LOCUS KX058346 7594 bp RNA linear VRL 06-DEC-2016 DEFINITION Arachis pintoi virus isolate Var B RdRp, TGBp1, TGBp2, 40 kDa protein, and CP genes, complete cds. ACCESSION KX058346 VERSION KX058346.1 KEYWORDS . SOURCE Arachis pintoi virus ORGANISM Arachis pintoi virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Alphaflexiviridae; unclassified Alphaflexiviridae. REFERENCE 1 (bases 1 to 7594) AUTHORS Gutierrez Sanchez,P.A., Jaramillo Mesa,H. and Marin Montoya,M.A. TITLE Next generation sequence analysis of the forage peanut (Arachis pintoi) virome JOURNAL Rev Fac Nac Agron Medellin 69 (2), 7881-7891 (2016) REFERENCE 2 (bases 1 to 7594) AUTHORS Gutierrez,P.A., Jaramillo,H. and Marin,M. TITLE Direct Submission JOURNAL Submitted (08-APR-2016) Biociencias, Universidad Nacional de Colombia sede Medellin, Cl. 67 #53. Laboratorio de Microbiologia Industrial 19-312, Medellin, Antioquia NA, Colombia COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7594 /mol_type="genomic RNA" /country="Colombia" /collection_date="14-Dec-2014" /host="Arachis pintoi" /db_xref="taxon:1921009" /isolate="Var B" /organism="Arachis pintoi virus" CDS 142..4320 /codon_start=1 /protein_id="APG31855.1" /translation="MATSVRKLLDQVSDPSTKAAYSELCFKHAKDAATKAQRVAPFAV TDQEALTLERLGITTSPFATTSHTHAGDKIIENDCLSLIGSYLPKTAVTMIQLKRSKI HLMNRGPNQDVFANYCHEPKDVLRYGITNPGSCPRVHTEYAVLADTLHFMSTKQLLAL FLKNPKLQKLFATLVLPIEALHRLPSLFPEIYRLEYYKEHFAYMPGGHGGGAYVHSYA TLNWLSTGQVGTHTNNVISVGYPDYLSLEKIETKAAHHVMLIQRRRTNVPWPVSPLWV FHASDYVRLPQVYYPPEANVQNTYPHDLIKRMQAYCLSVKAVSLRDIFAKLRQVIETQ DLKRYSMADLIRLANYLLLTTAMEHVSDYECLLTKGWVAKLSARIQMRVRGMLESIRG KTSYSALLSVADVIPVPFTTIPIRRPSTGLDWEVEEANQEEPREDMPGPETGPNLEDL ELVAQFEENPARNSAAEDGHGKDHSQVVDELEKALYAEKPPSSSSEDDNPPENPNGEQ SDHTAQPSESANVASLDKPTVEILKLHGFTALTPQWDGESWIQPVYFNPSNGKLPVSP LQDSNHDVAKLAHSIKRNLYQYAVDNKRAASYMSDVKNNLTGLVLPKLDRDKLSAWVS LCENAERHVSILVIHGAGGAGKSRCLQEALRNSKELAENVNVIVPTVNLVLDWKKKMN SMDPRRFMTFEKACEREAKEVAVFDDYGKLPAGYVDAYIAIKPTVEIVILTGDQRQSV YHNGNKDAQTANLTDNVTHFRKFCDYYVNATHRQPRRIANPIKVHAERQFGGAVTMAN LIQDKATVLVPAYRTQSALTDLGRQAYTYSGCQGLTISDVTIALDNDTPLCSNEVLYT AFSRASESITFVNTHSDNPDFLAKLDSTPYLKTLITGVREDEKAGHAEPPAEAAPQEP EVKTHLPVANGNVALEEKIEAVEDKDTRELWDGQEKTNLMQTQDPVIQLFPHQQAKDE PLFKLTIEKRIRTASASENQRAIIKSCNAGDLLFEAYADFMKVPKEPQNFDRDLWLHC KQLALRTYLSKPTSNLQQGATRQDPDFPEAAIALFNKSQWVKKLEKVGFKFKPGQTIS AFKQSTVLLTTTMALYLRKKREEHQPDNVFIMCEKTPDQFNDFVMTRWDFSRPSYTSD YEQYDQSQDAAFLNFELRKARHLGVPEEILSFYKFVKIHAKTFVGNLAIMRLSGEGPT FDANTECNIAYDALRFHLDNNVNACYAGDDLVRDRVCDERPSWQYTQHLFSLRAKPLA TNKPDFCGWRLTKYGIIKSPVQLYQSLQLALRLNKMDEVRRSYAIDYQYAYRLQDKLF EVFDEREMDHHQLATRLLIKKGAQVPDIGNHLPMHHVTSDRLIKNPHYREMHDAESDR IYMVAPSLTENHFT" /product="RdRp" /note="ORF1" CDS 4409..5122 /codon_start=1 /protein_id="APG31856.1" /translation="MSLTQLEDKLTAAGFTRTNQPLAYPIVVHGVPGCGKSTLIKTLI DTIGFKAATTTQPYGKTLSSCGVTSHPLEDCQRTTIRILDEYQNVAPTEWERYQVLIG DPFQGPYSSIAHYVKATSHRVPKPVANFLRARDFDIHSDKEGSLTTTSPYSPKVARQF QNTTVLHLGPISKQLLQSHSVSSTCWKEFAGQEDQSVVLVYHSTELQDRTGFYVAATR ALKDLTLVSDEFDEFHTTS" /product="TGBp1" /note="ORF2" CDS 5100..5420 /codon_start=1 /protein_id="APG31857.1" /translation="MSFTPPPDYTKVWIAAAVGGSIALISLIAVQDRTPHVGDNIHHL PHGGSYQDGNKRVLYQGPSHRGANKPSWAPAAAVLLLSVAILVSEFSKRRRRVHRCVT CTAH" /product="TGBp2" /note="ORF3" CDS 5522..6610 /codon_start=1 /protein_id="APG31858.1" /translation="MTFVTLDQYLEQVNRTNQRIQQIQDTLNNNPWLNSNNLLEWLRA IQRDTLKVQDSIQRLDVVRLDTPRLVSMVSQLIANSQAINQQPPTRTTSDRVFFSNLS TAVGAATTLLSNVPGETYDVQYTPLPIEELYGFINALHANTITWMKHLESLTNAAIGR IDSRLSYNRYREDHHTMTTKVDDINESLRQMVTEVSRLAGASANETTMQSLISQLQTL SNSIGQTAPNATLQELVRLVQQLQPTNSNSSLIEAHRRLPPYVAQHPSSPCRTHGILK FDDVVTRLPMDVQERALSTTLELRSTIGKRPDATEIKFALYDAGVLLVSRHITINSRL TSLPGDLLSVVHEHCPRFVYRLTHSGLC" /product="40 kDa protein" /note="ORF4" CDS 6663..7361 /codon_start=1 /protein_id="APG31859.1" /translation="MASNAPRPEDSSHLTSGAVPNAPPHNKSRPETSAPTRDPLLPSR EEMQLVTRDVRANKIASRQQVEAILQQLRGGNVNDLMALVWACFHNGSSRLTTLRGQS PSGLELSYIKDVVEEHCTLRQFCTFYAKVCYNTAKELKTPPANWASKGFKEDTQYAAF DFFSGTMSPAAITPEGGMKYKPTPDEIKAHSANALMAIIDSRDQADQYSTRGNMLAMR QERAPPPPPLITFQ" /product="CP" /note="ORF5" ORIGIN 1 ctaaactgta cattcagtga taaagaaacc tagcgaggct tcgaaaacta aacattccga 61 gacagcacga aacaacacag cactaaactg tacattcagt gataaagaaa cctagcgagg 121 ccttgaacac tgtttgttag tatggctacc agcgtgcgca aactcctaga ccaagtgtcc 181 gacccctcca ccaaagcagc ctactccgaa ctctgcttta agcacgccaa agatgccgcg 241 acaaaagccc agcgagtggc tccattcgcg gtgactgatc aggaagcttt aacgctagag 301 agattaggca ttaccacctc ccctttcgcc accacttcac acacccatgc aggtgataaa 361 attatagaaa atgactgcct gtctttgata gggtcatacc tacccaaaac tgcagtcacc 421 atgatccaat taaaacggag caaaattcac ctgatgaaca ggggacccaa ccaggatgtc 481 tttgctaact actgccatga acccaaagat gtgttgcgtt acggcataac caaccccggt 541 tcatgccccc gcgtacacac tgaatacgca gttttggcag acactcttca cttcatgtca 601 acaaaacagt tgttggcttt attccttaag aatccaaagt tgcaaaaact atttgcaaca 661 ctcgtgctac caattgaggc cctccatcgc ctaccatctt tgttcccaga gatataccgc 721 ttagagtatt acaaggaaca ttttgcctac atgcccggtg ggcacggtgg aggggcctac 781 gttcactcct acgcgactct caactggcta tccactggcc aagttggaac gcacactaac 841 aatgtgatat ccgtgggata ccccgactac ctctccctag aaaaaatcga aactaaggca 901 gcacaccatg tgatgctgat ccaaaggaga cgtaccaatg ttccatggcc agtttcccct 961 ctgtgggtgt tccacgcctc tgactatgtg cgtctaccac aggtgtacta