LOCUS KX686111 6495 bp RNA linear VRL 02-OCT-2016 DEFINITION Apple stem grooving virus isolate M220, complete genome. ACCESSION KX686111 VERSION KX686111.1 KEYWORDS . SOURCE Apple stem grooving virus ORGANISM Apple stem grooving virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Betaflexiviridae; Trivirinae; Capillovirus. REFERENCE 1 (bases 1 to 6495) AUTHORS Souza,E.B., Nickel,O., Fajardo,T.V.M., Aragao,F.J.L. and Barros,D.R. TITLE Molecular characterization of complete genome of two Brazilian isolates of Apple stem grooving virus JOURNAL Unpublished REFERENCE 2 (bases 1 to 6495) AUTHORS Souza,E.B., Nickel,O., Fajardo,T.V.M., Aragao,F.J.L. and Barros,D.R. TITLE Direct Submission JOURNAL Submitted (08-AUG-2016) Laboratorio de Virologia, Embrapa Uva e Vinho, Embrapa, Rua Livramento, 515, Bento Goncalves, RS 95701-008, Brazil FEATURES Location/Qualifiers source 1..6495 /mol_type="genomic RNA" /country="Brazil" /collected_by="Osmar Nickel" /collection_date="22-Jan-2014" /host="Malus domestica (apple) cv. Fuji" /db_xref="taxon:28347" /isolate="M220" /organism="Apple stem grooving virus" CDS 36..6353 /codon_start=1 /protein_id="AOS50883.1" /translation="MAFTYRNPLEIAINKLPSKQSDQLLALTTDEIEKTLEVTNRFFS FSITPEDQELLTKHGLTLAPIGFKSHSHPISKMIENHLLYICIPSLLSSFKSVAFFSL RENKMNSFLKMHSVFSHGKIKSLGMYNAIIDGKDKFRYGDVQFSSFRDRVIGLRDQCL TRNKFPKVLFLHDELHFLSPFDMAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRV YTYKVHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHV FSFDRGRACNEFNHFDKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANA ASAVAKLRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSILQWVKDKFCQVMPHF IAASFFEPTEFHLNMRKLLNDLATKGIEVPLSVIILDKVNFIETRFHARMFDIAQAIG VNLDLLGKRFDYEAESEEYFSENGYIFMPSKSNPERNWILNSGSLKIDYSRLVRARRF RLRRDFLDPISKGKSPRKQLFLESMGNIKSNPNAEKGSESGEIKVEGSAENDQPHEVS HTSMETEDGQGFEGSIPVDLINCFEPEEIKLPKRRRKNDCVFKAISAHLGIDSQDLLN FLVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLSMVYTSDFKEMAVLNRKYGVNGK MYCTIKGNHCELSSKECFIRLLKEGGEAQMSNENLNADSLFDLGRFVHNRDRAVKLAK SMARGTTGLLNEFDLEFCKNMVTLSELFPENFSSVVGLRLGFAGSGKTHKVLQWINYT PSVKRMFISPRRMLADEVEPQLKGTACQVHTWETALKKIDGTFMEVFVDEIGLYPPGY LTLLQMCAFRKIVKGQSENFLKGKLLELSKTCLNIRCFGDPLHLRYYSAEDTDLLDKT HDIDLMIKTIKHKYLFQGYRFGQWFQELVNMPTRVDESKFSRKFFADISSVKTEDYGL ILVAKREDKGVFAGRVPVATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKV GFDFILKGNSLKEVQRMAQKTIWQFIIEGKSIPMERIVNMNPGASFYESPLDVGNSSI QDKASHDLFIMPFINLAEEEVDPEEVVGDVIQPVKWFKCHVPVFDTDPMLAEIFDKVA AKEKREFQSVLGLSNQFLDMEKNGCKIDILPFARQNVFPHHQASDDVTFWAGVQKRIR KSNWRREKSKFEEFESQGKELLQEFISMLPFEFKVNIKDIEDGEKSFLEKGKLKSEKM WANHSERSDIDWKLDHAFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLR AIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNANVFDGFSIESDYTAFDSSQDHVILA FEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQL KYKIDPRRHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYL SPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYH YLVIRFFVRNSKLLTGLSKSLIFEIGEGIGSKWLSSTSTASSRRSNLQTSKLMLSRPQ SFTRMQPFSNQTCLIASKDLNQMSRFPLDLVTASSCLISNCSMTPKLIQSGRRATSTN ICIMESSWLGSKQCCQTLEAWKGESLYMMEPAWIRKEATFARIFSSLSLTVATLVSGQ STVCLLQTQTWQKGLDFVWTLIVHNMNKTLSCLPLTLELHTDASTLQGFWKPKQAIQG GLHRQSAAVKHLNSMRKSRWPSWIANPRCFWKKVHQTCILKRDCSEVTRLEGHAQFPL KGGQTQGCKKREDLGPSRLELKDLEKMSLEDVLQQARRHRVGVYLWKTHIDPAKELLT VPPPEGFKEGESFESKELYLLLCNHYCKYLFGNIAVFGSSDKTQFPAVGFDTPPVHYN LTTTPKEGETDEERKARAGSSGEKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRK LCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQ VIDRMTKRLFRTEGQKGVFEAGSECHLELEG" /product="241k polyprotein" CDS 4787..5749 /codon_start=1 /protein_id="AOS50884.1" /translation="MAIVNVNRFLKEVESTDLKIDAISSSELYKDATFFKPDVLNCIK RFESNVKVSSRSGDGLVLSDFKLLDDTEIDSIRKKSNKYKYLHYGVILVGIKAMLPNF RGMEGRVIVYDGACLDPERGHICTYLFKFESDCCYFGLRPEHCLSTTDANLAKRFRFR VDFDCPQYEQDTELFALDIGVAYRCVNSARFLETKTGDSGWASQAISGCEALKFNEEI KMAILDRKSPLFLEEGAPNVHIEKRLFRGDKVRRSRSISAKRGPNSRVQEKRGFRSLS ARIERFGKNEFGRRASTSETPPGRSISMEDSHRPGKGTSDGSSP" /product="36K protein" ORIGIN 1 aaatttaaca ggcttaattt ccgcgcttta cgtcaatggc tttcacttac agaaaccctc 61 tagaaattgc aatcaacaaa cttcccagca agcaatctga tcaattgctt gcattaacca 121 cagacgagat tgaaaagacc ctagaagtga ccaatcgctt cttttctttt tcaataaccc 181 cagaagatca agaactgtta accaagcatg ggttaacact tgcacccatc ggattcaaat 241 cgcactctca tcctatttct aagatgatag aaaatcatct tctgtacata tgcattccaa 301 gccttttgtc ctccttcaaa tcagttgctt ttttttcact tagagaaaat aaaatgaaca 361 gttttctcaa aatgcattcg gttttttccc atggaaaaat aaagtctcta ggtatgtaca 421 atgccatcat tgatgggaaa gacaaattta gatatgggga cgtccagttc tcttctttta 481 gagatagagt gattggtctt agagatcaat gcctcacacg taataaattt ccaaaagttc 541 tgtttcttca cgacgagttg catttcctaa gtccatttga catggctttc ctatttgaga 601 caatcccaga aattgataga gttgttgcaa ccacagtttt tccgatagaa cttttatttg 661 gggacaaggt ctctaaggaa cccagggttt atacctacaa ggtccatggc tcttcatttt 721 cattttatcc ggatggcgtt gcctctgagt gttacgaaca gaatttggca aattctaaat 781 ggcccttcac ctgcagtggc atacaatggg ctaacaggaa aattagggta accaagctac 841 agagtctctt cgcccatcat gttttctcat ttgacagagg gagggcttgc aatgaattca 901 atcatttcga caaacctagc tgtctacttg cggaagaaat gcgccttttg accaaaaggt 961 ttgataaagc agttattaac agaagcacag tctcttccct cagtacatac atggcttgtc 1021 ttaaaactgc aaatgcggct tcagctgttg ccaagctgag gcagttggag aagagggacc 1081 tttacccaga tgagttgaac ttcgtctatt cctttggaga gcatttcaaa aattttggga 1141 tgagagatga ctttgatgtg tcaattttac aatgggtcaa agacaaattt tgccaggtca 1201 tgccccactt catcgctgcc agtttttttg aaccaacaga atttcattta aacatgcgca 1261 aattgttgaa tgatctggct actaaaggga tagaggttcc cctttctgtg atcatcctgg 1321 acaaagtcaa cttcatagag accagattcc atgccaggat gttcgacata gcgcaggcaa 1381 tcggggtgaa cctagatttg ctggggaaaa gatttgatta tgaagctgag agtgaagaat 1441 acttttcaga gaacggttac atctttatgc cctctaaatc aaatccagag agaaattgga 1501 ttctaaattc tggttcgctg aaaattgact attcaagatt ggtgagagcc aggagattta 1561 gattaagaag agatttccta gatcccatat ctaaaggaaa atcccctaga aaacaactct 1621 tcttggagtc aatgggaaac attaaatcaa atcccaatgc tgaaaaaggt agcgagagtg 1681 gcgaaataaa ggttgaaggc agtgccgaaa atgaccagcc acatgaagta tcacatactt 1741 caatggaaac cgaggatgga cagggttttg aaggttcaat accagttgat ttgatcaatt 1801 gctttgaacc agaagaaatc aagctcccaa agagaagaag gaaaaatgat tgcgtcttca 1861 aggccatctc tgcacacttg gggattgact ctcaagattt gttgaatttt ttggtaaatg 1921 aagacatatc agatgaattg cttgattgca ttgaagagga caaaggactg tcacatgaaa 1981 tgattgaaga agttttgatc acaaagggtc tttcaatggt ttatacttct gacttcaaag 2041 aaatggcagt tcttaatagg aagtatggag tgaatggcaa gatgtactgc acaattaaag 2101 gcaatcactg cgagctgagt tccaaagagt gcttcatcag attattgaaa gaaggtggtg 2161 aagcgcagat gtcaaatgaa aatctaaatg ctgattcctt gttcgacctt ggaagatttg 2221 tgcataatag agacagagct gtcaagctag caaaatccat ggcaagaggt acaacaggcc 2281 tcctgaacga attcgaccta gaattctgca aaaacatggt aaccctttca gaattgtttc 2341 ctgaaaactt ttcttctgtt gtcgggctaa ggcttgggtt tgcgggttct ggtaaaacgc 2401 ataaggtgct tcaatggatt aattacactc caagtgttaa aagaatgttt ataagtccaa 2461 gaagaatgct agcggatgaa gttgaacctc aactcaaagg aacggcctgt caggtgcata 2521 catgggagac cgcacttaaa aaaatcgacg gaacttttat ggaagttttt gttgatgaga 2581 taggtttgta cccacctgga taccttacac tgctacagat gtgtgctttc agaaagattg 2641 ttaagggaca aagtgaaaat ttcttgaaag gcaaactgtt ggaattgtca aagacttgcc 2701 taaacataag atgttttggt gatccattgc atttaaggta ttactcagct gaagacaccg 2761 atctattgga caaaacacat gatattgacc tcatgatcaa gacgatcaag cacaaatatc 2821 tttttcaagg gtacaggttt ggtcagtggt ttcaagaact ggtgaatatg ccaaccagag 2881 tagatgagtc gaaattctca aggaagttct ttgcagacat ttcaagtgta aaaactgaag 2941 attacggact catcctagtt gccaagagag aagataaagg tgttttcgct ggaagagttc 3001 ctgtagcaac agtgagtgaa tctcagggaa tgaccattag caaaagggtg ttgatatgtt 3061 tggaccaaaa tctttttgcc gggggagcca atgcagccat tgttgcaata acaagatcaa 3121 aggtcggctt tgactttatc cttaaaggga attcattgaa agaggtacag aggatggcac 3181 aaaagacaat ttggcagttc atcattgaag ggaagtctat tccgatggag aggatagtga 3241 acatgaatcc tggagccagc ttttatgaga gtcctttgga tgttggaaat tcatcgattc 3301 aagacaaagc ttctcatgac ctgttcataa tgccttttat aaatttggct gaggaagaag 3361 ttgatccgga ggaagttgtt ggggacgtaa ttcaacctgt taagtggttc aaatgtcatg 3421 tgcctgtctt cgacacagat ccaatgcttg cagagatttt tgataaggtt gcagcaaaag 3481 aaaaaaggga attccagtct gtattgggtc tttcaaatca attccttgac atggaaaaga 3541 atggatgcaa gatagacatc ttgccctttg cgcgacaaaa tgtttttcca catcatcaag 3601 cgtctgatga tgttactttc tgggcaggtg ttcaaaaaag aatcagaaag tcgaactgga 3661 gaagggagaa atcaaagttt gaggaatttg aaagccaagg gaaagaactt cttcaagaat 3721 ttatctcaat gctaccgttt gaattcaagg tgaatatcaa ggatattgaa gatggagaga 3781 agagcttttt agagaaagga aagctaaaat ctgagaaaat gtgggcaaat cattcggaga 3841 gatcagacat tgactggaaa cttgaccacg cctttctctt catgaaatca caatattgca 3901 cgaaggaagg gaagatgttc accgaagcta aagctggcca aactttggcc tgctttcaac 3961 acatagtcct atttagattt ggacccatgt tgagagcaat tgaaagtgcc tttttgagaa 4021 gctgtggaga ctcatactac atacactccg ggaaaaactt cttctgcctg gatagctttg 4081 tgacaaagaa tgcaaatgtc tttgatggat tttcaattga gtcagactac acggcctttg 4141 actcatctca ggaccacgtc atattggcct ttgaaatggc actattacaa tacctgggcg 4201 tgtcaaaaga gtttcagcta gattacctta gactgaaatt aactctcgga tgccgtctcg 4261 gatcactggc aataatgagg ttcacaggag aattttgcac tttcttattc aacacatttg 4321 ccaacatgct gtttactcaa ttgaagtaca agatagaccc aaggaggcat aggattttat 4381 ttgctgggga cgatatgtgt tccttgagct ctctcaaaag aaggagaggg gagagagcga 4441 caagattgat gaagagcttt tccctaactg cagtagaaga ggtgagaaaa tttccaatgt 4501 tttgtggatg gtacttaagt ccatacggta tcatcaaatc tccaaaattg ttgtgggcca 4561 ggatcaagat gatgagtgag agacagcttt tgaaggaatg tgttgataat tacctgtttg 4621 aggcaatatt tgcctacaga ttaggtgaga ggctttacac aattttgaaa gaagaggatt 4681 ttgaatacca ttatcttgtc ataagatttt ttgttagaaa ttcaaaattg ttaacagggt 4741 tgagcaaaag cttgatattt gaaattgggg agggcatcgg gtccaaatgg ctatcgtcaa 4801 cgtcaaccgc ttcctcaagg aggtcgaatc tacagacctc aaaattgatg ctatctcgtc 4861 ctcagagctt tacaaggatg caaccttttt caaaccagac gtgcttaatt gcatcaaaag 4921 atttgaatca aatgtcaagg tttcctctcg atctggtgac ggcctcgtcc tgtctgattt 4981 caaactgctc gatgacaccg aaattgattc aatcaggaag aagagcaaca agtacaaata 5041 tttgcattat ggagtcatcc tggttgggat caaagcaatg ttgccaaact ttagaggcat 5101 ggaagggaga gtcattgtat atgatggagc ctgcctggat ccggaaagag gccacatttg 5161 cacgtatctt ttcaagtttg agtctgactg ttgctacttt ggtctcaggc cagagcactg 5221 tttgtctact acagacgcaa acttggcaaa aaggtttaga tttcgtgtgg actttgattg 5281 tccacaatat gaacaagaca ctgagttgtt tgcccttgac attggagttg catacagatg 5341 cgtcaactct gcaaggtttt tggaaaccaa aacaggcgat tcagggtggg cttcacaggc 5401 aatcagcggc tgtgaagcac ttaaattcaa tgaggaaatc aagatggcca tcctggatcg 5461 caaatccccg ctgtttctgg aagaaggtgc accaaacgtg catattgaaa agagactgtt 5521 cagaggtgac aaggttagaa ggtcacgctc aatttccgct aaaagggggc caaactcaag 5581 ggtgcaagaa aagagaggat ttaggtccct ctcggctaga attgaaagat ttggaaaaaa 5641 tgagtttgga agacgtgctt caacaagcga gacgccaccg ggtaggagta tatctatgga 5701 agactcacat agacccggca aaggaacttc tgacggttcc tccccctgaa ggatttaagg 5761 aaggtgaaag ctttgagagc aaagagcttt accttcttct ttgcaaccat tactgtaaat 5821 acttgtttgg taatattgct gtctttgggt catctgataa gacccagttt cccgctgttg 5881 gatttgatac acctccggtt cattacaatt tgacaacgac cccaaaggaa ggggagactg 5941 acgaagaaag gaaggccaga gcgggttcgt ctggcgaaaa aacaaaaatt tggaggatcg 6001 acttgtcaaa tgttgttcct gaattgaaaa cctttgctgc cacttccagg cagaactctt 6061 tgaacgaatg tacgttcaga aagctttgcg agccatttgc cgatttggct cgagaatttc 6121 tgcatgaaag gtggtccaag ggattggcca ccaatattta caagaaatgg cccaaagctt 6181 tcgaaaaaag tccatgggtg gcctttgatt ttgccactgg tctgaaaatg aatcgtctaa 6241 cacctgatga gaaacaggtg attgatagaa tgaccaaaag actttttcgt actgaaggac 6301 aaaaaggggt tttcgaggca ggttcagaat gtcacctgga actggagggt taggagtcgt 6361 gtgaaattcc gcaaacttgg tcgcggtctt gcaggttgac atgcctgcct ttatacttaa 6421 ttaaagggtt cccccggttt tctgagcatt tccgggttag tgtggttttt ctagagtcta 6481 gagtttgtcc actct //