LOCUS EU617326 7334 bp RNA linear VRL 21-JUL-2008 DEFINITION Arabis mosaic virus isolate Lv segment RNA1, complete sequence. ACCESSION EU617326 VERSION EU617326.1 KEYWORDS . SOURCE Arabis mosaic virus ORGANISM Arabis mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus. REFERENCE 1 (bases 1 to 7334) AUTHORS Dupuis,L., Cobanov,P., Bassler,A., Krczal,G. and Wetzel,T. TITLE Complete genome sequence of a virulent isolate of Arabis mosaic virus from privet (Ligustrum vulgare) JOURNAL Arch. Virol. 153 (8), 1611-1613 (2008) PUBMED 18563287 REFERENCE 2 (bases 1 to 7334) AUTHORS Dupuis,L., Cobanov,P., Bassler,A., Krczal,G. and Wetzel,T. TITLE Direct Submission JOURNAL Submitted (03-APR-2008) Alplanta - Institute for Plant Research, Rlp Agroscience, Breitenweg 71, Neustadt An Der Weinstrasse 67435, Germany COMMENT GenBank Accession Numbers EU617326-EU617327 represent the complete genome of Arabis mosaic virus isolate Lv. FEATURES Location/Qualifiers source 1..7334 /mol_type="genomic RNA" /db_xref="taxon:12271" /isolate="Lv" /segment="RNA1" /organism="Arabis mosaic virus" /host="Ligustrum vulgare" CDS 230..7087 /codon_start=1 /protein_id="ACF32434.1" /translation="MWQISEGSQCCCTGKSWSNAEAKEARYVCDCLFNCRLVKVEVAP QPPKSRIAPAQQKKERIAPLQNSNGRIAPTTPKSKRASVPDVPLVKQRCDVVVRVGPP ANLELIYPALVREEVATPPTEKVLQPTIKADIGVPVSMAPKWMVAIPKPPVKTAPEVE KTQFPKGAVCYNGTNFLDAKGKVVLSEGAKRVLKGIRVAKQQRLRAARRSAACKKIRK ARALALYERLSEERAFQELPGGFAGEMPVGFFSYGKTVAIPTATPKKVVSKRKRASKP STVAVPVQDFSCIDAFDWGEKSFSVKEVIEDDWILIEKPVLKRQAVHSVQGRATEALT RFAASSGFTVKAHQKVEELALSGEAGHLIAGEFADLCLRSLVYNDAPVLSASIEELAC EQDFKDAIELFNIELAELPTDSTTCGRFNDWAASAKTMAKGVGSLVGDLARATGAGAL ITFDKCLEYLQEKALTLCQKVFNATMAPYLSHLAEASNIIKKIWKKLGEWMESLKGKA GLALEVLAHHAIFALGAIVVGGVIVLVEKVLVVCKVIPSCGIVLGAFLTLFFASLGLT ALECTADEIFKMHQCCKGAIYSMYSVKEPVCEGEGDSTTRGVLQGLDNAISALTRVGQ SMISFKLGSFSYYAKIAQGFDQLARGKRAIGELASWLIDLVGSVYSKVSGQESTFFDE LSTIVCLDVRSWLLKSKRVRLQVETMAIGDRITLDTISKLLEEGHKILVTAAGVPRKT SADFTMCIKEEVSKLEEVHQRTACAGINEGMRQFPFWVYIFGTSQSGKTTIANSVIIP SLLEEMNLPKTSVYSRPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEP YPLDMAYLHEKGMSMDSPLVVTTANTVKPPTNAGITDEASFFNRRAAVIEVRRKDNTH FTPRAYDNCIEVRFLHNKCAYVDSEGVPQGPTVNTPMEEGWISPSEAVATLKNLLGEH VLAEEEKLMDYRERIGNDHPIYNAAQEFIGNMHYPGEWIDADRKKTYEIEDEGFSFLA VDGKMYKYNVLGKLNPCAVPPTHPNVIPWLEERTLDKVHWDVHKHIATGPRNALVACF LQGLVQDQSYVQSVEIMGKDSSPEQQAFFKRLSLSERIYLRLCQIRIDKVKKEQLSGP SRGTLDVLRDCMAKSKAKLAENYSLLLTLVAVLVLIATAYSLISTLVGLAGCTSFAGG MVAMNQVSNASMPCSEPRLEERYSARNRFVSRISRVRGDGPAKGQGEHEELVTELYYY FDGVKRLISCCWFKGRSLLMTRHQALAIPVGNEVQVIYADGTDRKLIWPGKQEDGSCK GYIEFPENELVVFEHARLLTMPIKYEKYFVDDPDRQISPNVAVKCCVARLEEGLPQFH FWNKYATARSDVHTVVDEGGSAVYQNKIRRHIIYAHEAKRNDCGAIAVAEIQRTPKVI AMLVSGSGNVTYSSVIPNYSSSFVRGDVPYVPEDGIKTNGYRKVGYLMRKDAPHVPSK TAFMKVPDEICFPYPNPKQPAILSAEDDRLKGTVHEGYTPIRDGMKKFAEPMHLLDEK LLDEVAGDMVQTWFDVGEFLEDVPLNTAINGDVDEEYFDPMAMDTSEGYPEVLQRKAG EKGKARFFVGEPGAREFVPGCGPERAYLSLEEECKVRVPSLISIETPKDERLKRSKIE TPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLPCQVGINPYSREWTDLYHRLAE QSDIGYNCDYKGFDGLITEQILAVVATMINTGYRNPVSNQQRSNLLLAICGRLSICGN QVYETEAGIPSGCALTVVINSIFNELLMRYCFKKIVPPVYRECFDRCVVLITYGDDNV FTVSQSIMESFTGDALKAEMANVGVTITDGKDKSLATIPARPLLELEFLKRGIKKGNG GMIYAPLEKLSIMSSLVYIRSDGSDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYL EKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELER HDICPGLAISGARYIAKKEEILMSLSSLLPGDVNAHKLELKCGDGIGRLPSKASVLAQ RNPGIVMRLCKQALEEKKTLVIRDERPYIGGWAMACICGESFGFSIRSTLALYANLLG PDRKNGLAGYFSNFESPVHVKKVHAITNGEEGATELKEVFTLCEPKIVRASSCETRTE MLAHPSEAFPSVVLIGGISYPKEGGEPGALYSHTDVTMSKKNKGVYVSEAILKCCLRC PGVATKTVLQTTEIGSSLSKAHLKSLRRLQTHQCVRR" /product="polyprotein 1" ORIGIN 1 atgaaaaatc tctgtgagtt ctcatataaa cgtgaattta catcttttca aaccaagagt 61 ttaagaaact caaaattgtt ctttgccaat ccgttaagag cggaaacaaa gccaaatcgt 121 taagagcggt accaaacgaa gagtttaaga aactcattgc tttacttttc tgtattttta 181 cgccgtattt atttagtttt catattgttt cgttaaagct ttagccacta tgtggcaaat 241 ttctgagggt tcccagtgct gttgcactgg gaaatcctgg tccaatgccg aggccaaaga 301 ggcccggtat gtctgcgatt gtctcttcaa ttgcagactc gttaaagttg aggtagcgcc 361 tcaacccccg aagagcagga tagcgcctgc tcaacagaag aaggagagga tagcgcctct 421 tcaaaactcg aatggtagga tagcgcctac cacccccaaa tccaaaaggg cttctgtgcc 481 cgacgtgcct ttggtaaaac aaaggtgcga tgttgttgtg agggttggcc cgccggccaa 541 cctagagttg atataccctg ccctcgtgcg ggaagaggtg gcaaccccac ctactgaaaa 601 ggttctgcag cctaccataa aggctgatat cggggtgcca gtttctatgg caccaaaatg 661 gatggtggct atccctaagc cacccgttaa aactgctccc gaagtggaga aaacacagtt 721 cccaaaagga gctgtgtgct ataatggcac caactttttg gatgccaagg gaaaagtcgt 781 cctatctgag ggcgcaaaga gggttcttaa gggaatccgc gttgctaagc agcaacgtct 841 tagggctgca cgcagatctg ctgcgtgtaa gaaaatccgc aaggccaggg ctctggcttt 901 gtatgagcgc ttgtctgaag agcgcgcctt ccaggagctg cctggagggt ttgctggtga 961 aatgccagtt ggctttttta gctacggtaa aaccgtagcc attcccactg ccacccctaa 1021 aaaggtggtt tccaaaagaa agagggcctc aaagccttct actgttgctg ttccagtgca 1081 ggatttttcc tgcattgatg ccttcgactg gggggagaaa tccttctccg tcaaggaagt 1141 aattgaggat gactggatcc tcattgaaaa acctgtcctg aaaaggcagg ctgtacattc 1201 tgtgcagggg agggcaactg aagcccttac tagatttgcc gcctcaagcg gctttacagt 1261 taaagcccac caaaaggtgg aggagttagc cttgtctgga gaggctggcc atttgatcgc 1321 aggggaattt gcggatctct gcttaagatc tctggtgtac aatgacgcac ctgtgttgtc 1381 cgcctctatt gaagagcttg cctgtgagca agattttaaa gatgccattg agctcttcaa 1441 tattgaactt gctgaattgc caactgattc cactacttgt gggcggttta atgattgggc 1501 cgcttctgcc aaaactatgg caaaaggagt gggctctcta gttggtgatt tagcccgtgc 1561 gactggggcc ggtgcactta tcacttttga taagtgcctc gagtatttac aagagaaagc 1621 attgacactt tgccaaaaag tgtttaatgc caccatggcc ccctacctaa gtcaccttgc 1681 tgaagcttcc aatataataa agaaaatttg gaagaaactt ggtgagtgga tggaaagctt 1741 aaagggtaaa gctgggttgg ccttggaagt gcttgcacac catgccatct ttgctcttgg 1801 agctattgtt gtgggaggag ttattgtcct cgttgagaag gtgctagtag tctgcaaagt 1861 tattccctct tgtggaattg tgctaggtgc tttcttaact ctcttctttg ccagtcttgg 1921 attgactgct cttgagtgta ccgctgatga gatttttaaa atgcatcagt gctgtaaagg 1981 tgctatttat agcatgtact cagtgaagga gcctgtgtgt gaaggtgaag gagactccac 2041 aacaagggga gttttacagg ggctagacaa tgccatatct gccctgacaa gagtcggtca 2101 aagcatgatt agcttcaagc ttgggagctt ttcctactat gctaagatcg cccaaggatt 2161 tgatcaactt gctcgaggaa aaagagcgat aggtgaactt gctagttggc tcattgatct 2221 tgtgggaagt gtttattcta aagtctctgg acaggaaagc actttctttg atgagttatc 2281 tacgatagtt tgccttgacg ttagatcgtg gctactgaaa agtaagcgcg tgagactgca 2341 agttgaaaca atggctattg gagatagaat aacgcttgat actatctcta aattgctgga 2401 agaaggtcat aaaatccttg tgactgctgc tggtgtgccc aggaaaacct ctgcagattt 2461 tacaatgtgc atcaaagagg aggtttccaa gttggaagag gtacatcaaa gaactgcctg 2521 cgccggtata aatgaaggta tgcgccagtt tccattctgg gtatacattt ttggcacttc 2581 acagtctggg aagactacta ttgcaaattc tgtcatcatt ccttctttgc tagaagagat 2641 gaatcttccc aagacttctg tgtactctag gcccaagaca gggggtttct ggagtggata 2701 tgctagacag gcgtgtgtta aagttgacga cttttatgct attgagcaaa cgcctagtct 2761 agcttcttct atgatagatg tggtgaattc tgaaccatat ccattggaca tggcctattt 2821 gcatgaaaag ggcatgtcta tggattcacc acttgttgtg accactgcta atacggtgaa 2881 gcctcctacc aatgctggta ttactgatga ggcctctttc tttaaccgtc gcgctgcagt 2941 catagaagtg aggagaaaag acaataccca ctttacaccc cgtgcatatg acaattgcat 3001 tgaagtgagg tttctgcaca acaagtgtgc atatgttgat tcggagggtg ttccccaggg 3061 gcctactgtc aataccccca tggaagaagg atggatttct cccagtgaag ctgtcgctac 3121 attgaaaaat ttgttgggag aacacgttct tgctgaagaa gagaagctga tggactacag 3181 agaaaggatt ggtaatgacc atcctatcta taatgcagct caagaattca taggtaatat 3241 gcattatcct ggagagtgga tagatgctga tcgcaagaaa acctatgaaa ttgaagatga 3301 agggttttct ttccttgctg tcgatggaaa gatgtataag tacaatgtac tcgggaaatt 3361 aaacccttgt gccgtgcctc caacacatcc caatgttatt ccctggttag aggagagaac 3421 attagacaag gtacattggg atgtgcataa acatatagcc actggtccca ggaatgctct 3481 cgtggcctgc tttctgcagg gtctcgtaca ggatcagagc tatgttcaga gtgtggagat 3541 tatgggcaaa gacagctcgc cggaacagca agcctttttc aaacgattga gcctatctga 3601 gaggatttat ctcagattgt gccagattcg gattgataag gtcaagaaag agcaattgag 3661 tgggccttca agaggaacct tagatgtcct gcgagactgt atggccaaga gtaaagctaa 3721 gcttgctgag aattattctc ttttacttac tctagttgca gttctggtac taattgccac 3781 ggcctactcg ttgatctcca cactagttgg tctagccggg tgtacaagtt ttgctggagg 3841 tatggtagcg atgaatcaag tttcaaatgc ttctatgcca tgttcagaac cccggttgga 3901 ggaaagatac tctgctagaa atcgttttgt gtcgcggatt tctagggtta gaggagacgg 3961 cccggccaag ggccagggag aacatgagga attagttact gagctctatt attattttga 4021 tggagtgaag agattgattt cttgttgttg gtttaaaggg cgctcccttc taatgacaag 4081 acaccaagcg ttggccattc ctgtcggaaa tgaagtgcaa gttatctatg ctgatggcac 4141 tgataggaaa ctcatatggc cagggaaaca agaagatgga tcatgcaaag ggtacattga 4201 attccctgaa aatgaacttg tagtgtttga gcacgctcgt cttttgacga tgcccatcaa 4261 atatgagaag tactttgttg atgatcctga tcgccaaatc tctcccaatg ttgcggtgaa 4321 atgctgcgta gctcgacttg aggaggggct cccccagttc catttttgga ataagtatgc 4381 caccgctagg agtgacgtgc atactgttgt tgatgaaggg gggagtgcag tgtaccagaa 4441 caagatcaga aggcatatta tatatgccca tgaagcaaaa agaaatgatt gcggggctat 4501 tgctgttgct gaaatacagc gtacccctaa agttattgca atgttggtct ctggttctgg 4561 gaatgtgacc tattcttctg tgataccaaa ttacagttca tcctttgtta ggggtgatgt 4621 gccttacgtg ccagaagatg ggattaaaac taatgggtat aggaaagttg ggtatttaat 4681 gcgaaaagat gccccgcatg ttccaagcaa gacggcattt atgaaagtgc cggacgaaat 4741 atgctttcct tatccaaatc cgaagcagcc tgccatccta agcgccgaag atgatcgact 4801 aaagggtact gtccatgaag ggtatacccc gatacgggat ggcatgaaga agtttgctga 4861 accaatgcac ctacttgatg agaaattact tgatgaagtg gcgggtgaca tggttcaaac 4921 gtggttcgac gttggggaat ttttagaaga cgtgcctcta aacactgcta ttaacggtga 4981 tgttgatgag gaatattttg accccatggc catggataca tctgaaggat atcctgaagt 5041 ccttcagcga aaagcgggag agaagggtaa agcccgattc tttgttgggg aacccggagc 5101 acgtgaattt gtgcccgggt gtggacctga aagagcttat ttgagtctag aagaggaatg 5161 caaagtgcgt gtcccttctc ttataagtat tgaaacccca aaagatgaaa ggcttaagag 5221 atctaagatt gaaactcctg gtactaggtt gttttctgtt ttacctttgg catacaacct 5281 actattgaga gtaaaatttt tgtctttctc tcgtttgtta atgaagaaga gaagccacct 5341 accctgccaa gtaggcatca acccgtatag tcgcgagtgg actgatctgt accatcgtct 5401 ggcagaacag tcagacattg gatacaattg cgactataag ggatttgatg gtctaatcac 5461 agagcaaatt ttggccgttg ttgcaacaat gataaataca gggtatcgca accccgttag 5521 taatcagcaa cgatccaatc ttttgttagc tatatgtggt cgactctcaa tttgtggaaa 5581 ccaggtttat gaaacggaag ctggtattcc ttcaggatgt gcattaacag ttgttataaa 5641 ctctatattc aatgaactgt taatgcgtta ctgtttcaag aagattgttc ctccagtcta 5701 ccgggaatgc tttgatagat gtgttgtgtt aatcacctat ggtgatgaca atgtttttac 5761 tgtctcacag tctatcatgg aaagcttcac cggagatgcg cttaaagccg agatggctaa 5821 tgtaggagtt acaattactg atggtaaaga caaaagtctt gccacaattc cagcgcgccc 5881 actactggaa ttggaatttt tgaagcgtgg gatcaagaag ggaaatggag gcatgattta 5941 tgctcccctt gaaaaactgt ccatcatgag ctcacttgtg tacattcgta gtgatggatc 6001 agatatgctg cagaagcttg tcgacaatgt aaatactgct ttagtcgagt tgtttttgca 6061 ccaggataag gagtattttg acagtgtccg caatttctac cttgagaagc ttcccccagg 6121 atcttataaa gaattgacaa catggtatca ggctcaaacc tttcatgaat gtcaacttag 6181 cggggaaagt aattggaaac cccagggact aatagagatt agtcatggtg ttggttttgc 6241 cagttttgtt caacaagatg gaacggagtt ggaacgccat gacatttgtc ctgggttggc 6301 tatatctgga gctagatata ttgccaagaa agaagagata ctgatgtctc ttagctccct 6361 tttgccaggt gatgtcaatg cgcacaaact tgaattaaaa tgtggtgatg gtattggccg 6421 tctcccttcc aaagctagtg tgttggccca gaggaatcct ggaattgtaa tgcggttgtg 6481 taagcaagcc cttgaagaga aaaaaaccct cgtcattcgt gatgagagac cttacattgg 6541 aggatgggct atggcttgca tttgtggaga gagttttggc ttttccatca ggagcaccct 6601 ggcattatat gccaatctgt taggtcctga tcggaaaaat ggattggctg gttatttttc 6661 gaattttgaa agtccagtcc atgtgaagaa agttcatgcc attactaatg gagaggaagg 6721 agccactgag ttgaaagagg ttttcacctt gtgtgaacca aagattgtta gggcttcttc 6781 ttgtgaaacg agaacggaaa tgttggctca cccatctgag gcatttccca gtgtggttct 6841 gattggggga attagctacc ctaaggaagg tggggaacct ggagctttat actcccacac 6901 tgatgttact atgtccaaga agaataaggg cgtgtacgtc agtgaggcca ttttgaagtg 6961 ttgtctgaga tgtcctggtg tcgccaccaa gacggttctc cagactactg aaattgggag 7021 tagtctttct aaagctcatt tgaagagttt gcgccgatta caaacgcacc agtgtgtgcg 7081 taggtagctc ttcaccaaga atggtactgg gataaccatc aataaataac ccagttttcg 7141 tactgctcat gctcttgtgg gtacgtcata tttagagcaa tttgtgttat atttatattt 7201 agcttgttta ctgcttttgt gtgtttaatt tcatgcattt agtggcgaca gtgtgttgtt 7261 tgtcctttgg acgcacttgc cttgttggac gcaaaaagat tttacttttc tttttactgc 7321 ttttgtattt tttc //