cccccccgag 1021 gccaatgtcc agaacactta ccctcatgac ttgatcaaga gaatgcaagc ctattgctta 1081 tcagtcaaag ctgtctcact cagggacatc tttgccaaac tacgacaagt cattgagact 1141 caggatctta aacggtactc catggccgat ttgatacgac tagccaatta tcttctgctg 1201 accaccgcca tggagcatgt ttccgactat gaatgtctcc tcactaaggg ttgggtagcc 1261 aaactgagcg cccggattca aatgcgagtg cgcggcatgc ttgaaagcat cagaggtaaa 1321 acctcttact cagctcttct ctcggtagct gatgtaatac cagttccttt caccaccata 1381 cctatcagac gcccgtccac gggtttagat tgggaagtgg aggaagctaa ccaagaggaa 1441 ccaagagaag acatgcctgg cccggaaacc ggcccaaacc tggaagacct ggagttagtt 1501 gcgcaattcg aagaaaaccc ggccagaaac agcgccgccg aggatggcca cggaaaagat 1561 catagccagg ttgtagacga gctcgagaaa gccctgtacg cagagaaacc tcctagctca 1621 agctctgaag atgacaatcc cccagaaaat ccaaatggag aacaaagcga ccatacggca 1681 caaccatcag aatccgcaaa cgttgccagc ctcgacaagc ccacagtgga aattctcaaa 1741 ctacacgggt tcacagccct cacgccccaa tgggatggcg agagttggat ccaacctgtg 1801 tacttcaacc ccagcaatgg caagcttccc gtcagtccgc tgcaagactc caaccatgac 1861 gtcgcaaaat tagcccactc aatcaaaaga aacttgtacc aatacgctgt ggacaataag 1921 cgggcagcct cttacatgtc cgacgtcaag aacaatctca cgggacttgt gctaccaaag 1981 ttggacaggg acaaactctc cgcatgggta agcctttgtg agaatgccga gcgccacgtc 2041 tccattctgg tcatccacgg agcgggcgga gccgggaaaa gtcgctgcct ccaagaagca 2101 ctgcgaaaca gcaaggagtt agcagaaaat gtgaacgtca tagtccccac agtcaacctg 2161 gtactggact ggaaaaagaa aatgaactct atggatccca ggcgattcat gacctttgag 2221 aaagcttgcg aaagggaagc caaggaggtg gctgtttttg acgactatgg caagctgcca 2281 gccggatacg tggatgccta cattgcgatc aagcccacag tcgaaattgt catattgaca 2341 ggtgaccaga gacagtcagt ctaccataat ggtaacaagg acgcgcagac tgccaacttg 2401 actgacaacg tcacgcactt caggaagttc tgtgactact acgtcaacgc cacccatagg 2461 cagcccagaa gaatcgccaa ccccatcaaa gtgcatgccg agagacaatt tgggggagcc 2521 gtcacaatgg ccaacttgat acaagacaag gcaactgtct tggtaccagc gtacaggacg 2581 caaagcgccc ttacagacct tggtcgccaa gcctacacct attcaggctg tcagggttta 2641 acaatcagtg acgtcaccat agccctagac aacgacaccc ccctctgctc aaacgaagtg 2701 ttgtacactg ccttttccag agcgtctgag agcatcacct tcgtcaacac ccactcagac 2761 aaccccgatt ttctggctaa gctagacagc accccttacc tcaaaactct cattacaggg 2821 gttcgtgagg acgagaaagc tggccatgca gagcccccgg cggaagctgc acctcaggag 2881 ccagaggtca aaacccacct gccagtagcg aacggaaatg ttgctctcga agaaaaaata 2941 gaggcagtgg aagacaagga cacgagagaa ctgtgggacg gacaagagaa aactaatctc 3001 atgcagaccc aggaccccgt catacagctg tttcctcatc aacaagccaa ggacgaacca 3061 ttgttcaagt tgacaattga gaagaggatc cggacagcgt cagcgagtga gaaccagaga 3121 gccatcatca agagctgcaa tgcaggagac ttgctgttcg aagcgtatgc tgattttatg 3181 aaagtgccca aggagccaca gaattttgac