LOCUS KU500890 6454 bp RNA linear VRL 06-JUL-2017 DEFINITION Apple stem grooving virus isolate Fuji polyprotein and movement protein genes, complete cds. ACCESSION KU500890 VERSION KU500890.1 KEYWORDS . SOURCE Apple stem grooving virus ORGANISM Apple stem grooving virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Capillovirus. REFERENCE 1 (bases 1 to 6454) AUTHORS Cho,W.K., Jo,Y. and Choi,H. TITLE Direct Submission JOURNAL Submitted (06-JAN-2016) Department of Agricultural Biotechnology, Seoul National University, 5103-ho, 200-dong, Daehak-dong, Kwanak-gu, Seoul 151-921, Korea COMMENT ##Assembly-Data-START## Assembly Method :: Trinity RNA-Seq v. 2.0.6 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6454 /mol_type="genomic RNA" /country="China" /collection_date="22-Jul-2015" /host="Malus domestica" /db_xref="taxon:28347" /isolate="Fuji" /organism="Apple stem grooving virus" CDS 26..6343 /codon_start=1 /protein_id="ANP21803.1" /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFS FSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICIPSLLSSFKSVAFFSL RENKVDSFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCL TRNKFPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRV YTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHV FSFDRGRACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANA ASAVAKLRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSILQWVKDKFCQVMPHF IAASFFEPTEFHLNMRKLLNDLATRGIEVPLSVIILDKVNFIETRFHARMFDIAQAIG VNLDLLGKRFDYEAESEEYFSENGYIFMPSKSNPERNWILNSGSLKIDYSRLVRARRF RLRRDFLDPISKGKSPRKQLFLESMGNIKLNPNAEKGSESGEMKIEGSAENDRPHEVS HTSMETEDGQGFEGSIPVDLINCFEPEEIKLPKRRRKNDCVFKAISAHLGIDSQDLLN FLVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLSMVYTSDFKEMAVLNRKYGVNGK MYCTIKGNHCELSSKECFIRLLKEGGEAQMSNENLNADSLFDLGRFVHNRDRAVKLAK SMARGTTGLLNEFDLEFCKNMVTLSELFPENFSSVVGLRLGFAGSGKTHKVLQWINYT PSVKRMFISPRRMLADEVEPQLKGTACQVHTWETALKKIDGTFMEVFVDEIGLYPPGY LTLLQMCAFRKIVKGQSENFLKGKLLALSKTCLNIRCFGDPLQLRYYSAEDTNLLDKT HDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSRKFFADISSVKTEDYGL ILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKV GFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMERIVNMNPGASFYESPLDVGNSSI QDKASHDLFIMPFINLAEEEVDPEEVAGDVIQPVEWFKCHVPVFDTDPMLAEIFDKVA AKEKREFQSVLGLSNQFLDMEKNGCRIDILPFARQNVFPHHQASDDVTFWAGVQKRIR KSNWRREKSKFEEFESQGKELLQEFISMLPFEFKVNIKDIEDGEKSFLEKRKLKSEKM WANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR AIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILA FEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQL KYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYL SPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYH YLVIRFFVKNSKLLTGLSKSLIFEIGEGIGSKWLSSTSTTSSRRSNLQTSKLMLSHPQ SFTRMQPFSNQTCLIALKDLNQMSRFPLDLVTASSCLISNCSMTLKLIQSGRKATSTN TCTMESSWLGSKQCCQTLKAWKGESLFMMEPAWIRKEATFARIFSSSSLTVATLVSGQ STVCLLQTQIWQKGLDFVWTLIVHNMNKTLSCLLLTLELHTDASTLQGFWKPKLAIQG GLHRQSAAVKHLNLMRKSGWPSWIANPRCFWKKVYQTCTLKRDYSEVTRLEGHAQFPL KGGQTQGCKKREDLGPSQLELKDLEKMSLEDVLQQARRHRVGVYLWKTHIDPAKELLT VPPPEGFKEGESFEGKELYLLLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHFN LTTTPKEGETEEQKKAREGSSGEKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRK LCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQ VIDRMTKRLFRTEGQKGVFEAGSESNLELEG" /product="polyprotein" CDS 4777..5739 /codon_start=1 /protein_id="ANP21804.1" /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIK RFESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNF KGMEGRVIVYDGACLDPERGHICSYLFKFESDCCYFGLRPEHCLSTTDTNLAKRFRFR VDFDCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEI RMAILDRKSPLFLEEGVPNVHIEKRLFRGDKVRRSRSISAKRGPNSRVQEKRGFRSLS ARIERFGKNEFGRRASASEAPPGRSISMEDPHRPGKGTPDSSSP" /product="movement protein" ORIGIN 1 cgcttaattt ccgcgcttta cgtcaatggc tttcacttac agaaaccccc tcgaaattgc 61 aatcaacaaa cttcctagta agcagtctga tcaactgctt tccttaacca ccgacgagat 121 tgaaaagacc ttagaagtga ccaaccgctt cttctctttt tcaatcacac cagaagatca 181 agaattgttg accaagcatg gtctaacact tgcacctata gggtttaagt cacactccca 241 tccaatatcc aaaatgatag aaaatcatct cctgtatata tgtattccga gtcttttatc 301 ctccttcaag tcagttgctt ttttttctct tagggagaac aaagtagaca gctttctcaa 361 gatgcattca gtcttttccc acggaaaaat taaatcttta gggatgtaca atgctataat 421 tgatggaaaa gataaatata ggtatggtga tgtagagttt tcatctttta gggatagagt 481 gattggtctt agagatcaat gccttacacg taataaattt ccaaaagttc tgtttcttca 541 cgacgagttg cactttctaa gtccatttga catggctttc ctatttgaga caatcccaga 601 aattgataga gttgttgcaa ccacagtttt tccaatagaa cttttatttg gggacaaggt 661 ctctaaggaa cccagggttt atacctacaa ggtccatggc tcttcatttt cattttatcc 721 ggatggtgtt gcttctgagt gttacgaaca gaatttggcg aattctaaat ggcccttcac 781 ctgcagtggc atacaatggg ctaacaggaa aattagggta accaagctac agagtctctt 841 cgcccatcat gttttctcat ttgatagagg gagggcttgt aatgaattca atcatttcga 901 caaacctagc tgtctacttg cagaagaaat gcgcctcttg accaaaaggt ttgataaagc 961 agttatcaac agaagcacag tctcttccct cagtacatac atggcttgtc ttaaaactgc 1021 aaatgcggct tcagctgttg ccaagctgag gcagttggag aagagggatc tttacccaga 1081 tgagttgaac tttgtctatt cctttggaga gcatttcaaa aattttggga tgagagatga 1141 ctttgatgtg tcaattctac aatgggtcaa agacaaattc tgccaggtca tgccccactt 1201 catcgccgcc agtttttttg aaccaacaga atttcattta aacatgcgca aattgttgaa 1261 tgatctggcc actagaggaa tagaggtccc cctttctgtg atcatcctgg acaaagtcaa 1321 cttcatagag accagatttc atgccaggat gttcgacata gcacaggcaa tcggggtgaa 1381 tctagattta ctggggaaaa gatttgatta tgaagctgag agtgaagaat acttttcaga 1441 gaacggttac atctttatgc cctctaaatc aaatccggag agaaattgga ttctaaattc 1501 cggttcgctg aaaattgact attcaagatt ggtaagagcc aggaggttta gattgagaag 1561 agatttccta gatcccatat ccaaaggaaa atcccctaga aaacagctct tcttggagtc 1621 aatgggaaac attaaattaa atcccaatgc tgaaaaaggt agcgagagcg gcgaaatgaa 1681 gattgaaggc agtgccgaaa atgaccggcc acatgaggta tcacatactt caatggaaac 1741 cgaggatgga cagggttttg aaggttcaat accagttgat ttaatcaatt gctttgaacc 1801 agaagaaatc aagctcccaa agagaagaag gaaaaatgat tgcgtcttca aggccatctc 1861 tgcacacttg gggattgatt ctcaagattt gttgaatttt ttggtaaatg aagacatatc 1921 agatgaacta cttgattgca ttgaagagga caaaggactg tcacatgaaa tgattgaaga 1981 agttttgatc acaaagggtc tttcaatggt ttatacttct gacttcaaag aaatggcagt 2041 tcttaataga aagtatggag tgaatggcaa gatgtactgc acaattaaag gcaatcactg 2101 cgagctgagt tccaaagagt gcttcatcag attactgaaa gaaggtggtg aagcgcagat 2161 gtcaaatgaa aatctaaatg ctgattcctt gttcgacctt ggaagatttg tgcataacag 2221 agacagagct gtcaagctag caaaatccat ggcaagaggc acaacaggcc tcctgaacga 2281 attcgaccta gaattctgca agaacatggt gaccctttca gagttgtttc ctgaaaactt 2341 ttcttctgtt gtcgggctaa ggcttgggtt tgcgggttct ggtaaaacac ataaggtgct 2401 tcaatggatt aattacactc caagtgttaa aagaatgttt ataagtccaa ggagaatgct 2461 ggcggatgaa gttgaacctc aactcaaagg aacggcctgt caggtgcata catgggagac 2521 cgcactcaaa aaaatcgacg gaacttttat ggaagttttt gttgatgaga taggtttgta 2581 cccgcctgga taccttacac tactgcagat gtgcgctttc agaaagattg ttaaggggca 2641 aagtgaaaat ttcttgaaag gcaaactgtt ggcattgtca aagacttgcc taaacataag 2701 atgttttggt gatccattgc aattaaggta ttactcagct gaagacacca atctattaga 2761 caaaacacat gatattgacc tcatgatcaa gacaatcaag cacaaatatc tttttcaagg 2821 gtacaggttc ggtcagtggt ttcaagaatt ggtgaacatg cccactagag tagatgagtc 2881 gaaattctca aggaagttct ttgcagacat ttcaagtgta aaaactgaag attacggact 2941 catcctagtt gccaagagag aagataaagg tgttttcgct ggaagagttc ctgtagcaac 3001 agtgagtgaa tctcagggaa tgaccattag caaaagggtg ttgatatgtt tggaccagaa 3061 tctttttgcc gggggagcca atgcagccat tgttgcaata acgagatcaa aggtcggctt 3121 tgacttcatc cttaaaggga attcattgaa agaggtacag aggatggcac aaaagacaat 3181 ttggcaattc atcattgaag gaaagtctat tccgatggag aggatagtga atatgaatcc 3241 tggagccagc ttttatgaga gtcctttgga tgttggaaat tcatcaattc aagacaaagc 3301 ttctcatgac ctattcataa tgcctttcat aaatttggct gaggaagaag ttgacccaga 3361 ggaagttgct ggggacgtaa ttcaacctgt tgagtggttc aaatgtcatg tgcctgtctt 3421 cgacacagat ccaatgcttg cggagatttt tgataaggtt gcggcaaaag aaaagaggga 3481 attccagtct gtactgggtc tttcaaatca atttcttgac atggaaaaga atggatgcag 3541 gatagacatc ttgccctttg cgcgacaaaa tgtttttcca catcatcaag cgtctgatga 3601 tgttactttc tgggcaggtg ttcagaaaag gatcagaaaa tcgaactgga gaagggagaa 3661 gtcaaagttt gaggaatttg aaagccaagg aaaagaactt cttcaagaat tcatctcaat 3721 gctgccgttt gaattcaagg tgaatatcaa ggatattgaa gatggagaga agagcttttt 3781 agaaaaaaga aagctgaaat ctgagaaaat gtgggcaaat cattcggaga gatcagacat 3841 tgactggaaa cttgaccacg cctttctctt catgaaatca caatattgca cgaaggaagg 3901 gaagatgttc accgaggcta aagctggcca aactttggct tgcttccaac acatagtcct 3961 atttagattt gggcccatgt tgagagcaat tgaaagtgcc tttttgagaa gctgtggaga 4021 ctcatactac atacactccg ggaaaaactt cttctgcctg gacagctttg tgacaaagaa 4081 tgcaagtgta tttgatggat tttcaattga gtcagactac acggcctttg actcatctca 4141 ggaccacgtc atattggcct ttgaaatggc actattacaa tacctgggcg tgtcaaagga 4201 gtttcagcta gactacctta gactgaaatt gactctcgga tgccgtctcg gatcactagc 4261 aataatgagg ttcacaggag aattttgcac tttcttattc aacacatttg ccaatatgct 4321 gtttactcaa ttgaagtaca agatagaccc aaggaggcat aggattttat ttgctgggga 4381 tgatatgtgt tccttgagct ctcttaaaag aaggagaggg gagagagcga caagattgat 4441 gaagagcttt tccctaactg cagtggaaga ggtgagaaaa tttccaatgt tctgtggatg 4501 gtacttaagt ccatatggta tcatcaaatc tccaaaattg ctgtgggcca ggatcaagat 4561 gatgagtgag agacagcttt tgaaggaatg tgttgataat tacctatttg aggcgatatt 4621 tgcctacaga ttaggtgaga ggctgtacac aattttgaaa gaagaggatt ttgaatacca 4681 ttatcttgtc ataagatttt ttgttaaaaa ttcaaaatta ttaacagggt tgagcaaaag 4741 cttgatattt gaaattgggg agggcatcgg gtccaaatgg ctatcgtcaa cgtcaaccac 4801 ttcctcaagg aggtcgaatc tacagacctc aaaattgatg ctatctcatc ctcagagctt 4861 tacaaggatg caaccttttt caaaccagac gtgcttaatt gcattaaaag atttgaatca 4921 aatgtcaagg tttcctctcg atctggtgac ggcctcgtcc tgtctgattt caaactgctc 4981 gatgacactg aaattgattc aatcaggaag aaaagcaaca agtacaaata cttgcactat 5041 ggagtcatcc tggttgggat caaagcaatg ttgccaaact ttaaaggcat ggaagggaga 5101 gtcattgttt atgatggagc ctgcctggat ccggaaagag gccacatttg ctcgtatctt 5161 ttcaagttcg agtctgactg ttgctacttt ggtctcaggc cagagcactg tttgtctact 5221 acagacacaa atttggcaaa aaggtttaga tttcgtgtgg actttgattg tccacaatat 5281 gaacaagaca ctgagttgtt tgctcttgac attggagttg catacagatg cgtcaactct 5341 gcaaggtttt tggaaaccaa aactggcgat tcagggtggg cttcacaggc aatcagcggc 5401 tgtgaagcac ttaaatttaa tgaggaaatc aggatggcca tcctggatcg caaatccccg 5461 ctgtttctgg aagaaggtgt accaaacgtg cacattgaaa agagactatt cagaggtgac 5521 aaggttagaa ggtcacgctc aatttccgct aaaagggggc caaactcaag ggtgcaagaa 5581 aagagaggat ttaggtccct ctcagctaga attgaaagat ttggaaaaaa tgagtttgga 5641 agacgtgctt cagcaagcga ggcgccaccg ggtaggagta tatctatgga agacccacat 5701 agacccggca aaggaactcc tgacagttcc tccccctgaa ggatttaagg aaggtgaaag 5761 ctttgagggc aaagagcttt accttcttct ttgcaaccat tactgtaaat acttgtttgg 5821 taatattgct gtctttgggt catctgataa gacccagttt cccgctgttg gatttgatac 5881 ccctccggtt cattttaatt tgacaacgac cccgaaagaa ggggagactg aagagcagaa 5941 gaaggccaga gagggatcgt ctggtgaaaa aacaaagatt tggaggatcg acttgtcaaa 6001 cgttgtacct gaactgaaaa cctttgctgc cacttctagg cagaactctt tgaacgaatg 6061 tacgttcagg aagctttgtg aaccatttgc tgatctagca cgtgaatttc tacatgaaag 6121 gtggtccaaa ggactggcca ccaatattta caagaaatgg cccaaagctt tcgaaaaaag 6181 tccatgggtg gcctttgatt ttgccactgg tctgaaaatg aatcgtctaa cacctgatga 6241 aaaacaggta attgatagaa tgaccaaaag actttttcgt actgaaggac aaaaaggggt 6301 tttcgaggca ggttcggaaa gtaacctgga actggagggt taggagtcgt gtgaaattcc 6361 gcaaacttgg tcgcggtctt gcaggttgac atgcctgcct ttatacttaa ataaagggtt 6421 cacccggttt tctgtataaa ggcaggcatg tcaa //