tgcaggctct ggcaagaccc ataaggtgct tcaatggata aattacacac caaacgttaa 2401 gagaatgttt ataagtccaa ggaggatgtt ggctgatgaa gttgaagtgc agttgaaagg 2461 gacctcatgt caggtgtgca cttgggagac tgctttgaaa aaaattgatg gaacttttat 2521 ggaggtcttt attgatgaga taggccttta tcctcctggt tatctgacac ttttgcagat 2581 gtgtgcttat aggagaatcg ttaaagggca gagtgaaaaa atccttaaag gaaagcttga 2641 agagctgtct aagacctgcc tgaatttgag atgttttgga gacccactgc agctaaggta 2701 ccactctgct gaagacacaa acctattgga caaacatcat gagattgatt tgatgatcaa 2761 gacaatcaaa cacaaatacc tacttcaagg gtataggttc ggttcatggt tcagatcttt 2821 gattgacatg cccaccaaag tggatgactc agagctaagt atcaaatttt ttgcagatat 2881 ttcttcagtt aaacaggatg attatggctt gatcctcgtg gcaagaaggg aagacaaagg 2941 ggtttttgca gggaggatcc ccgttgccac tgttagtgaa tctcagggta tgaccattca 3001 gaaaagagtt ctgatctgcc tcgaccaaaa tctatttgct ggtggtgcaa atgcagcaat 3061 tgtggcaata accaggtcga aaactggatt tgacttcatt ctaaaaggaa actccctgaa 3121 agaaatacaa agattgtctc aaaaaaccat ttggcagttc atcattgaaa agaagcagat 3181 ccctatggag agaatcgtta acatgaatcc gggtgccagc ttttatgaga gtcccttaga 3241 tgtcggcaat tcatcaattc aggacaaagc ttcacatgat cttttaatca tgcctttcat 3301 aaacttggct gaagaggaag ttgacccgga agaagttgtt ggggatgtcg ttgagccagt 3361 tgagtggttc aaatgccata ttcccgtgtt tgacaccgac cctatgttgg ctgaaatttt 3421 tgaaagggtt gcagcaaaag agaagaggga atttcagtca atccttggta tgtcaaatca 3481 atttctggac atggaaaaaa atgggtgcaa gatagacata ttgccgtttg caaggcaaaa 3541 tgtctttcca caccaccagg cgtctgatga cgtgaccttc tgggcagggg ttcaaaaaag 3601 gataaggaaa tccaactgga ggagagagaa aagcaaattt gaggagtttg agcagcaggg 3661 gaaggaactt ttagctgagt ttctatcaat gttgcccaac gaattcgaag tcaaaattaa 3721 ggacattgaa aatggcgaaa gaagctttat tgaaaaaagg aagttgaagt cagaaaaaat 3781 gtgggccaat cactctgaaa gatcagacat tgattggaag ttggatcatg ttttcctctt 3841 tatgaaatcc caatattgca ccaaagaagg aaagatgttc actgaagcca aggctggcca 3901 aactttagct tgttttcaac atattgtact attcaggttt ggtcctatgt taagggcaat 3961 tgagagtgct ttcatgagga gctgtggaga gtcatattac atacattccg gaaaaaattt 4021 tttctgtctt gatagctttg tgaccaaaaa tgcagccatt tttgatggct tttcaattga 4081 gtctgactac actgcttttg actcttcaca ggatcatgtt gttttagctt ttgagatggc 4141 actcctccaa cacctagggg tttcaaagga atttcagctg gattacctga gattgaagtt 4201 aaccttggga tgcagacttg gctcactggc cataatgaga tttacaggtg aattttgcac 4261 ttttctcttc aacacctttg caaatatgct gtttactcag ttaaaataca aaattgaccc 4321 tagaaaacat aggatcttat ttgctggtga tgatatgtgt tctttgagct ctttgagaag 4381 gagaagggga gaaagggcca