LOCUS AB004063 6495 bp RNA linear VRL 06-JUL-2000 DEFINITION Apple stem grooving virus genes for 241K polyprotein, 36K protein, complete cds. ACCESSION AB004063 VERSION AB004063.1 KEYWORDS . SOURCE Apple stem grooving virus ORGANISM Apple stem grooving virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Capillovirus. REFERENCE 1 AUTHORS Terauchi,H., Magome,H., Yoshikawa,N. and Takahashi,T. TITLE Nucleotide sequence of the genome of apple stem grooving capillovirus i solate and construction of an infectious cDNA clone of the genome containing a c auliflower mosaic virus 35S RNA JOURNAL Ann.Phytopathol.Soc.Japan 63, 432-436 (1997) REFERENCE 2 (bases 1 to 6495) AUTHORS Yoshikawa,N. TITLE Direct Submission JOURNAL Submitted (20-MAY-1997) Nobuyuki Yoshikawa, Iwate University, Faculty of Agriculture; Ueda 3-18-8, Morioka, 020 Japan, Morioka, Iwate 020, Japan (E-mail:yoshikawa@msv.cc.iwate-u.ac.jp, Tel:019-621-6150, Fax:019-621-6177) FEATURES Location/Qualifiers source 1..6495 /mol_type="genomic RNA" /db_xref="taxon:28347" /isolate="Li-23" /organism="Apple stem grooving virus" gene 36..6353 /gene="ORF1" CDS 36..6353 /codon_start=1 /protein_id="BAA98054.1" /gene="ORF1" /translation="MVFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFS FSITPEDQELLTKHGLTLAPIGFRSHSHPISKMIENHLLYICIPGLLSSFRSVAFFSL RKNKVDNFLQMHSVFSHGKIKSLGMYNAIIDGKDKYRYGEVSFTSFRDRVIGLRNQCL TRNKFPKVLFLHDEFHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRV YTYKVHGSSFSFYPYGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHV FSFDRGRACNEFNHFNKPSCLLADEMRLLTKRFDSAVINRSTVSSLSTYMACLKTANA ASAVAKLRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHF IAASFFEPTEFHLNMRKLLNDLATKGIEVPLSVIILDNVNFIETRFHARMFDIAQAIG VNLNSLGRRFDHDTESEEYFSENGYVFMPSKLNPDMKWILNSGSLEIDYSRLIKARRF RLRRDFLDLISRGDAPRRQLFLESTSDPKSNPEVHESDATGEAGSSVNDESCQSPKEF CAPMSTEDGQGFEGSIPIDLMNCFEPEEVKCPRRKRKNDCVFRAISAHLGIETQDLLN FLVNEDISEELLDCIDEDKGLSHEMIDEVLITKGLSMVYTSDFREMAVLNRKYGVNGK MYCTIKANHCELSSKECFVRLLKEGGEAQMSNENLNADSMFDLGKFVHNRERAVKLAK SMARGTTGLLSSFDPAFCKSMVTLSELFPENFSSTVGLRLGFAGSGKTHKVLQWINYT PSVKRMFISPRRMLADEVEVQLKGTACQVHTWETALKKIDGTFMGVFIDEIGLYPPGY LTLLQMCALRKIVKGQSERILKGKLSELSKTCLNMRCFGDPLQLRYYSAEDTNLLDKT HELDILTKTIKHKYLLQGYRFGQWFQELINMPTRVDDSKFSRKFFADISSVKTEDYGL ILVAKREDKGVFAGRIPVATVSESQGMTINKRVLICLDQNLFAGGANAAIVAITRSKV GFDFILKGNSLKEVQKMAQKTIWQFVIEAKSIPMERIVNMNPGASFYETPLDGGNSSI QDKASDDLFIMPLINLAEEEVDPEEVVGDVIQPVEWFKCHIPVFDTDPMLAEIFDKVA AKEKREFQSILGLSNQFLDMEKNGCKIDILPFARQNVFPHHQSSDDVTFWAGVQKRIR KSNWRREKTKFEEFESQGKELLQEFISMLPFEFKVNIKDIEDGEKSFLEKRKLKSEKM WANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR AIESAFLRSCGDSYYIHSGKNFFCLDSFVTRNAHVFDGFSIESDYTAFDSSQDHVILA FEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQL KYKIDPRKHRILFAGDDMCSLSSLKRRRGERATRLMGSFSLTAVEEVRKFPMFCGWYL SPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYH YLVIRFFVRNSKLLTGLSKSLIFEIGEGIGSEWRSSMSTISSRRSSQQTSRLTQSHPQ NFTKMQPFSSQMCSIVSKDLSQMSKFPPGLGMDWSCQISSCLMTLKSTQSGKRATSTS TCITESFWLESKQCCQTSEVWKEGSLCMTEPVLIRKEAIYARICLSLSLTAVTSVLDL NTAYPPQMPTWRRDSDFVWTLTAHSMNRTLSCLLLTLVWPTDVLIQLVSWRPRLETQG GPRRLLVAVRHSDLMKKLKWQFWIISLHYFWRKVFQMFILKRGCSEVTRLEGHAQFLQ KGGQTRNRRKREDLGPSQLELKDSEKMSLEDVLQQARRHRVGVYLWKTHIDPAKELLT VPPPEGFKEGESFEGKELYLLLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYN LTTTPKEGETEEQKKAREGSSGEKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRK LCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQ VIDRMTKRLFRTEGQKGVFEAGSESNLELEG" /product="241K polyprotein" /note="contains two consensus sequences associated with RNA-dependent RNA polymerase and NTP-binding helicase" gene 4787..5749 /gene="ORF2" CDS 4787..5749 /codon_start=1 /protein_id="BAA98055.1" /gene="ORF2" /translation="MAIVNVNHFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIK RFESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNF RGMEGRVIVYDGACLNPERGHICSYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFR VDFDCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWTSQAISGCEALRFNEEI KMAILDHKSPLFLEEGVPNVHIEKRLFRGDKIRRSRSISAKRGPNSKPQEKRGFRSLS ARIERFGENEFGRRASTSEAPPGRSVSLEDTYRPGKGTSDGSSP" /product="36K protein" /note="movement protein" ORIGIN 1 aaatttaaca ggcttaattt ccgcgctcta cgtcaatggt tttcacttac agaaatccgc 61 tagaaattgc aatcaacaaa cttccaagca agcaatctga tcaattgctt tccttgacca 121 cagacgagat tgaaaagacc ttagaagtga caaatcgctt cttctctttt tcaatcaccc 181 cagaagatca agaattgttg accaaacatg gtctaacact tgcgcctatc ggattcagat 241 cacattccca tccaatatcc aaaatgatag aaaatcatct cttgtacata tgtattcctg 301 gtcttctatc ttctttcagg tcagttgcct tcttctccct tagaaagaac aaagttgata 361 atttccttca aatgcattct gtattttcac acggaaaaat caaatctttg ggaatgtaca 421 atgcaataat tgacgggaag gacaagtata ggtatggtga ggtctctttc acctctttca 481 gagatagagt gataggtctt agaaatcaat gcctcacgcg taataaattt ccaaaggtgt 541 tattccttca tgacgaattc cactttctta gcccctttga tatggctttt ttatttgaaa 601 caattccaga aatagacaga gttgttgcaa ccacagtatt tccgattgaa ctgttatttg 661 gggacaaggt ctctaaggag cctagagttt atacctataa ggttcatgga tcttcctttt 721 cattttaccc ttacggtgta gcctctgaat gttatgaaca aaatttggca aattcgaaat 781 ggccttttac ctgtagtggc attcaatggg ccaataggaa gataagggtg accaagttgc 841 agagcttgtt tgctcaccat gttttttcat ttgacagagg cagggcctgc aatgaattta 901 accatttcaa taagccaagc tgcctgctcg cagatgaaat gcgtcttttg acaaaaaggt 961 tcgattctgc agtcatcaat cggagtacag tttcctctct cagcacttac atggcttgcc 1021 tcaaaactgc aaacgcagct tcagcagttg ctaaattgag acagttggag aagagagacc 1081 tctatccaga tgagctgaac tttgtttact ctttcgggga acatttcaag aattttggga 1141 tgagagatga ctttgacgtg tcagttctcc aatgggttaa agacaaattt tgtcaagtta 1201 tgcctcactt cattgctgct agtttctttg agccaacaga gtttcacctc aatatgcgaa 1261 aattattaaa tgacctggcc actaagggga tagaggttcc actatccgtc attatcctag 1321 acaatgtcaa ttttattgaa accaggttcc atgccaggat gtttgacata gcgcaggcta 1381 ttggggttaa cttgaactca cttgggcgca gatttgacca cgatactgaa agtgaggaat 1441 atttttcaga aaatggctat gtcttcatgc cttccaaatt gaatccagac atgaagtgga 1501 ttctgaactc tggctcttta