LOCUS LC143387 6497 bp RNA linear VRL 06-APR-2016 DEFINITION Apple stem grooving virus genomic RNA, complete genome, isolate: FKSS2. ACCESSION LC143387 VERSION LC143387.1 KEYWORDS . SOURCE Apple stem grooving virus ORGANISM Apple stem grooving virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Capillovirus. REFERENCE 1 AUTHORS Nakazono-Nagaoka,E. TITLE Nucleotide sequence of the genomic RNA of Apple stem grooving virus isolated from Yuzu JOURNAL Unpublished REFERENCE 2 (bases 1 to 6497) AUTHORS Nakazono-Nagaoka,E., Fujikawa,T. and Iwanami,T. TITLE Direct Submission JOURNAL Submitted (31-MAR-2016) Contact:Eiko Nakazono-Nagaoka NARO, Institute of Fruit Tree Science; Fujimoto 2-1, Tsukuba, Ibaraki 305-8605, Japan FEATURES Location/Qualifiers source 1..6497 /mol_type="genomic RNA" /country="Japan: Fukushima" /collection_date="2014" /host="Citrus junos" /db_xref="taxon:28347" /isolate="FKSS2" /organism="Apple stem grooving virus" 5'UTR 1..36 CDS 37..6354 /codon_start=1 /protein_id="BAU79371.1" /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFS FSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICIPSLLSSFRSVAFFSL RENKVNNFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGEVSFTSFRDRVIGLRDQCL TRNKFPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTIFPIELLFNDKVSKEPRV YTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHV FSFDRGRACNEFNHFDKPSCLLADEMRLLTKRFDSAVINRSTVSSLSTYMACLKTANA ASAVAKLRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHF IAASFFEPTEFHLNMRKLLNDLATKGIEVPLSVIVLDNVNFIETRFHARMFDIAQAIG VDLNLLGRRFDYDTESETYFSENGHVFMPSKSNPDRNWILNSGSLKIDYSKLVKARRF RLRRDFLDPISKGDSPRRQLFLESASDPKSSPGVPGSGEIREAESLVNDESCQSPREL CASMSTEDGQGFEGSIPIDLINCFEPEEVKCPRRKRKNDCVFRAISAHLGIETQDLLN FLVNEDISEELLDCIDEDKGLSHEMIEEVLITKGLSMVYTSDFKEMAVLNRKYGVNGK MYCTIKGNHCELSSKECFIRLLKEGGEAQMSNENLNADSMFDLGKFVHNRERAVKLAK SMARGTTGLLNSFDPAFCKSMVTLSELFPENFSSIVGLRLGFAGSGKTHKVLQWINYT PSVKRMFISPRRMLADEVEVQLKGTACQVHTWETALKKIDGTFMEIFVDEIGLYPPGY LTLLQMCAFRKIVKGQSERILKGKLSELSKTCLNMRCFGDPLQLRYYSAEDTNLLDKT HEIDLLTKTIKHKYLLQGYRFGQWFQELINMPTRVDGSKFSRKFFADISSVKTEDYGL ILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKV GFDFILKGNSLKEVQKMAQKTVWQFIIEGKSIPMERIVNMNPGASFYESPLDVGNSSI QDKASHDLFIMPFINLAEEEVDPEEVVGDVIQPVEWFKCHVPVFDTDPMLAEIFDRVA AKEKREFQSILGFSNQFLDMEKNGCKIDILPFARQNVFPHHQSSDDVTFWAGVQKRIR KSNWRREKTKFEEFESQGKELLHEFISMLPFEFKVNIKDIEDGEKSFLEKRKLKSEKM WANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR AIESAFLRSCGDSYYIHSGKNFFCLDSFVTRNAHVFDGFSIESDYTAFDSSQDHVILA FEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQL KYKIDPRKHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYL SPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYH YLVIRFFVKNSKLLTGLSKSLIFEIGEGIGSEWRSSMSTISSRRSSQQTLRLTQSHPQ NFTKMQPFSSRMCSIALKDLSQMSKFPPDLVMDSSCQISSCLMTLKSTQSGKRATSTS TCIMESSWLESKQCCQTSEAWKEGSLCMMEPALIRKEAIYARICLSLSLTAVTSVLDL NTAYPPQMPTWRRDLDFVWTLIAHSMNRTLSCLLLILAWPTDASIQLVSWRPRLEIQG GPRRLLAAVRHSNSMKKSKWQFWIISLHYFWRKVLQMYILKRDCSEVTKLEGHARFLQ KGGQTRNCRKREDLGPSQLELKDSEKMSLEDVLQQARRHRVGVYLWKTHIDPAKELLT VPPPEGFKEGESFEGKELYLLLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYN LTTTPKEGETEERKKAREGSSGEKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRK LCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQ VIDRMTKRLFRTEGQKGVFEAGSESNLELEG" /product="polyprotein" /note="ORF 1" CDS 4788..5750 /codon_start=1 /protein_id="BAU79372.1" /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIK RFESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNF RGMEGRVIVYDGACLDPERGHICSYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFR VDFDCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEI KMAILDHKSPLFLEEGAPNVHIEKRLFRGDKIRRSRSISAKRGPNSKLQEKRGFRSLS ARIERFGENEFGRRASTSEAPPGRSVSLEDAYRPGKGTSDGSSP" /product="putative movement protein" /note="ORF 2" 3'UTR 6355..6496 ORIGIN 1 aaatttaaca gcgcttaatt tccgcgcttt acgtcaatgg ctttcactta cagaaatcca 61 ctagaaattg caatcaacaa acttccaagc aagcagtctg atcaattgct ttccttgacc 121 acagacgaga ttgaaaagac cttagaagta acaaatcgct tcttttcttt ttcaatcacc 181 ccagaagatc aagaattgtt gaccaaacat ggtttaacac ttgcgcctat cggatttaag 241 tcacattccc atccaatatc caaaatgata gagaatcatc tcttgtacat atgtattcct 301 agtcttctgt cttcttttag gtcagttgcc ttcttttccc ttagagagaa caaagtcaat 361 aattttctca aaatgcattc tgtgttttca cacggaaaga tcaaatctct aggaatgtac 421 aatgcaataa ttgatgggaa ggataagtat aggtatggtg aggtctcttt cacctccttc 481 agagatagag tgataggtct tagagatcaa tgccttacac gtaataaatt tccaaaggtg 541 ttattccttc atgatgaatt gcactttctt agcccctttg atatggcttt tctgtttgaa 601 acaattccag aaatagacag ggttgttgca accaccatat ttccgattga attgttattt 661 aatgacaagg tctctaagga gcctagagtt tacacctata aggttcatgg atcttccttt 721 tcattttacc ctgacggtgt ggcctctgaa tgttatgaac aaaatttggc aaattcgaaa 781 tggcctttca cctgtagtgg cattcaatgg gccaatagga agataagggt gactaagttg 841 cagagcttgt ttgctcacca tgttttttca tttgacaggg gcagggcctg caatgaattt 901 aaccatttcg ataaaccaag ttgcctgctc gcagatgaaa tgcgtctttt gacaaaaagg 961 tttgattctg cagtcatcaa tcggagtaca gtttcctctc tcagcactta catggcttgc 1021 ctcaaaactg cgaacgcagc ttcagcagtt gctaaattga ggcagttgga gaagagagat 1081 ctctatccag atgagctgaa ttttgtttac tctttcgggg aacatttcaa gaattttgga 1141 atgagagatg actttgatgt gtcggttctc caatgggtta aagacaaatt ttgtcaagtt 1201 atgcctcact tcattgctgc cagctttttt gagccaacag agtttcacct taatatgcgg 1261 aaattattga atgacctggc caccaagggg atagaggttc cactttctgt cattgtgtta 1321 gacaatgtca attttatcga aaccaggttc catgccagga tgtttgacat cgcgcaggct 1381 attggggttg acttgaactt acttgggcgc agatttgact atgatactga aagtgagaca 1441 tatttctcag aaaatggtca tgtcttcatg ccttccaaat cgaatccaga caggaattgg 1501 attctgaact ctggctcttt aaagattgac tactctaaat tggtcaaggc caggagattt 1561 agattgagga gagatttcct ggatcccata tctaaaggtg attctcccag gaggcaactc 1621 ttcttggaat cagccagtga ccccaagtca agccctgggg tccccggaag tggtgaaatt 1681 agagaggcag aatcattggt caatgacgag agctgccagt caccaagaga gctttgtgcg 1741 tcaatgtcca cagaggacgg ccaaggtttc gaaggctcaa tcccaattga tctaatcaat 1801 tgctttgaac cagaggaagt taaatgccca agaagaaaga ggaagaatga ttgcgttttt 1861 agggcgattt ctgcacactt gggaattgaa acccaagact tgttaaattt cctcgttaat 1921 gaggatatat ctgaagaact attggactgc attgatgaag acaaaggact ctcacacgaa 1981 atgattgagg aggtattaat cacgaaaggt ctttcaatgg tttatacttc agacttcaaa 2041 gagatggcag tcctcaacag aaaatatggt gtgaatggca aaatgtactg caccatcaaa 2101 ggcaaccatt gtgaattgag ctcaaaagaa tgttttatca gactgctaaa ggaaggtggt 2161 gaagctcaaa tgtctaatga aaacttaaat gctgactcca tgtttgacct tggaaagttt 2221 gtacataaca gggagagggc cgtcaaattg gcaaaatcaa tggcgagagg tactacaggt 2281 ctcttgaatt cttttgatcc ggccttctgc aaaagcatgg tcactctttc agagttgttc 2341 cctgagaact tttcatccat tgttgggctg agattgggat ttgctggctc agggaagact 2401 cacaaagtgc ttcaatggat caactacacg ccaagtgtca aaagaatgtt tataagcccg 2461 aggaggatgc tagctgatga agttgaggtc cagcttaaag ggacagcctg tcaagtgcac 2521 acttgggaga ccgccttgaa gaagattgat ggaaccttca tggagatttt tgttgatgaa 2581 ataggtctgt acccacctgg gtaccttaca ttgttacaaa tgtgtgcttt taggaagatt 2641 gttaaaggac agagtgagag gatcttgaaa ggtaaactca gtgaactgtc aaaaacctgt 2701 ctgaacatga ggtgttttgg tgacccatta caattgagat actactctgc tgaggataca 2761 aatcttctgg acaaaacaca tgagatcgac cttttgacta agacaatcaa gcacaaatac 2821 cttctccagg ggtacagatt tggccaatgg tttcaagagc tcataaacat gccaactagg 2881 gtggatggct caaagttctc aagaaagttc tttgcggaca tttctagtgt caagactgaa 2941 gattacgggc tcattctcgt tgccaaaagg gaggacaaag gtgtttttgc tgggagagtc 3001 ccagtagcca cagttagtga gtctcaaggg atgacaataa gcaaaagagt attgatatgt 3061 ctggatcaaa acctctttgc tggaggagcc aatgctgcca ttgttgcaat cacaaggtcg 3121 aaagttggat ttgactttat cctcaaagga aattcactaa aggaagtgca gaagatggcc 3181 caaaaaaccg tttggcaatt cattattgag ggtaaatcca ttccaatgga gagaatagtc 3241 aacatgaatc ctggagccag cttctatgaa agccccttag acgttggaaa ttcgtctatt 3301 caggacaaag cctcccatga tttgtttata atgcctttca taaatttggc agaagaagag 3361 gttgacccag aggaagttgt tggggatgtg atacagcctg ttgaatggtt taaatgccat 3421 gtacctgtct ttgatacaga tccaatgctg gcagagatat tcgacagagt agctgcaaaa 3481 gaaaagagag agtttcaatc tatattgggt ttctcaaacc aatttttgga tatggagaaa 3541 aacgggtgca agattgacat acttcccttt gctaggcaaa acgtttttcc acaccatcaa 3601 tcctcagatg atgtcacttt ttgggcaggt gttcaaaaga ggataagaaa gtccaattgg 3661 aggcgtgaaa aaacaaaatt tgaagaattt gagagtcagg ggaaagaact gctccatgag 3721 ttcatttcaa tgttgccttt tgaattcaag gtcaacatta aagacattga agatggagaa 3781 aaaagtttcc tagaaaaaag aaaattgaag tcagagaaga tgtgggcgaa tcattcagaa 3841 aggtctgaca tcgattggaa acttgaccat gcctttcttt ttatgaaatc acagtattgc 3901 acgaaggaag ggaagatgtt caccgaagcg aaagccggcc aaactttagc ctgcttccag 3961 cacattgtct tattcagatt cggacctatg cttagagcaa ttgagagtgc ctttttgagg 4021 agctgtggag attcatacta catacactct ggaaaaaact ttttctgcct ggacagcttt 