LOCUS X81815 3711 bp RNA linear VRL 10-FEB-1999 DEFINITION Arabis mosaic virus RNA for polyprotein P2-L. ACCESSION X81815 VERSION X81815.1 KEYWORDS coat protein; polyprotein P2; RNA2-L gene. SOURCE Arabis mosaic virus ORGANISM Arabis mosaic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Secoviridae; Comovirinae; Nepovirus. REFERENCE 1 AUTHORS Loudes,A.M., Ritzenthaler,C., Pinck,M., Serghini,M.A. and Pinck,L. TITLE The 119 kDa and 124 kDa polyproteins of arabis mosaic nepovirus (isolate S) are encoded by two distinct RNA2 species JOURNAL J. Gen. Virol. 76 (PT 4), 899-906 (1995) PUBMED 9049336 REFERENCE 2 (bases 1 to 3711) AUTHORS Pinck,L. TITLE Direct Submission JOURNAL Submitted (21-SEP-1994) L. Pinck, Inst. de Biologie Moleculaire des Plantes IBMP, 12 rue General Zimmer, 67084 Strasbourg Cedex, FRANCE FEATURES Location/Qualifiers source 1..3711 /variety="RNA2-L" /mol_type="genomic RNA" /db_xref="taxon:12271" /isolate="S" /organism="Arabis mosaic virus" gene 261..3515 /gene="RNA2-L" CDS 261..3515 /db_xref="GOA:Q65029" /db_xref="InterPro:IPR005054" /db_xref="InterPro:IPR005305" /db_xref="InterPro:IPR005306" /db_xref="InterPro:IPR021081" /db_xref="UniProtKB/TrEMBL:Q65029" /codon_start=1 /protein_id="CAA57413.1" /gene="RNA2-L" /translation="MGILYSCYRRFACQPVVDVPYIRPTTFLEARASMRIAQAEGAAA ALFAELPLEYPQGVPLVQPTEPVKAQEVMVPPVRVIPSPPPVPRPYSRPIGAFAPTRS GFIRATMERLTREREESRAAALFAELPLEYPQGAPLVVPRGFAAMRWTYHATWRRWYD TSDERPLRAHPGGPALPPPSPPPKIQKPPSFEERLQAALQRQSCARAFALETSLGPNM AWVGMAAIPSISVCCADGRTTGGQTIAQEADPINHRVASNTAPGRAQWISERRSALRR REQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPPLRNAYAPRGLWRGPSTR ANYTLDFRLNGIPTGQNTLEILYNPVADEEMDDYRDRGMSAVVIDALEIAINPFGMPG NPTDLTVVATYGHERNMERAFIGSSSTFLGNGLARAIFFPGLQYSQEEPRRESLIRLY VASTNATVDADSILAAISVGTLRQHIGSLHNRTVASSVHRAQWQGTTLRATMMGNAVV VSPEGSLVAGTPEANVQIGGGSSMRMVGPLAWENVEEPGQTFTIRNRSRSMRVDRNAD VGVALPRMSTTTRGLAGRDSVQVPKDCQAGKYLKTLDLREMVSGFSGIQYEKWITAGI VMPDFKVVIRYPANAFTGITWVMSFDAYNRITSSISTTASPAYTLSVPHWLLHHKNGT TSCDLDYGELCGHAMWFGATTFESPKLHFTCLTGNNKELAADWEFVVELYAEFEAAKS FLGKPNFIYSADAFNGSLKFLTIPPLEYDLSATSAYKSVSLLLGQTLVDGTHKVYNFN NTLLSYYLGIGGIVKGKVHVCSPCTYGIVLRVVSEWNGVTNNWNQLFKYPGCYIEEDG SFAIEIRSPYHRTPLRLIDAQSASSFTSTLNFYAISGPIAPSGETAKMPVVVQIEEIA LPGLSVPSFPNDYFLWVDFSSFTVDVEEYVIGSRFFDISSTTSTVALGDNPFAHMIAC HGLHHGILDLKLMWDLEGEFGKSAGGVTITKLCGDKATGMDGASRVCALQNMGCETEL YIGNYAGANPNTALSLYSRWLAIKLDKAKSMKMLRILCKPRGNFEFYGRTCFKV" /product="polyprotein P2' 119KDa" mat_peptide 261..959 /gene="RNA2-L" /product="N-terminal 26KDa protein" mat_peptide 960..1997 /gene="RNA2-L" /product="central putative movement 38KDa protein" mat_peptide 1998..3512 /gene="RNA2-L" /product="C-terminal coat 55.8KDa protein" ORIGIN 1 atgaaaattt ttgtggagtt ttcatataaa cgcaatccac aaccctttca accaagagtt 61 taggaaactc aaaattgttt acaatcaatc cgttaagagc ggaaacaaag tcaaaccgtt 121 aggagcggtg ccaaagcgaa gagtttaaga aactcacaat cttcttcttt ttctttctta 181 cttacgtgct ttatttattt agcgtttgtg tagtctgctt ctttggagaa gcgttttgtt 241 ttcttttctt ctcagccctt atgggtattt tgtattcttg ctacaggcgt tttgcctgtc 301 agcctgtggt ggatgttcct tacatccgcc ctacaacttt tctggaagca agggcatcca 361 tgcggattgc tcaagctgaa ggagcagctg cggcactgtt tgccgaattg ccactggagt 421 atcctcaggg agttccccta gtgcagccga ccgagccggt taaagctcaa gaggtgatgg 481 tgccacctgt gagggtaatt ccttcaccgc cccctgtacc aaggccttat tctaggccaa 541 ttggggcttt tgcaccaacc cggtccgggt ttatacgggc caccatggaa agactcaccc 601 gggaacggga agagtcacga gctgcggcac tctttgccga attgcctttg gagtatcctc 661 aaggtgctcc attggttgtc cctcgtggct ttgcggccat gcggtggact tatcatgcca 721 cctggaggcg gtggtatgac actagtgatg agcggccttt gcgtgctcat cctggtggtc 781 ctgctttgcc tccaccctcc ccccccccaa aaatccaaaa accaccctct tttgaggaga 841 ggttgcaggc tgcccttcaa aggcagtcct gtgccagggc ttttgctctg gagacttcgc 901 tgggccctaa tatggcctgg gtgggaatgg ctgccatccc cagcatttct gtgtgctgcg 961 ctgatggtag gactaccggt gggcaaacaa ttgcccagga ggctgaccct attaatcata 1021 gggttgcttc taacacagcc cccggtaggg ctcaatggat ctcggagcgc cgcagtgctc 1081 tgaggagaag agagcaggct aatagcttgc agggtcttgc tgctcaaact gacatgacat 1141 ttgagcaggc caggaatgcg tatcttggtg ctgctgatat gattgagcaa ggcctaccat 1201 tattgcctcc actgagaaat gcctatgcac ctcgtggtct atggagggga ccttccacca 1261 gagccaacta cactttggat tttaggctca atggaattcc cacgggacaa aatactctag 1321 aaatattgta taatcccgtg gcagacgagg agatggatga ctaccgtgac aggggtatgt 1381 cagcagtcgt gattgatgcg ctagaaatcg ctattaatcc ttttggaatg ccaggcaatc 1441 cgactgatct tactgtcgta gcaacatatg ggcacgagcg taatatggaa cgtgccttca 1501 ttggttcttc ttcaaccttt cttggaaatg ggttggcgag agccattttc tttcctggtt 1561 tacagtatag ccaggaggaa cctaggcgcg aatctttgat tcgtctttat gttgcctcta 1621 caaacgccac tgtcgatgct gattctatat tagcagccat tagtgtaggt actttacgcc 1681 agcacattgg ttcgcttcac aatagaacgg tggcgagttc tgtacatcgt gcgcaatggc 1741 agggcactac tttgagagct actatgatgg gtaatgccgt cgtggtttct cctgaaggaa 1801 gtcttgttgc tggaacccct gaagctaatg tccaaattgg gggtggttcc agtatgcgca 1861 tggtaggtcc cctggcatgg gaaaatgttg aagaaccagg gcagaccttt actataagaa 1921 accgctcccg atctatgcga gtagatcgga atgctgatgt tggagttgct cttcctagaa 1981 tgagtacaac aacgcggggt cttgctggta gggattctgt tcaggtgcct aaagattgcc 2041 aagcgggaaa atacttgaaa acccttgacc ttagagaaat ggtaagcggg ttttcaggta 2101 ttcagtatga gaagtggatc actgctggaa ttgtaatgcc agatttcaaa gtggtgattc 2161 gctatccagc caatgccttt acaggtatta cgtgggttat gagttttgat gcttacaacc 2221 gaattactag tagtatttca actactgcta gtcccgcgta tacactgtcc gtccctcatt 2281 ggcttttgca ccataaaaat gggacgacct catgtgattt ggactatggg gaactttgtg 2341 gacatgcgat gtggtttgga gccacaactt ttgaaagtcc caaacttcat ttcacgtgcc 2401 tcactggaaa taacaaagag ttggcagcgg attgggagtt cgttgtcgaa ttatatgctg 2461 agtttgaggc agcaaagagt tttcttggga agcccaactt catttatagc gctgacgctt 2521 ttaatgggtc tctcaagttt ctgactatcc caccactgga atatgactta agtgcaacca 2581 gtgcctacaa gagtgtgtcc ctgttattgg ggcagactct tgttgacggt actcataagg 2641 tgtataattt taataataca ctcttgagtt actatttagg cattgggggt attgtcaagg 2701 gaaaggtgca tgtttgtagc ccttgcactt atggcatagt cctaagagtt gttagtgaat 2761 ggaacggggt cactaacaac tggaatcaac tgtttaaata ccccgggtgt tacatcgagg 2821 aggatgggag ctttgctatt gaaatacgct ccccctacca ccgaactcca cttcgcttaa 2881 ttgacgcgca atcagcaagc tcttttacga gtacgttgaa tttttacgca atctcagggc 2941 ccatagcccc aagtggagaa acagcgaaga tgccagtagt cgtgcaaatt gaagaaatcg 3001 cacttccggg tctttctgtg ccatccttcc ccaatgatta tttcctttgg gttgactttt 3061 catcattcac tgtggatgtt gaagagtatg tgatagggtc gaggtttttc gatatttcct 3121 ctactactag cactgtagcc cttggagaca atccttttgc ccatatgata gcttgtcatg 3181 gactccatca tggaatcctt gatcttaagt taatgtggga tttggagggt gagtttggaa 3241 agagtgctgg tggtgttacc atcacgaaat tgtgtggtga taaggccact ggcatggatg 3301 gagcatctcg tgtttgtgct ttacaaaaca tggggtgtga aactgagcta tacataggga 3361 attatgcggg tgctaaccca aatactgcat tatccttgta tagtcgatgg cttgctatta 3421 agcttgataa agctaagagc atgaaaatgc ttagaatttt gtgcaagcct cgagggaatt 3481 tcgaatttta tggccggacg tgctttaaag tttaaattcc ctcccgtgtc tcgggaatct 3541 gacgttaaaa gacccaattt gcgatatatt tatatttagc ttgtttactg ctttagtgtg 3601 tttaatttca tgcttatagt ggcgacagtg tgttgtttgt cctttggaca cgcttgcctt 3661 gttggacata aaaagatttt tcttttcttt ttactgcttt tgtaactata t //