cgggatttgt ggctgcactg caaacagttg 3241 gcactgagga cctacttgag caaacccaca agcaacttgc aacaaggggc gactcgtcaa 3301 gacccagact tcccagaggc ggccattgcc ttgttcaaca aatcacaatg ggtcaagaag 3361 cttgagaagg tcggattcaa gttcaagcct ggacagacca tttcggcctt caaacaatca 3421 acagttttgc tgaccaccac catggcattg tatctcagga agaaaaggga ggagcatcag 3481 ccagataacg tgttcatcat gtgcgagaag accccagatc aattcaacga ttttgtaatg 3541 accaggtggg acttttcacg accctcttac acgtctgact acgagcagta tgaccaatcg 3601 caagacgctg cattccttaa ttttgaactg cgaaaagcca gacacctcgg agtcccagaa 3661 gagattctca gtttctacaa gttcgttaaa attcatgcca agacgttcgt cggcaaccta 3721 gccataatga gactcagtgg cgaggggccc accttcgacg ccaacaccga atgcaacata 3781 gcgtacgacg ctttgaggtt ccaccttgac aataacgtca acgcatgtta tgccggcgac 3841 gacctcgtga gggacagggt ttgcgacgaa cgacccagtt ggcagtacac tcagcacctc 3901 ttctctctca gagccaaacc ccttgctaca aacaaacccg atttctgcgg atggaggcta 3961 accaagtatg gcatcatcaa atccccagtc cagctgtatc agtcattgca gttggccctc 4021 aggctaaaca agatggatga ggtcaggcgc agttacgcca ttgattacca gtatgcatac 4081 cggttgcaag acaaattgtt tgaggttttc gatgagcgtg agatggacca ccaccagctg 4141 gctaccagat tgctaattaa gaaaggcgct caagtcccag acattggaaa ccacttgcct 4201 atgcaccatg tcacctcaga cagactcatc aaaaacccac actacagaga gatgcatgat 4261 gctgagagcg acagaatcta catggttgcc ccatctttga cagaaaacca cttcacctaa 4321 cccttcaact aacactctga ccactaaccc ttaggactgc tttatgttta aggcttatta 4381 tgaataacta acgtagccct caccaccgat gagtctaaca cagcttgaag acaagttgac 4441 cgcggcaggc ttcaccagaa ccaaccaacc tttggcttac ccaattgtcg tacacggtgt 4501 tccaggctgt ggcaaaagta ccctcattaa gacactcatt gacaccatag ggttcaaagc 4561 cgccacaaca acgcaaccgt acggcaagac cttgtccagt tgcggagtca catcacatcc 4621 actagaggac tgccagagaa ccaccattcg gatcctggac gaataccaga acgttgcccc 4681 aaccgagtgg gagagatatc aagtcctgat tggcgacccc ttccaaggcc cctattcctc 4741 cattgcccac tacgtgaagg ccacttcgca ccgggtgccc aagccggttg cgaactttct 4801 gcgagccagg gactttgaca tccacagcga caaggagggc agtctcacca ccactagccc 4861 ctactcacct aaagtagccc gacagttcca aaacaccacg gttctgcatc ttggacccat 4921 ttcgaagcag ctgcttcaat cacattcagt gtcctccacc tgctggaagg agttcgctgg 4981 gcaagaagac caatcggttg tcctcgtgta ccactccaca gagcttcaag accgaacagg 5041 cttctacgtg gcagctacaa gagcactcaa agacctcacc ctagtgtcag acgagtttga 5101 tgagtttcac accacctcct gactacacca aagtttggat agcggcagcc gtgggtggat 5161 caatcgctct catctccctc atagctgtgc aggacagaac gccccacgtg ggagacaaca 5221 ttcatcacct gccacacgga ggctcctatc aggacggtaa caaacgagtg ttgtaccagg 5281 gtcccagcca ccgtggcgcc aacaagccct cctgggctcc agccgcagca gtcctgctcc 5341 tatctgtggc tatacttgtt agtgagttta gcaagcgccg ccgtcgtgtt caccgctgcg 5401 tcacttgcac