4081 gtgacgagaa atgcacatgt ttttgatgga ttctcaatag agtccgacta cactgctttc 4141 gattcatccc aggaccacgt cattttggcc tttgagatgg cgctattgca atatttgggt 4201 gtatccaaag aatttcagct tgactatcta aggttgaagt taactcttgg ttgccgactt 4261 gggtcattag caataatgag attcactggg gaattttgca cctttctgtt taacacattt 4321 gccaacatgc ttttcactca gttgaagtac aaaatagacc cacggaaaca tagaatctta 4381 tttgcagggg atgacatgtg ttccttgagc tctctcaaaa ggagaagagg ggaaagagca 4441 acaaggttga tgaagagctt ttctctaact gcggtggagg aagtgagaaa attccctatg 4501 ttctgtggat ggtatttgag tccatatgga attatcaaat ctccaaaatt gttatgggcc 4561 agaattaaga tgatgagtga aaggcagctc ctgaaagaat gcgttgacaa ctatctgttt 4621 gaggcaatat ttgcctacag gttaggtgag aggctgtaca caattttgaa agaagaagac 4681 tttgaatatc attatcttgt tataaggttc tttgtcaaga attcaaaact gctaacgggt 4741 ttgagcaaaa gcttgatttt cgaaattgga gaaggaattg ggtctgaatg gcgatcgtca 4801 atgtcaacca tttcctcaag gaggtcgagt caacagacct taagattgac gcaatctcat 4861 cctcagaact ttacaaagat gcaacctttt tcaagccgga tgtgctcaat tgcattaaaa 4921 gatttgagtc aaatgtcaaa gtttcctcca gatctggtga tggactcgtc ttgtcagatt 4981 tcaagttgct tgatgacact gaaatcgact caatcaggaa aaagagcaac aagtacaagt 5041 acctgcatta tggagtcatc ctggttggaa tcaaagcaat gctgccaaac ttcagaggca 5101 tggaaggaag ggtcattgtg tatgatggag cctgccttga tccggaaaga ggccatatat 5161 gctcgtattt gtttaagttt gagtctgact gctgttactt cggtcttaga cctgaacact 5221 gcttatccac cacagatgcc aacttggcga agagatttag atttcgtgtg gactttgatt 5281 gcccacagta tgaacaggac actgagctgt ttgctcttga tattggcgtg gcctacagat 5341 gcgtcaattc agctcgtttc ttggagacca agactggaga ttcagggtgg gcctcgcagg 5401 ctattagcgg ctgtgaggca ctcaaattca atgaagaaat caaaatggca attttggatc 5461 ataagtctcc actatttctg gaggaaggtg ctccaaatgt acatattgaa aagagattgt 5521 tcagaggtga caaaattaga aggtcacgct cgatttctgc aaaaaggggg ccaaactcga 5581 aactgcagga aaagagagga tttaggtccc tctcagctag aattgaaaga ttcggagaaa 5641 atgagtttgg aagacgtgct tcaacaagcg aggcgccacc gggtaggagt gtatctttgg 5701 aagacgcata tagacccggc aaaggaactt ctgacggttc ctccccctga agggtttaag 5761 gaaggtgaaa gctttgaagg caaagagctt taccttcttc tttgcaacca ctattgtaaa 5821 tatttatttg gtaatattgc tgttttcggg tcatctgata agacccagtt ccctgctgtt 5881 ggatttgata cccccccggt tcattacaat ttgacaacga ccccgaaaga aggggaaact 5941 gaagagcgaa agaaggccag agagggttcg tctggcgaaa aaacaaaaat ttggagaatc 6001 gacttgtcaa atgttgtacc tgaattgaaa acctttgctg ccacttctag gcagaactct 6061 ttgaatgaat gtacattcag aaagctttgt gagccattcg ctgatttggc ccgtgaattt 6121 cttcatgaaa ggtggtcgaa aggattggcc accaacattt ataagaaatg gcccaaagct 6181 tttgaaaaaa gcccttgggt ggcatttgat tttgccaccg gtctaaaaat gaaccgttta 6241 acacctgatg aaaaacaggt gattgacagg atgaccaaaa ggctttttcg tactgaagga 6301 caaaaagggg ttttcgaggc aggttcggag agtaacctgg aactggaggg ttaggagtcg 6361 tgtgaaattc cgcaaacttg gtcgcggtct tgcaggttga catgcctgcc tttatactta 6421 aataaagggt tcacccggtt ttctgtgcat ttccgggtta gtgtggtttt tctagagtct 6481 agagtttgtc cactcta //