LOCUS JN701424 6496 bp RNA linear VRL 01-OCT-2012 DEFINITION Apple stem grooving virus isolate HH, complete genome. ACCESSION JN701424 VERSION JN701424.1 KEYWORDS . SOURCE Apple stem grooving virus ORGANISM Apple stem grooving virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Capillovirus. REFERENCE 1 (bases 1 to 6496) AUTHORS Hu,G., Hong,N. and Wang,G. TITLE Direct Submission JOURNAL Submitted (20-SEP-2011) Colleage of Plant Science & Technology, Huazhong Agricultural University, Shizishan, Hongshan Zone, Wuhan, Hubei 430070, China FEATURES Location/Qualifiers source 1..6496 /mol_type="genomic RNA" /country="China" /collection_date="03-Mar-2009" /host="Pyrus pyrifolia cv. 'Huanghua'" /db_xref="taxon:28347" /isolate="HH" /organism="Apple stem grooving virus" CDS 37..6354 /codon_start=1 /protein_id="AFP74102.1" /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFS FSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICIPSLLSSFKSVAFFSL RENKVNGFLKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGDVEFSSFRDRVIGLRDQCL TRNKFPKVLFLHDELHFLSPFDVAFLFETIPEIDRVVATTIFPIELLFGDRVSKEPRV YTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHV FSFDRGRACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANA ASAVAKLRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSILQWVKDKFCQVMPHF IAASFFEPTEFHLNMRKLLNDLATKGIEVPLSVTILDKVNFIETRFHARMFDIAQAIG VNLDSLGKRFDYEAESEEYFSENGYVFMPSKSNPERNWILNSGSLKVDFSKLMRARRF RLRRDFLDPISEGRSPRKQLFLELTRGIESDPNSEKSSENNGTKVEGSVENSQPHEAS RTPMDTEDGQGFEGSIPVDLINCFEPEEIKLPRRKRKNDCVFRAISAHLGIDSQDLLN FLVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLSMVYTSDFKEMAVLNRKYGVNGK MYCTIKGNHCELSSKECFIRLLREGGEAQMSNENLNADSMFDLGKFVHNRDRAVKLAK SIARGTTGLLNDFDPALCKAMVTLSELFPENFSSTVGLRLGFAGSGKTHKVLQWINYT PSVKRMFISPRRMLADEVAAQLKGTACEVHTWEVALKKIDGTFMEVFVDEIGLYPPGY LTLLQMCAFRKIVKGQSERFLRGKIAELSKTCLSIRCFGDPLQLRYYSAEDTNLLDKT HEIDLMVKTIKHKYLLQGYRFGQWFQELINMPTRVDDSKFSRKFFADISSVKTEDYGL ILVAKREDKGVFAGRVPVATVSESQGMTINKRVLICLDQNLFAGGANAAIVAITRSKV GFDFILKGNSLKEVQKMAQKTIWQFIIEGKTIPMERIVNMNPGASFYESPLDVGNSSI QDKASNDLFIMPFINLAEEEVDPEEIVGDVIQPVEWFKCHIPIFDTDPMLAEIFDKVA AKEKREFQSMLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQSSDDVTFWAGVQKRIR KSNWRREKSKFEEFESQGKELLNEFISMLPFEFKVNIKDIEDGEKSFLEKRKLKSEKM WANHSERSDIDWKLDHVFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR AIESAFLRSCGESYYIHSGKNFFCLDSFATKNAHVFDGFSIESDYTAFDSSQDHVILA FEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQL KYKVDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYL SPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYH YLVIRFFVKNSKLLTGLSKSLIFEIGEGIGSEWQSSMSTISSRKSSQQISKSTQFHPQ NFTKMQPSLNLTFSIASKDLSQMLRSPPDPVMALSCQTSNFLTTLKLIQLGKRATSTS TYTMESSWLELKQCCQISEVWKGESLFMMEPAWIQKEVTYARISSSLNLIAVTLVSDL SIACPPQMPTWRKDLGSAWTLIVRSMSRTQSCLLLTLVWLTDASIQLDSWKPKLETQG GLHKPLVAVKHSSSMRKLKWQFWTKSLHCSWKKVHQTCTLKKGCLGVTKLGGHARSLP KGGQTQNCREREDLGPSQLELKDLEKMSLEDVLQQARRHRVGAYLWKTHIDPARELLT VPPPEGFKEGESFEGRELYLLLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYN LTTTPKEGETEEQKKAREGSSGEKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRK LCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQ VIDRMTKRLFRTEGQKGVFEAGSESNLELEG" /product="241k polyprotein" /note="contains two consensus sequences associated with RNA-dependent RNA polymerase and NTP-binding helicase" CDS 4788..5750 /codon_start=1 /protein_id="AFP74103.1" /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIK RFESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNF RGMEGRVIVYDGACLDPERGHICSYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFR VDFDCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEI KMAILDQKSPLFLEEGAPNVHVEKRMFRGDKVRRSRSISAKRGPNSELQGKRGFRSLS ARIERFGKNEFGRRASTSEAPPGRSVSMENSHRPGKGTSDGSSP" /product="36K protein" /note="contains consensus sequence found in the active site of several cellular and viral serine proteases" ORIGIN 1 aaatttaaca gcgcttaatt tccgcgcttt acgtcaatgg ctttcactta cagaaacccc 61 ctcgagattg caatcaacaa acttcccagc aagcagtctg atcaactgct ttccttgacc 121 accgacgaga ttgaaaagac cttggaagtg actaaccgct tcttctcttt ttcaatcaca 181 ccagaagatc aagaattgtt gaccaagcat ggtttaacac ttgcacccat agggtttaaa 241 tcacattccc acccaatatc caaaatgata gaaaatcatc tcttgtatat atgtattccg 301 agtcttttgt cttcctttaa gtcagttgcc tttttttcac ttagggagaa taaagtgaat 361 ggctttctca agatgcactc agttttttct cacggaaaaa tcaaatcttt agggatgtac 421 aatgccataa ttgatgggaa agacaaatat aggtacggtg atgtggagtt ttcatccttt 481 agggatagag tgattggtct tagagatcaa tgccttacac gtaataaatt tccaaaagtt 541 ctgttcctcc atgacgagtt gcacttctta agcccatttg acgtggcttt tctgtttgaa 601 acgattccag aaattgatag agttgttgca accacaattt ttccaataga acttttgttt 661 ggagatagag tctccaagga acccagggtt tacacctaca aggtccatgg ttcttcattt 721 tcattttatc cggatggtgt tgcctctgaa tgttatgaac agaatttggc taattctaaa 781 tggcccttta cctgcagtgg catacaatgg gctaatagaa aaatcagggt aaccaagtta 841 cagagtctct tcgcccatca tgttttctca tttgacagag gaagggcttg caacgaattc 901 aatcatttcg acaaacctag ctgtctgctt gcggaagaga tgcgcctttt aaccaagaga 961 tttgacaagg cagttatcaa cagaagcaca gtctcctccc tcagcacata catggcctgc 1021 cttaaaactg caaatgcggc ttcagccgtc gccaagttga gacagttaga gaaaagagat 1081 ctttacccag atgaattgaa cttcgtctac tcctttggag agcatttcaa gaattttgga 1141 atgagagatg actttgatgt gtcaattctt caatgggtta aagacaaatt ttgccaggtc 1201 atgccccact tcatcgccgc tagttttttt gagcctacag aatttcattt gaacatgcgc 1261 aaactgctga atgacttggc caccaaagga atagaggtcc ctctttctgt gactatcctg 1321 gacaaagtta acttcataga aactagattt catgccagga tgttcgacat agcacaggct 1381 atcggagtga atctggattc actgggaaaa agatttgatt atgaagctga gagtgaagaa 1441 tacttttcag aaaacggtta cgtctttatg ccctccaaat caaatccaga gaggaattgg 1501 attctgaatt ctggttcgct gaaagttgac ttttcaaaat tgatgagagc taggaggttc 1561 agattgagaa gagattttct agatcccata tctgaaggaa gatctcccag aaaacaactc 1621 ttcttggagt taacaagagg cattgaatca gatcctaatt ctgaaaagag tagtgagaat 1681 aatggaacaa aagttgaagg cagtgttgaa aatagccagc cacatgaggc ttcacgtact 1741 ccaatggata ctgaggacgg acaaggtttt gaaggttcca taccagttga tctgatcaac 1801 tgctttgaac cagaagaaat caagctccca aggagaaaaa ggaaaaatga ttgcgtcttc 1861 agggctatct ctgcacactt gggaattgac tctcaagatt tattgaattt tttggtcaat 1921 gaagacatat cagatgaact gcttgactgc attgaagaag acaaaggact ttcacatgaa 1981 atgattgaag aagttttgat cacaaaaggt ctctcaatgg tttacacttc tgacttcaaa 2041 gaaatggcag ttctcaacag aaagtatgga gtaaatggca agatgtactg cacaatcaaa 2101 ggcaatcatt gcgagctaag ttcaaaagag tgtttcatca gattgttgag agaaggcggt 2161 gaagcgcaaa tgtcaaatga gaatttaaac gctgattcta tgttcgacct tggaaagttt 2221 gtgcacaata gggatagagc tgtcaaacta gcaaaatcca tagcgagagg tacaacaggc 2281 ctcttgaacg actttgaccc agcgctctgc aaggccatgg taactctttc agagttattt 2341 cctgaaaact tttcttccac cgttgggcta agacttgggt ttgcgggctc tggcaagact 2401 cataaagtgc tgcaatggat taattacact ccaagtgtca aaagaatgtt tataagtcca 2461 aggagaatgc tggcggatga agttgcagct caacttaaag gaacagcttg tgaagtgcat 2521 acatgggagg ttgctttaaa gaagattgac gggaccttta tggaagtttt tgtcgatgaa 2581 attggtttgt acccacctgg atacctcaca ttgttgcaaa tgtgcgcttt tagaaaaatt 2641 gtcaaagggc aaagtgagag gttcttaagg ggcaaaattg ctgaattgtc gaaaacctgc 2701 ctaagcataa ggtgctttgg tgacccacta caattgaggt actactctgc tgaggacacc 2761 aatcttctgg ataagacgca tgagattgac ttgatggtaa agacaatcaa gcacaagtac 2821 cttcttcaag ggtacagatt tggtcaatgg ttccaagaat tgataaatat gccaactaga 2881 gtggacgact caaagttctc tagaaagttc tttgcagata tttcgagtgt caaaactgaa 2941 gattatggac tcatcctcgt tgctaagagg gaagataaag gagtttttgc tgggagagtt 3001 ccggtagcca ctgtgagcga atctcagggg atgaccataa ataaaagagt gttaatatgc 3061 ctggatcaaa acctatttgc tggaggagcc aacgctgcca ttgttgccat aacaaggtcg 3121 aaggttggat ttgattttat tttgaaagga aactcactga aagaagtgca aaaaatggca 3181 caaaagacaa tttggcagtt catcattgaa ggcaaaacta tcccgatgga aagaatagtg 3241 aacatgaacc ctggggccag cttttatgag agtcccctag atgttggaaa ttcatccatt 3301 caggacaagg cctccaatga cttattcata atgccattca taaatttggc tgaagaagag 3361 gtcgacccgg aggagattgt cggggatgtg atccaacccg ttgaatggtt caaatgtcat 3421 atccctattt ttgacaccga cccaatgttg gcagagatat ttgacaaagt tgctgctaaa 3481 gagaaaaggg agtttcaatc catgctgggt ttgtcaaatc aattcctcga tatggaaaag 3541 aacgggtgta aaattgacat attgcctttt gcaaggcaga atgtctttcc acaccatcaa 3601 tcctcagatg atgtcacctt ctgggcaggt gtgcaaaaga gaataaggaa gtctaattgg 3661 aggcgtgaaa agtcaaaatt tgaagaattc gaaagtcagg ggaaagagct gctcaacgaa 3721 ttcatttcta tgttgccttt tgagttcaaa gttaacatta aggacattga agatggagag 3781 aaaagtttct tggaaaaaag aaagttaaaa tctgagaaaa tgtgggcaaa tcattcagag 3841 aggtctgaca tagattggaa acttgaccac gtctttctct tcatgaaatc acagtactgc 3901 acaaaagaag gaaagatgtt cactgaggca aaagccggtc aaactctagc ctgctttcag 3961 cacattgttt tgtttagatt cggccccatg ttaagggcaa ttgagagcgc ttttttgcgt 4021 agctgtgggg aatcgtacta tatacactct ggcaaaaact tcttctgctt