gagattgact actctagatt gatcaaggcc aggagattca 1561 gattaaggag agattttctg gatctcatat ctagaggtga tgctcccagg aggcaactct 1621 tcttagaatc aaccagtgac cccaagtcaa atcccgaggt ccacgagagt gatgcaactg 1681 gagaggcagg gtcatcagta aatgacgaga gctgccagtc gccaaaggag ttttgtgcgc 1741 caatgtccac agaggacggc caaggtttcg aaggctcaat cccgattgat ttaatgaatt 1801 gctttgaacc ggaagaagtt aaatgcccaa gaaggaagag gaagaatgat tgcgttttta 1861 gggccatttc tgcacacttg ggaattgaaa cccaagactt gttgaatttc ctcgttaatg 1921 aggacatatc tgaagaacta ttggactgca ttgatgaaga caaagggctc tcacatgaaa 1981 tgattgacga agtattaatc acgaaaggtc tatctatggt ttatacttca gacttcagag 2041 agatggcagt ccttaacaga aaatatggtg tgaatggtaa aatgtactgc accatcaaag 2101 ccaaccactg tgaattgagc tcaaaagaat gttttgtcag actgttaaag gaaggtggag 2161 aagctcaaat gtcaaatgaa aacttgaatg ccgactccat gtttgacctt gggaaatttg 2221 tgcataacag ggagagagcc gttaaattag caaaatcaat ggcgagaggt accacaggtc 2281 ttttgagttc ctttgatccc gccttctgca agagcatggt cactctttca gagttgtttc 2341 ctgagaactt ttcatctact gttgggctaa gattgggatt tgctggttca ggaaagaccc 2401 acaaagtgct ccaatggatc aactacacac caagtgtcaa aagaatgttc ataagtccaa 2461 gaaggatgct agctgatgaa gttgaggtcc agcttaaagg gacagcctgt caagtgcaca 2521 cttgggagac cgctttgaag aagattgatg gaaccttcat gggggttttt attgatgaaa 2581 taggtttgta cccacctgga tacctcacat tgttacaaat gtgtgcttta agaaagattg 2641 tcaaaggaca gagtgagagg atcttgaaag gtaaactcag tgaactgtca aaaacttgtc 2701 tgaacatgag gtgttttggt gacccattac aattgagata ctactctgct gaggacacaa 2761 atcttctaga caaaacacat gagctcgaca ttttgactaa gacaatcaag cacaaatacc 2821 ttcttcaggg gtacagattt ggccaatggt ttcaagaact cataaacatg ccaaccaggg 2881 tggatgactc aaagttctca agaaagttct ttgcggacat ctccagtgtc aagactgaag 2941 attacgggct cattcttgtt gccaaaaggg aggacaaagg tgtttttgct gggaggatcc 3001 cagtggccac agttagcgag tctcaaggga tgacaataaa caaaagagta ttgatatgtc 3061 tggatcaaaa cctctttgct ggaggggcca atgctgcgat tgttgcaatc acaaggtcga 3121 aagttgggtt tgactttatc ctcaagggga actcactgaa ggaagtgcag aagatggccc 3181 aaaaaaccat ttggcaattc gttattgagg ccaaatctat cccaatggag agaatagtca 3241 acatgaatcc tggagccagc ttctatgaaa ccccgttgga cggtggaaat tcgtctattc 3301 aagacaaagc ttctgatgat ttgtttataa tgcctttaat aaatttggct gaggaagagg 3361 ttgacccaga ggaagttgtt ggggacgtga tacagcctgt tgaatggttt aaatgccaca 3421 tacctgtctt tgatacagat ccaatgctag cagagatatt cgataaagtg gccgcaaaag 3481 aaaagagaga gtttcaatct atattaggtc tctcaaatca atttttggac atggaaaaga 3541 acgggtgcaa aattgacata cttccttttg ctaggcaaaa tgtttttcct catcatcagt 3601 cctcagatga tgtcactttt tgggcaggtg ttcaaaagag gataaggaag tccaattgga 3661 ggcgtgaaaa aacaaaattt gaagaatttg agagtcaggg gaaagaactg ctccaagagt 3721 ttatttcgat gttgcccttt gaattcaagg ttaacattaa agacattgaa gatggagaaa 3781 aaagcttcct agaaaaaagg aaattgaagt cagaaaaaat gtgggcgaat cattcagaaa 3841 ggtctgacat cgactggaag cttgaccatg ccttcctctt tatgaaatca cagtattgca 3901 cgaaggaagg gaagatgttc accgaggcga aagccggcca aactttggcc tgcttccagc 3961 atattgtctt gttcagattc ggacccatgc tcagagcaat tgagagcgcc tttttaagga 4021 gctgtgggga ttcatactac atacactccg gaaaaaactt tttctgccta gacagctttg 4081 taacgagaaa tgcacatgtt tttgatggat tttcaataga gtccgactac actgctttcg 4141 attcatccca ggaccacgtc attttggcct tcgagatggc actattgcaa tatttgggtg 4201 tatccaaaga atttcagctt gactatctga ggttgaagtt gactcttggt tgtcgacttg 4261 ggtcattagc aataatgaga ttcaccgggg aattttgcac ctttctgttc aacacatttg 4321 ccaacatgct tttcactcag ttgaagtaca agatagaccc acggaaacat aggatcttat 4381 tcgcagggga tgacatgtgc tccctgagct ctctcaagag gagaagagga gaaagagcaa 4441 caaggttgat ggggagcttt tccctaactg cggtggagga agtgaggaaa ttccctatgt 4501 tctgtggatg gtatttgagt ccatatggaa ttatcaaatc tccaaaattg ttatgggcca 4561 ggattaagat gatgagtgaa agacagctcc tgaaagaatg cgttgacaac tatctgtttg 4621 aggcaatatt tgcctacagg ttaggtgaga ggctgtacac aattttgaaa gaagaagact 4681 tcgaatatca ttatcttgtt ataagattct ttgtcaggaa ttcaaagctg ctaacgggtt 4741 taagcaagag cttgattttc gaaattggag aaggaattgg gtctgaatgg cgatcgtcaa 4801 tgtcaaccat ttcctcaagg aggtcgagtc aacagacctc aagattgacg caatctcatc 4861 ctcagaactt tacaaagatg caaccttttt caagccagat gtgctcaatt gtatcaaaag 4921 atttgagtca aatgtcaaag tttcctccag gtctggggat ggactggtct tgtcagattt 4981 caagttgctt gatgacactg aaatcgactc aatcaggaaa aagagcaaca agtacaagta 5041 cttgcattac ggagtcattc tggttggaat caaagcaatg ctgccaaact tcagaggtat 5101 ggaaggaagg gtcattgtgt atgacggagc ctgtcttaat ccggaaagag gccatatatg 5161 ctcgtatttg tttaagtttg agtctgactg ctgttacttc ggtcttagac ctgaacactg 5221 cttatccacc acagatgcca acctggcgaa gagattcaga tttcgtgtgg actttgactg 5281 cccacagtat gaacaggaca ctgagttgtt tgctcttgac attggtgtgg cctacagatg 5341 tgttaattca gctcgtttct tggagaccaa gactggagac tcagggtgga cctcgcaggc 5401 tattagtggc tgtgaggcac tcagatttaa tgaagaaatt aaaatggcaa ttttggatca 5461 taagtctcca ctatttctgg aggaaggtgt tccaaatgtt catattgaaa agaggctgtt 5521 cagaggtgac aagattagaa ggtcacgctc aatttctgca aaaagggggc caaactcgaa 5581 accgcaggaa aagagaggat ttaggtccct ctcagctaga attgaaagat tcggagaaaa 5641 tgagtttgga agacgtgctt caacaagcga ggcgccaccg ggtaggagtg tatctttgga 5701 agacacatat agacccggca aaggaacttc tgacggttcc tccccctgaa gggtttaagg 5761 aaggtgaaag ctttgaaggc aaggagcttt accttcttct ttgcaaccat tattgtaaat 5821 acttatttgg taatattgct gtttttgggt catctgataa gacccagttt cctgctgttg 5881 gatttgatac ccctccggtt cattacaatt tgacaacgac cccaaaagaa ggggaaactg 5941 aagagcaaaa gaaggccaga gagggttcgt ctggcgaaaa aacaaaaatt tggagaatcg 6001 acttgtcaaa tgttgtacct gaattgaaaa cctttgctgc cacttctagg cagaactctt 6061 tgaatgaatg tacattcaga aagctttgtg agccattcgc tgatttggcc cgtgagtttc 6121 ttcatgaaag gtggtcaaaa ggattggcca ctaacattta taagaaatgg cccaaagctt 6181 ttgaaaaaag cccttgggtg gcatttgatt ttgccaccgg tctaaaaatg aatcgtttaa 6241 cacctgatga gaaacaggtg atcgacagga tgaccaaaag gctttttcgt actgaaggac 6301 aaaaaggggt tttcgaggca ggttcggaga gtaatctgga actggagggt taggagtcgt 6361 gtgaaattcc gcaaatttgg tcgcggtctt gcaggttgac atgcctgcct ttatacttaa 6421 ataaagggtt cacccggttt tctgtgcatt tccgggttag tgtggttttt ctagagtcta 6481 gagtttgtcc actct //