caaggctttt gaaaagtttt tcgctgaccg ctgttgagga 4441 agtgaggaag ttcccaatgt tttgcgggtg gtacttaagt ccttatggca ttatcaaatc 4501 acccaaactc ctctgggcaa ggatcaaaat gatgagtgag aggcaacttc tgaagaaatg 4561 tgcagataat tacttatttg aggctatatt tgcctacaga ttaggtgaga ggctctacac 4621 aattctgaaa gaagaggact ttgagtatca ttacctagtg ataaggttct ttgtcaagaa 4681 ttcaaagctg ctaacagggt tgagcaagag cctgattttt gaaattggcg aagggatcgg 4741 gtcaaaatgg caattgtcaa tgtcaaccac ttcctcaagg aagttgaatc tacagacctc 4801 aagatcgatg ccatctcttc atcggagctg tataaggatg ccaccttttt caaacctgat 4861 gtgcttaatt gcatcaagcg ctttgaatcc aatgtcaaag tgtcttcaag gtcaggcgat 4921 ggacttgttt tgtccgactt caaactcctt gacgacacag aaatcgactc cattagaaag 4981 aagagtaaca agtacaagta tctacactat ggggtcattc tggttggaat caaggcaatg 5041 ctgcctaatt tcaggggcat ggaaggtagg gtcattgtgt atgacggcgc atgtttggat 5101 ccagagagag gtcacatctg ctcctatctt ttcagatttg aatctgactg ctgctacttt 5161 gggcttagac cagagcattg tttgtccaca actgatgcca acttggcaaa gagattcagg 5221 tttagggtgg attttgactg tcctcaatac gagcaagaca ctgaattatt cgcacttgat 5281 atcggagttg cctaccgatg tgtcaattca gctcgttttt tggaaacaaa gacaggtgat 5341 tcggggtggg cttcacaggc gatcagtgga tgtgaagcac tcaagttcaa tgaagaaatc 5401 aagatggcta tcctggatca caaatctcca ctgtttcttg aggaaggtgc accaaatgtg 5461 cacattgaga agaggatgtt taggggtgac aaggtcagga ggtcacgctc tatttctgcc 5521 aaaagggggc caaactcaaa accacaggaa aagagaggat ttaggtccct ctcagctaga 5581 atcgaaagat ttgcagaaaa tgagtttgga agacgtactt caactagcga ggcgccaccg 5641 ggtaggagtg tatctgtgga agacccatat agacccggga aaggaacttc tgacggctcc 5701 tccccctgaa agttttaagg aaggtgaaag ctttgaaggc agagagcttt accttcttct 5761 ctgcaatcat tactgtaaat atttgtttgg taatattgct gtttttgggt cttctgacaa 5821 gacccagttt cccgctgttg gatttgatac ccctccggtt cattataatc taacattaac 5881 cccaaaagat ggggaaactg aagagcaaaa gaaggccaga gaggggatgt ctggcgagaa 5941 aactaaaatt tggaggatcg acttgtcaaa tgtagtacct gaattgaaaa cctttgctgc 6001 cacttctagg cagaactctt tgaacgaatg tacgttcaga aagctttgtg agccatttgc 6061 tgatttggct cgtgaatttc ttcatgaaag gtggtcaaaa ggtttggcca cgaacattta 6121 caagaaatgg cccaaagctt ttgagaaaag tccgtgggtg gcttttgact ttgccactgg 6181 tctgaaaatg aacaaattga cacctgatga aaagcaggtg attgatagaa tgaccaaacg 6241 gctttttcgt actgaaggac agaaaggggt tttcgaggca ggttcggaga gtaacttgga 6301 actggagggt tagaagtcgt ttaaaattcc gcaaacttgg tcgcggtctt gcaggttgac 6361 atgcctgcct ttatacttaa ataaagggtt cacccggttt tctgagcatt tccgggttag 6421 tgtggttttt ctagagtcta gagtttgtcc gctctaaaaa //