agatagcttt 4081 gcaacgaaaa atgcacatgt ctttgatgga ttttcaattg agtctgatta cacagccttc 4141 gattcttctc aggaccatgt aattttggct tttgagatgg cgcttctaca gtacttgggt 4201 gtgtcaaagg agtttcagct tgattacctt agattaaaac tgactcttgg ttgtcgactc 4261 ggttcactgg caataatgag gtttactggg gagttctgca ctttcctgtt caatacgttc 4321 gccaatatgc tctttactca attgaagtac aaagtagacc caagaaggca cagaattcta 4381 tttgctgggg atgacatgtg ttccttgagc tccctaaaaa gaagaagagg ggaaagggca 4441 acaagattga tgaagagctt ctctctcact gcagtggaag aggtaagaaa gtttccaatg 4501 ttctgtggat ggtatttaag tccatatgga attatcaagt ctccaaagct actatgggcc 4561 agaattaaga tgatgagcga gaggcagctc ttgaaagaat gtgtcgacaa ttacctattt 4621 gaagcaatat ttgcctacag attaggtgag aggctgtaca caatcttgaa agaagaagat 4681 ttcgaatacc attaccttgt gataagattt tttgtcaaaa attcaaagct gctaacggga 4741 ttgagcaaga gtttgatctt tgaaattgga gaaggtattg gatctgaatg gcaatcgtca 4801 atgtcaacca tttcctcaag gaagtcgagt caacagatct caaaatcgac gcaatttcat 4861 cctcagaact ttacaaagat gcaaccttct ttaaacctga cgttctcaat tgcatcaaaa 4921 gatttgagtc aaatgttaag gtctcctcca gatccggtga tggccttgtc ttgtcagact 4981 tcaaacttct tgacgacact gaaattgatt caattaggaa aaagagcaac aagtacaagt 5041 acttacacta tggagtcatc ctggttggaa ttaaagcaat gttgccaaat ttcagaggta 5101 tggaagggag agtcattgtt tatgatggag cctgcctgga tccagaaaga ggtcacatat 5161 gctcgtatct cttcaagttt gaatctgatt gctgttactt tggtctcaga cctgagcatt 5221 gcctgtccac cacagatgcc aacttggcga aaagatttag gttccgcgtg gactttgatt 5281 gtccgcagta tgagcaggac acagagctgt ttgctcttga cattggtgtg gcttacagat 5341 gcgtcaattc agctcgattc ttggaaacca aaactggaga ctcagggtgg gcttcacaag 5401 ccattagtgg ctgtgaagca ctcaagttca atgaggaaat taaaatggca attctggacc 5461 aaaagtctcc attgttcttg gaagaaggtg caccaaacgt gcacgttgaa aaaaggatgt 5521 ttaggggtga caaagttagg aggtcacgct cgatctctgc caaaaggggg ccaaactcag 5581 aactgcaggg aaagagagga tttaggtccc tctcagctag aattgaaaga tttggaaaaa 5641 atgagtttgg aagacgtgct tcaacaagcg aggcgccacc gggtaggagc gtatctatgg 5701 aaaactcaca tagacccggc aagggaactt ctgacggttc ctccccctga aggattcaag 5761 gaaggtgaaa gctttgaagg cagagagctt taccttcttc tttgtaacca ttattgtaaa 5821 tacctatttg gtaacatagc tgttttcggg tcgtctgata agacccagtt tcccgctgtt 5881 ggatttgata cccctccggt tcattacaat ttgacaacga ccccgaagga aggggagact 5941 gaagagcaaa agaaggccag agagggttcg tctggtgaaa aaacgaaaat ttggagaatc 6001 gacttgtcaa atgtcgtgcc tgaattgaaa acctttgctg ccacttcgag gcagaactct 6061 ttgaacgaat gtacgttcag gaagctttgt gagccatttg ctgacttggc tcgtgaattt 6121 cttcatgaaa ggtggtcaaa aggattggcc accaacatat acaagaaatg gcccaaagct 6181 ttcgaaaaaa gcccgtgggt ggcatttgac tttgccaccg gtctcaaaat gaatcgtcta 6241 acacctgatg aaaagcaggt gattgatagg atgaccaaga ggctttttcg cactgaagga 6301 caaaaagggg ttttcgaggc aggttcggag agtaatctgg aactggaggg ttaggagtcg 6361 tgtgaaattc cgcaaacttg gtcgcggtct tgcaggttga catgcctgcc tttatactta 6421 aataaagggt tcacccggtt ttctgtgcat ttccgggtta gtgtggtttt tctagagtct 6481 agagtttgtc ctctct //