LOCUS       NC_030890               1763 bp    RNA     linear   VRL 21-MAY-2017
DEFINITION  Arabidopsis halleri partitivirus 1 genomic RNA, segment 2,
            complete sequence.
ACCESSION   NC_030890
VERSION     NC_030890.1
DBSOURCE    BioProject accession PRJNA342649
KEYWORDS    RefSeq.
SOURCE      Arabidopsis halleri partitivirus 1
  ORGANISM  Arabidopsis halleri partitivirus 1
            Viruses; dsRNA viruses; Partitiviridae; unclassified
            Partitiviridae.
REFERENCE   1
  AUTHORS   Kamitani,M., Nagano,A.J., Honjo,M.N. and Kudoh,H.
  TITLE     RNA-Seq reveals virus-virus and virus-plant interactions in nature
  JOURNAL   FEMS Microbiol. Ecol. 92 (11) (2016)
   PUBMED   27549115
  REMARK    DOI:10.1093/femsec/fiw176
REFERENCE   2  (bases 1 to 1763)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2016) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1763)
  AUTHORS   Kamitani,M., Kudoh,H. and Nagano,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAY-2016) Contact:Mari Kamitani Kyoto university,
            Center for Ecological Research; 2-chome, Hirano, Otsu, Shiga
            520-2113, Japan URL :http://www.ecology.kyoto-u.ac.jp/
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to LC151462.
            ##Assembly-Data-START## Assembly Method :: Trinity v. 2.0
            Sequencing Technology :: Illumina HiSeq 2000 ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1763
                     /mol_type="genomic RNA"
                     /db_xref="taxon:1849335"
                     /country="Japan"
                     /segment="2"
                     /organism="Arabidopsis halleri partitivirus 1"
                     /host="Arabidopsis halleri"
     5'UTR           1..102
                     /note="5'UTR (Segment 2)"
     gene            103..1566
                     /locus_tag="BHT43_s2gp1"
                     /db_xref="GeneID:28721367"
     CDS             103..1566
                     /locus_tag="BHT43_s2gp1"
                     /db_xref="GeneID:28721367"
                     /codon_start=1
                     /protein_id="YP_009273019.1"
                     /translation="MSMKRKSRPSSSTKDLEVEDTYLKQSGLDSMNKLEPVEQSKDEE
                     TTKVSMLPTASTAIIAPRKLTAEDFSSKRKPDQTSAVSPFFGFLRTHILHPTQGRLSH
                     YYPSCHMMDYILHSINSTLCDNYYFKRETPNYHPYILRLYFGVLFWVQCLRAGNDVQV
                     INDLHYDFLQRFLDCNPLESLAIPGPLLGLFKTLCSSQPEFPHYGKVYPRIPASPGPR
                     RRDMFSKNVPSAQFLPNVPGIFALIHHLHGLSEGEHPIYPKRKRHIPVTEEASNFGFK
                     AFAAFPNRIQRDRWMVSSPGLQYPCEADMKMNEAFAERFYDFDFPAFNADDNLSTITN
                     FLHMRKSMAWFIRAKEVACSAARFFSDSGTLADCSPHGLVSNQIIVAITPPPEETFAD
                     PRFSADPRALYPFSFKLKSTAHNLPPLAEAAAAFSQTHIRIFPEYPLAGNFGQKTDES
                     GPFWDIRPIGSSPTDDTSYLTIPPMVKAALIEKGSSR"
                     /product="capsid protein"
                     /note="CP (Segment 2)"
     3'UTR           1567..1763
                     /note="3'UTR (Segment 2)"
ORIGIN      
        1 gaaattacta ccaatttcaa attcccacgt tataattaac ccaacagata ttctgttccc
       61 ttatatagct ccccactcac cacaacaact tgtctactta caatgtcgat gaaaagaaag
      121 tcaaggccta gttcttcaac aaaagattta gaggtagaag acacctatct caaacaatct
      181 ggacttgatt caatgaataa gctcgaacca gtcgagcaat caaaagacga agagactacc
      241 aaagtctcca tgctccccac cgcttctact gctataatcg ccccgcgtaa actaactgcg
      301 gaagatttta gctctaaacg taagccggat caaacgtccg ctgttagccc attctttggg
      361 ttccttagga cccacatcct acaccctaca cagggcaggc tctcacacta ctacccttcc
      421 tgccacatga tggactacat tcttcactct atcaattcaa ctctctgtga taattactac
      481 ttcaagagag aaactccaaa ctaccaccct tacattctcc gactctactt cggagttctt
      541 ttctgggttc agtgcttgcg cgctggaaat gatgttcagg tcattaatga cctacactac
      601 gatttcttgc agcgtttcct agactgcaat cctctcgagt ctttggccat tccaggccca
      661 cttctcggac tcttcaagac actctgctcc tcccagccag agttcccaca ttatgggaaa
      721 gtttaccccc gcattcctgc gagcccagga ccaagacgcc gagacatgtt ctcaaagaac
      781 gtcccaagcg cccaattctt acccaacgtt cctggtattt tcgcactcat ccaccatctc
      841 cacggacttt ctgagggtga acacccgatt tacccgaaaa gaaaaagaca cattcctgtc
      901 actgaggagg ccagtaactt cggtttcaag gccttcgccg cttttccaaa cagaatccag
      961 cgcgatcgtt ggatggttag ctcccccggc ctccagtatc cctgtgaagc cgacatgaag
     1021 atgaatgaag cgttcgctga acgtttctat gattttgact ttcctgcctt taacgcagat
     1081 gacaatctct ccaccatcac caacttcctc cacatgagga aaagtatggc ttggttcatc
     1141 cgggccaagg aagtcgcctg ctcggccgct agattctttt cagactctgg cactctcgcc
     1201 gactgttctc cacacggtct ggtctcaaac cagatcattg ttgcgattac tcctccacct
     1261 gaggagactt ttgctgatcc ccgcttctcc gccgatccaa gagccctcta tcccttcagt
     1321 ttcaagctga agagcaccgc ccacaacctc cccccacttg cggaagctgc cgcagccttc
     1381 tcccagacgc acatccggat ttttccggaa tacccgttgg ccggaaactt tggtcaaaag
     1441 accgacgaat caggcccctt ttgggacatc aggcccattg gctccagccc caccgacgac
     1501 acctcctacc tcaccatccc acccatggtc aaggcagcac tcatcgagaa aggctccagc
     1561 cgttaggagt catgcactga cagacatcag ccgctgacca ccttttttct ttttcctagt
     1621 atctcggatt tagaaagcag caattttaca aaagcagtcc cattcggact agctgctttt
     1681 tcttacgcat ttgcgtttgc ttttcccttt tagtattcct tcttttatta ctaaatgtat
     1741 aacttaaatt aaaaagaaaa aaa
//