agcccactag acattcttgc ctcatcacca tcacagggca cagcgtgacg 5461 gtcacagggt gcgctaacca agatctacca gctattatta ggagttttga gtggagcagc 5521 tatgaccttc gtaactctag accaatatct tgagcaggtt aaccgcacca atcaaagaat 5581 tcagcagata caagacactc tcaacaacaa cccatggctg aattccaaca acctcctaga 5641 atggctcaga gcaatccagc gtgacacact taaggtgcag gactccatac agagactcga 5701 cgtcgtccga ctggacacac ctcgccttgt ctccatggta agccaactga tcgcgaattc 5761 acaagccatc aaccaacaac cacccacgag gaccacttca gatagggtat tcttctcaaa 5821 cttgagcacc gctgttggcg ccgccacaac cctactctcg aacgtcccgg gagagacgta 5881 tgacgtccaa tacactcctt tgccaataga ggagctctat ggcttcatca acgccctaca 5941 tgccaacacc atcacttgga tgaagcacct tgagagctta acgaacgcag ccattggcag 6001 aatagactcc cggctaagct acaatcggta cagggaagac caccatacca tgacgaccaa 6061 ggtagacgac atcaacgaaa gcctgcgtca gatggttaca gaggtgagca gactggcggg 6121 agcgtcggcc aatgagacca ccatgcagtc tctcatttca caactgcaga cgttatccaa 6181 cagcataggg caaactgctc caaacgccac acttcaagag cttgtgagat tggtacaaca 6241 actgcaaccc accaactcca acagcagcct gatagaggcg caccgcaggc tcccacccta 6301 cgtggctcaa catcccagct cgccctgcag aacgcacggc attctaaaat ttgatgacgt 6361 ggtcacaaga ctaccaatgg acgtgcagga aagggcactc agcacaactt tggaactccg 6421 gtccaccata ggcaagcgac ccgacgctac ggaaatcaaa ttcgccttgt acgacgcggg 6481 agttttgctt gtgtctagac acatcaccat caacagccgg ctcaccagct tgcccggcga 6541 tttgttatca gtagttcacg aacactgccc acgttttgtg taccgcttga cccatagcgg 6601 tctctgttag gttcaagttc gtgtctgaaa taacaactaa cgcactaact gtaattacta 6661 acatggccag taacgcacca agacccgaag attcaagcca cctcacgtct ggcgcagttc 6721 caaacgcacc gccacacaac aagagtagac cagaaacttc agcaccaacg cgcgacccgc 6781 ttctgcccag ccgtgaagag atgcaactgg tcactcgcga cgtgcgagct aacaaaatag 6841 cttcgcgcca gcaggtggaa gcgatactgc agcagctacg gggagggaat gttaacgacc 6901 tcatggccct agtgtgggcg tgtttccaca acggctcgtc tagactaaca actctgagag 6961 gacaaagccc gagtgggctc gaactctctt acataaagga cgtggttgag gaacattgca 7021 cactgcggca gttctgcact ttctacgcga aagtgtgtta caacactgcc aaggagctca 7081 aaaccccacc agccaactgg gccagcaaag gtttcaagga ggacacccag tatgctgcat 7141 tcgatttctt ttccggaact atgagccccg cggcaatcac cccggaggga ggcatgaagt 7201 acaaacccac gccagacgaa atcaaggctc actccgcgaa tgccttgatg gccatcattg 7261 attcccgtga ccaggccgac cagtactcca ctagagggaa catgttagcc atgagacaag 7321 agagagcccc cccccccccc cccctcatca ctttccagta ggtatttcga gctgccttac 7381 agctgttcgc tgcccgacgt acgaatatcg ggccttcggg atttctatgg agtctttgcc 7441 cgaagtattg tagactccca caatgacagc aacgtcaact tgcgttgccc aacctgtagc 7501 agtgaagcta atgccttatc ttaagtaggt aatttggaca gggtcccgag acgaccccca 7561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa //