LOCUS NC_032104 7599 bp RNA linear VRL 14-DEC-2016 DEFINITION Arachis pintoi virus isolate Var A RdRp, TGBp1, TGBp2, 40 kDa protein, and CP genes, complete cds. ACCESSION NC_032104 VERSION NC_032104.1 DBSOURCE BioProject accession PRJNA357486 KEYWORDS RefSeq. SOURCE Arachis pintoi virus ORGANISM Arachis pintoi virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Alphaflexiviridae; unclassified Alphaflexiviridae. REFERENCE 1 (bases 1 to 7599) AUTHORS Gutierrez Sanchez,P.A., Jaramillo Mesa,H. and Marin Montoya,M.A. TITLE Next generation sequence analysis of the forage peanut (Arachis pintoi) virome JOURNAL Rev Fac Nac Agron Medellin 69 (2), 7881-7891 (2016) REFERENCE 2 (bases 1 to 7599) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (14-DEC-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 7599) AUTHORS Gutierrez,P.A., Jaramillo,H. and Marin,M. TITLE Direct Submission JOURNAL Submitted (08-APR-2016) Biociencias, Universidad Nacional de Colombia sede Medellin, Cl. 67 #53. Laboratorio de Microbiologia Industrial 19-312, Medellin, Antioquia NA, Colombia COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KX058345. ##Assembly-Data-START## Assembly Method :: Trinity v. 1 Sequencing Technology :: Illumina ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..7599 /mol_type="genomic RNA" /country="Colombia" /collection_date="14-Dec-2014" /host="Arachis pintoi" /db_xref="taxon:1921009" /isolate="Var A" /organism="Arachis pintoi virus" gene 129..4307 /locus_tag="BTU57_gp1" /db_xref="GeneID:30522830" CDS 129..4307 /locus_tag="BTU57_gp1" /db_xref="GeneID:30522830" /codon_start=1 /protein_id="YP_009328892.1" /translation="MATSVRKLLDQVSDPSTKAAYSELCFKHAKDAATKAQRVAPFAV TDQEALTLERLGITTSPFATTSHTHAGDKIIENDCLSLIGSYLPKAAVTMIQLKRSKI HLMNRGPNQDVFANYCHEPKDVLRYGITNPGACPRVHTEYAVLADTLHFMSTKQLLTL FLKNPKLQRLFATLVLPIEALHRLPSLFPEIYRLEYYKEHFAYMPGGHGGGAYVHSYA TLNWLSTGQVGTHTNNVLSVGYPDYLSLEKIETKAAHHVMLIQRRRVNVPWPVAPLWV FHASDYVRLPQVYYPPEANVQNTYPHDLIKRMQAYCLSVKAVSLRDIFAKLRQVIETQ DLKRYSMADLIRLANYLLLTTAMEHVSDYECLLTKGWVAKLSARIQMRVRSMLESIRG KTSYSALLSVADVIPVPFTTVPIRRPSTGLGWEAGDSDQEDPKEDMPGQDAGPDLEDL ELVAQFDENPAKSGADEEGHRDDHSQIVDELERALHTTSPPSASSEDDDSREDPNKER SNCTAQLPGSTSGASLDTPTVEILKLHGFTALKPQWDGESWIQPVYFNPTNGKLPISP LQDSSHEVAKLAHSIRRNLYQYTVDNKRAASYMSDVKNNLTGLVLPKLDRDKLSAWVS LCENAERHISILVIHGAGGAGKSRCLQEALRDSKELAENVNVIVPTVNLVLDWKKKMN AMDPRRFMTFEKACEREAKEVAIFDDYGKLPAGYIDAYVAIKPTVEIVILTGDQRQSV YHNGNKDAQTANLTDNVTHFRKFCDYYVNATHRQPRRIANPIKVHAERQFGGAVTMAN LIQDKATVLVPAYRTQSALTDLGRQAYTYSGCQGLTISDVTIALDNDTPLCSNEVLYT AFSRASESITFVNTHSDNPDFLAKLDSTPYLKTLITGVREDERAGHAEPPAETTPQEP EVKTHLPVTNGDVALEEKIEAVEDKDTRELWDGQEKTNLMQTQDPIIQLFPHQQAKDE PLFKLTIEKRIRTASASENQKAIAKSCNAGDLLFEAYADFMKVPKEPQNFDRDLWLHC KQLALRTYLSKPTSNLQQGATRQDPDFPEAAIALFNKSQWVKKLEKVGFKFKPGQTIS AFKQSTVLLTTTMALYLRKKREEHQPDNVFIMCEKTPDQFNDFVITRWDFSRPSYTSD YEQYDQSQDAAFLNFELRKARHLGVPEEILSFYKFVKIHAKTFVGNLAIMRLSGEGPT FDANTECNIAYDALRFRLDTNVNACYAGDDLVRDKVCDERPSWQYTQHLFSLKAKPLA TNKPDFCGWRLTKYGIIKSPIQLYQSLQLALRLNKMDEVRRSYAIDYQYAYRLQDKLF EVFDEREMDHHQLATRLLIKKGARVPDIGNHLPMHHVTSDRLIRNPHYKEMHDAESDR IYMVAPSLTENHFT" /product="RdRp" /note="ORF1" gene 4396..5109 /locus_tag="BTU57_gp2" /db_xref="GeneID:30522826" CDS 4396..5109 /locus_tag="BTU57_gp2" /db_xref="GeneID:30522826" /codon_start=1 /protein_id="YP_009328893.1" /translation="MSLTQLEDRLITAGFTRTNQPLAYPIVVHGVPGCGKSTLIKTLI EIVGFKAATTTQPYGRTLSSCGVTSHPLEDHQRATIRILDEYQNVAPTEWEKYQVLIG DPFQGPYSSVAHYVKATSHRVPKQVADFLRARSFDIYSDKEGSLTTTNPYSPKVAQQF QNATILHLGPISKQLLQSHSVPSICWKEFAGQEDRSVTLVYHSTELQERTGFYVAATR ALENLTLVSDEFNEFHTTP" /product="TGBp1" /note="ORF2" gene 5087..5407 /locus_tag="BTU57_gp3" /db_xref="GeneID:30522827" CDS 5087..5407 /locus_tag="BTU57_gp3" /db_xref="GeneID:30522827" /codon_start=1 /protein_id="YP_009328894.1" /translation="MSFTPPPDYTKVWIAAAVGGSIAFISFILVQDRTPHVGDNIHHL PHGGSYQDGNKRVLYQGPAHRGANKSSWAPAAAVLLLSLAILASELSKRRRRVHHCVT CTTR" /product="TGBp2" /note="ORF3" gene 5509..6597 /locus_tag="BTU57_gp4" /db_xref="GeneID:30522828" CDS 5509..6597 /locus_tag="BTU57_gp4" /db_xref="GeneID:30522828" /codon_start=1 /protein_id="YP_009328895.1" /translation="MTFVTLDQYLEQVNRTNQKIQQIQDTLHNNPWLSSNNHLEWLRA IQRDIIRAQDSIQRLDVVRLDTPRLVSMVTQLVTSSQSINQQPASRDTSERVFFSNLN NAVDAATTLLSNVPGGTYDVQYNPLPIEELYGFINALHANTITWMKHLESLTNAAIGR IDTRLSYNRHREDHQLMTTKVDDINESLRQMVTEVSRLAGASANEATMQSLISQLQEL SNSIGQTAPNATLQELVRLVQQLQPTNSNSSLMEAHRRLPSYEPQHPSLPCRTHGILK FDDVVTRLPMDVQGRAVSTTLELRSTIGKRPDATEIKFALYDAGVLLVSRHVTTNSRL TSLPGDLLSVVHEHCPRFVYRLTHSGLC" /product="40 kDa protein" /note="ORF4" gene 6650..7345 /locus_tag="BTU57_gp5" /db_xref="GeneID:30522829" CDS 6650..7345 /locus_tag="BTU57_gp5" /db_xref="GeneID:30522829" /codon_start=1 /protein_id="YP_009328896.1" /translation="MASNAPRPEDSARPISGAVPNTPPNNQSRPETSAPTRDPLLPSR EEMQLVTRDVQANKIASRQQVEAILQQLRGGNVNDLMSLVWACFHNGSSRLTTLRGQS PSGLELSYIKDVVEEHCTLRQFCTFYAKVCYNTAKELKTPPANWASKGFKEDTQYAAF DFFSGTMSPAAITPEGGMKYKPTPDEIKAHSANALMAIIDSRDQADQYSTRGNMLAMR QERAPPPPLITFQ" /product="CP" /note="ORF5" ORIGIN 1 atcccgacta cctgtctttg gaaaaaaacg aaaactaaac attccaagac agcacgaaac 61 aacacagcac taaactgtac attcagtgat aaagaaacct agcgaggcct tgaacactgt 121 ctgttagtat ggctaccagc gtgcgaaaac tcctagacca agtgtctgac ccctccacaa 181 aagcagccta ttccgaactc tgcttcaagc atgctaaaga cgccgcgact aaagcccaac 241 gagtggctcc attcgcggtg actgatcagg aagctttaac gctagagaga ttaggcatca 301 ccacctcccc cttcgccacc acctcacaca cccacgcagg tgataaaatc atagagaatg 361 actgcctatc cctaataggg tcgtacctac ccaaagctgc agtcactatg attcaattaa 421 aacgtagcaa aatccacctg atgaatagag ggcccaacca agacgtcttc gccaactact 481 gccacgagcc caaggacgtg ttacgctacg gcataaccaa tccaggcgct tgccctcgcg 541 tacacactga atacgcagtc ttggcagaca ccctccactt catgtcaaca aagcaactgt 601 tgaccttatt ccttaagaat ccaaagttgc aaagactgtt tgcaacactt gtgctgccaa 661 tcgaagccct ccaccgccta ccatccttgt tcccggagat atatcgttta gaatactata 721 aggaacattt cgcttacatg cctggcgggc acggtggagg agcttacgtg cactcctacg 781 caaccctcaa ctggctgtcc actggccaag tcggaacaca cactaacaat gtcttatccg 841 tagggtatcc cgactacctg tctttggaaa aaatcgaaac taaagcagca caccacgtga 901 tgctgattca aagaagacgt gtcaacgtcc catggccagt cgctccccta tgggtattcc 961 acgcgtctga ctacgtacgc ttacctcaag tgtactaccc cccggaggcc aacgttcaga 1021 acacctaccc tcatgacttg atcaagagga tgcaagccta ctgtttatca gttaaggccg 1081 tctcactcag agacatcttc gccaagctgc gacaagtcat cgagactcaa gacctcaaac 1141 gttactccat ggcagatttg atacgactag ccaactatct tctattaacc accgccatgg 1201 agcatgtttc agactatgaa tgccttctca ccaaaggctg ggtagcaaaa ctgagcgccc 1261 ggattcagat gcgggtgcgc agcatgctcg aaagcatcag aggtaaaacc tcttactcag 1321 cccttctctc agtggctgat gtgataccag ttccttttac caccgtaccc atcagacgcc 1381 cgtccacggg cttgggatgg gaggcaggag actctgacca agaggaccca aaggaagaca 1441 tgcccggcca ggacgcgggc cctgacttgg aagacctaga actggtggca caatttgatg 1501 agaacccggc caaaagtgga gctgacgaag agggccaccg ggacgaccac agccaaatcg 1561 ttgatgagct tgagagagca ctgcacacaa cttccccccc cagcgcaagc tcagaagacg 1621 atgactcccg agaagatcca aacaaagaaa gaagcaattg cacggcccaa ctaccaggat 1681 ccacaagcgg cgccagcttg gacacaccca cggtggaaat cctaaaacta catgggttta 1741 cagctcttaa accccaatgg gacggcgaga gttggatcca acccgtatac ttcaacccca 1801 ccaacggcaa actacctatc agtccactgc aagactcaag ccatgaagtc gctaagctgg 1861 cccactcaat caggaggaac ctgtaccaat acactgtgga caacaagagg gcagcctcct 1921 atatgtctga cgtcaagaac aacctcacgg ggctagtgtt gccaaagctg gatagagaca 1981 aactctccgc atgggtgagc ctctgcgaga atgctgagcg ccacatttcc attctggtca 2041 tccacggagc gggcggagcc ggaaaaagcc gttgtcttca ggaagcacta cgagacagca 2101 aggaattagc cgaaaacgtg aacgtcatag tccccacagt caacctggtg ctagactgga 2161 aaaagaaaat gaatgccatg gatcctcggc gatttatgac tttcgagaaa gcctgtgaaa 2221 gggaagccaa agaggtggcc atatttgacg actatggcaa gctaccagct ggatatatcg 2281 atgcttacgt tgcaatcaag cccaccgttg agattgtcat actgacaggc gaccaaaggc 2341 agtcagtcta ccacaatggc aacaaagatg cacaaactgc caacctgact gacaatgtca 2401 cacactttag gaaattctgt gactattacg tcaatgccac ccatcggcag cccagaagaa 2461 tcgccaatcc catcaaagtg cacgccgaaa gacaatttgg gggagctgtc acgatggcca 2521 acttgataca agacaaggcc accgtcctgg taccagcgta tcggacgcag agcgccctca 2581 cagaccttgg tcgccaggct tacacctact caggatgtca agggctaaca atcagcgacg 2641 tcaccatagc cctagacaac gacaccccac tttgttcgaa tgaggtgctg tacaccgcct 2701 tctctagagc atctgagagc atcaccttcg tcaacaccca ctcggacaac cctgacttct 2761 tggccaaatt agatagcacc ccatatctca aaaccctcat caccggggtt cgtgaagatg 2821 agagagccgg ccatgcggaa cctccggcgg aaacaacgcc ccaggaacca gaagtcaaaa 2881 cccacctacc agtgacaaat ggggacgtcg ctcttgaaga gaagatagaa gcagtagagg 2941 acaaagacac aagagaactc tgggacgggc aggaaaaaac caaccttatg cagacccaag 3001 atcccatcat acaactgttt ccccaccagc aggccaaaga tgagccactg ttcaagttaa 3061 caattgagaa aagaattcgc acggcatcgg caagcgaaaa ccagaaagcc attgctaaga 3121 gctgcaacgc gggagacttg ctgttcgagg cgtatgctga cttcatgaaa gtacccaaag 3181 aaccgcaaaa cttcgaccgg gatttgtggc ttcattgcaa acaattggcg ctgaggacct 3241 acctgagcaa gcccacaagc aacttgcagc agggggcgac ccgccaagac ccagatttcc 3301 cagaagcggc cattgctctg ttcaacaagt cgcagtgggt caagaaactt gagaaggtag 3361 ggttcaagtt caaaccgggc caaaccattt cggccttcaa acaatcaact gttttgctga 3421 ccaccactat ggcactgtac ctcagaaaga aaagggaaga gcatcagcca gacaatgtgt 3481 ttatcatgtg tgagaagact ccagaccaat tcaatgactt tgtgataacc agatgggact 3541 tttcacgacc ctcttacaca tctgactatg agcagtacga tcaatcacaa gacgcagcct 3601 tcctcaactt tgagctaaga aaagctagac accttggggt acctgaggag atcctcagtt 3661 tttataagtt tgttaaaatt catgccaaga cttttgtcgg caacttggcc ataatgagac 3721 tcagcggcga ggggcccacc ttcgatgcca acaccgaatg caacatagca tacgacgctc 3781 tgaggttccg tctcgacacc aacgtcaatg cgtgttacgc tggcgacgac cttgtgaggg 3841 acaaagtttg cgatgaacgg cccagttggc aatacaccca acatcttttt tctctcaagg 3901 ccaaacccct tgccacaaac aaacctgatt tctgcgggtg gaggctaacc aagtatggga 3961 tcatcaaatc cccaatccag ttgtaccagt cattgcagtt ggctctcaga ctcaacaaaa 4021 tggacgaagt caggcgcagt tatgccattg actaccagta tgcgtatcgg ctgcaagaca 4081 aactgtttga agtttttgat gagcgtgaga tggaccatca ccagctggcc accaggctgc 4141 taattaagaa aggcgctcga gtcccagaca ttggaaatca tctacccatg caccatgtca 4201 cctcagacag acttatcaga aacccacatt ataaggagat gcatgatgct gagagtgaca 4261 ggatctacat ggtcgctcct tctctgactg aaaatcactt cacttgagac actgactgac 4321 acactgaccg ctaaccctga ggactgcttt atgtttagag cttattgcga ataactgacg 4381 tagccctcca cactaatgag tttgacgcag cttgaagata ggttaatcac agcaggcttc 4441 accaggacta accagccctt agcttaccca attgtcgtgc acggcgttcc gggctgtggc 4501 aaaagcaccc ttattaagac cctcattgag attgtcggat tcaaagccgc cacaacgaca 4561 caaccatacg gcaggacact ttccagctgc ggggtcacgt cacatccact agaggaccac 4621 caaagagcca ccattcgaat cctggacgag taccagaacg tcgcgccaac tgagtgggag 4681 aaataccaag tcctaatcgg tgaccctttc caaggcccct actcctccgt cgctcattac 4741 gtgaaagcca cctcgcacag agtgcccaag caagtcgcag atttcctgcg agccagaagt 4801 tttgacattt acagtgacaa ggagggtagc ctcaccacca ccaaccctta ctcacccaaa 4861 gtggcccaac agttccaaaa cgccaccatt ttgcatcttg gacccatctc aaagcaactg 4921 cttcagtcgc actcagtgcc ctccatctgc tggaaggagt ttgcagggca ggaagatcga 4981 tcagtcaccc tcgtatacca ctccacagag ctacaagaga gaacgggttt ctacgtagca 5041 gccacgagag cgcttgaaaa cctcacccta gtgtcagacg agtttaatga gtttcacacc 5101 accccctgac tacaccaagg tttggatagc ggcagcagta ggcggatcaa ttgctttcat 5161 ttctttcata cttgtgcagg acagaacacc ccacgtggga gacaacatcc accacttgcc 5221 gcacggaggc tcctaccagg acggtaacaa acgagtgctg taccaggggc ccgctcatcg 5281 tggcgccaac aaatcctcct gggcccctgc cgcggcagtc ctcctcttat ctctggctat 5341 acttgctagt gagcttagca agcggcgccg tcgtgttcat cattgcgtca cttgcacaac 5401 ccgttaggca ttcctgcttc atcaccatca caggccacag cgtgacggtc accgggtgcg 5461 ccaaccaaga cttaccagcc ataatcaaga gcttcgagtg gagcagccat gactttcgtg 5521 accttagacc aatatcttga gcaagtcaac cgcactaacc agaaaatcca gcagatacaa 5581 gacactctcc acaacaaccc atggctgtct tctaacaacc acctggagtg gctccgggcg 5641 atccaacgtg acataatcag agcgcaagat tccatacaaa gacttgatgt cgtccgccta 5701 gacacacccc gccttgtctc catggtgact caattggtca cgagctcaca gagcattaac 5761 caacaaccgg cttctagaga cacttccgaa agggtgtttt tctcaaacct gaacaacgcc 5821 gtcgatgctg ccacaactct gctctcgaac gtccccggag gaacgtatga cgttcagtac 5881 aacccattgc cgatagagga gctctacggc ttcatcaatg ccttgcacgc caacaccatc 5941 acgtggatga agcaccttga gagtttaaca aatgcggcta ttggcaggat agacacccga 6001 ttaagctaca accgtcacag ggaagaccac cagctcatga cgaccaaagt tgacgacatc 6061 aatgaaagct tgcgccaaat ggtcacagag gtgagcagac tagccggggc gtcggctaat 6121 gaggccacca tgcagtcact catttctcag ttgcaggaac tgtctaacag cattggacag 6181 actgccccaa acgccacgct ccaagagctt gtaagactgg tgcaacaact acaacccacc 6241 aactccaaca gcagcctaat ggaggcgcac cgcaggcttc catcttatga gccccagcac 6301 cctagcttac cttgcaggac acacggcatc ctcaaatttg acgacgtagt cacaagacta 6361 ccaatggacg tgcaggggag ggcagtcagc acaaccctgg aacttcggtc caccattggc 6421 aagcgacctg atgccacaga gatcaaattt gccttgtacg acgcgggggt cttgctcgta 6481 tccagacacg tcaccactaa cagtaggctc accagcctgc ccggcgatct gctatcagtt 6541 gtccatgaac actgcccacg cttcgtgtac cgcttgaccc atagcggtct ctgttaggtt 6601 caagtctgtg tctgaaacaa taattaacac gctaactata accactaaca tggccagcaa 6661 tgcaccaagg cccgaggatt cagcccgccc catatccgga gcggttccga acacaccacc 6721 aaacaaccag agtaggccag agacttcagc gcccacccgc gacccgcttt tgcccagccg 6781 tgaagagatg cagctagtca cccgtgacgt gcaagccaac aaaatagctt cgcgccaaca 6841 ggtggaagcg atattacaac agctgcgagg gggaaacgtc aacgacctca tgtctctagt 6901 atgggcatgt ttccacaacg gctcgtccag actgacaact ttgagaggac aaagcccaag 6961 cgggctcgaa ctttcctaca taaaggacgt ggttgaggag cattgtacat tgcggcagtt 7021 ttgcaccttc tatgcaaagg tatgctacaa tactgccaaa gagctcaaaa ctcccccggc 7081 taactgggcc agcaaaggct ttaaagaaga cacccaatat gccgcattcg atttcttttc 7141 tggaaccatg agccctgcgg cgatcacccc agagggaggc atgaagtaca agcccacgcc 7201 cgacgaaatc aaggctcatt ccgccaacgc cctgatggcc atcattgatt cacgtgacca 7261 agccgaccaa tattccacca gagggaacat gctggccatg aggcaagaga gagccccccc 7321 cccccccctc atcacgttcc aataggtatt tcgagctgcc tcacagctgt tcgctgcccg 7381 acgtacgaat atcgggcctt caggatttct atggagtctt tgcctgaagt attgtagact 7441 ccaacaataa acggcaacgt cagatcacgt tgcccaatct gtagctgaaa gctaatgcct 7501 tatcttaagt aggtaatttg gacagggtcc cgagagatcc cccaaaaaaa aaaaaaaaaa 7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa //