LOCUS NC_015523 6175 bp RNA linear VRL 24-JAN-2013 DEFINITION Asclepias asymptomatic virus, complete genome. ACCESSION NC_015523 VERSION NC_015523.1 DBLINK Project:66899 KEYWORDS RefSeq. SOURCE Asclepias asymptomatic virus ORGANISM Asclepias asymptomatic virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Tymoviridae; Tymovirus; unclassified Tymovirus. REFERENCE 1 (bases 1 to 6175) AUTHORS Min,B.E., Feldman,T.S., Ali,A., Wiley,G., Muthukumar,V., Roe,B.A., Roossinck,M., Melcher,U., Palmer,M.W. and Nelson,R.S. TITLE Molecular characterization, ecology, and epidemiology of a novel Tymovirus in Asclepias viridis from Oklahoma JOURNAL Phytopathology 102 (2), 166-176 (2012) PUBMED 22026416 REFERENCE 2 (bases 1 to 6175) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (03-JUL-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6175) AUTHORS Min,B.-E. and Nelson,R.S. TITLE Direct Submission JOURNAL Submitted (21-OCT-2010) Plant Biology, The Samuel Roberts Noble Foundation, 2510 Sam Noble Pkwy, Ardmore, OK 73401-2124, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to HQ425778. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6175 /mol_type="genomic RNA" /db_xref="taxon:1027880" /country="USA" /organism="Asclepias asymptomatic virus" /collection_date="2007" /host="Asclepias viridis" 5'UTR 1..72 gene 73..1974 /locus_tag="AsAV_gp1" /db_xref="GeneID:10913670" CDS 73..1974 /locus_tag="AsAV_gp1" /function="involved in movement" /protein_id="YP_004464923.1" /note="overlapping protein" /db_xref="GeneID:10913670" /codon_start=1 /product="movement protein" /translation="MSNGFSARSRRSLPNLPQGLVPSPCAGLRNGAHAQLSHHLSLDG PQRPPALSSPSRNSNFRIGHYPSPSSRAQSARNQSSLQPLALPCQNSILGAFHEAREI QQAPKEKSKLLRAPELPSDPKRLGPLPNHLPSPPKNRRRLHARRSHVLHSRTSSGCLP PHSKSAETFLQFGSAPRVRVHEPLTLTKSLHLPTSQPDPSLHPGKPLRRVLQPAPIGH SMAKNLFHPPPPDSTFCHNPGILGPPPLNPHTKRPAQPTFGRSQPLFIPSPPPPLPCS RPNLIQNSRVHRAASIHLPLPTPSSPAHPKESLRRPLHLHKSGSNPPNLRPRRLRSNP VEQTRILLGDFKRLGQPSNLRAPELRHPTKCGLQLSPQPLPKTQNLSKPTLAPHRSGL RSHPILPNPPSSLPKLVFISPKGKVHFSLPPPLRPAPPSTSSPPNFPQASQPSTPPSS PDSFKSLPNLTSALTPPPTPTRNSPEFPHLSFRLSHQVPNLALPPRLLGAGTSSSRLK AHRRSVRATAARPLPPPSPPSPIPPPVGKTSLLDDFEAKLSALRARRHSISSSSSPRS TPPQIPEHQPPALHFSQLELNPTFPPPQPPSHPTLFPPPRLHQHPSLPLHHLSTTHHQ LPHQLLPKN" gene 80..5506 /locus_tag="AsAV_gp2" /db_xref="GeneID:10913668" CDS 80..5506 /locus_tag="AsAV_gp2" /db_xref="GeneID:10913668" /codon_start=1 /protein_id="YP_004464924.1" /translation="MAFQLALDALSQTSHRDSSLHPVLDSVMEPMRNSLTTFPWMVPN DLQPFLLQAGIQTSGLGTTPHPHPVHKVLETNLLFNHWHFLAKTPSSVLFMKPEKFNK LQKRNPNFSELLNYRVTPNDSVRYPTTSPHLPKTDVVFMHDALMYYTPEQVLDVFLRI PNLQKLFCSLVVPPESEFTNLSLSPNLYTFQLHNQTLHYIPENHYAGSYNQPLSAIQW LKISSIHHPQIQLSVTILESWGPLHSILIQRGLPSQHLAGPNLFSSLLHPLPSPAADL ISFKIPECIELPQSTFLSQPLRHRLIPKKAYDALFTYTRAVRTLRTSDPAGFVRTQSN KPEYSWVTSNAWDNLQTFALLNCAIRPNVVYNFLRNPFQKLKIYLSQHWRRIVAVSAP TLSFLTLLPHFLNWSLSLPKVKCISAFRHRFDQPPPQPLALQIFHKLVNHLPPQVLQT LSKVCQTLHLPSPLPPPRPGILPSFRISHSAYPIRFPTWLSLLACLVPELLVLGSKLT GDLSVQQQHDLYHHHLHPAQYHLQWERLPYSTTSRQNFLPFEPVATPSPPQAPLAQPP PKSRSTSPQHFTSPSWSSTQLSPHLSPLPTQPSSPPPDFINIPVSPSTTFRQPTTSFL TNSSPRTRSLYEYLLQYYHPGPPPLPQPASNGCHCEPCTQSEASSPTQNFPLQDPSSP YIVPPDPSTPIPEPPLLKDLSCTGPILSFQDLYPRNYYPNTALFLTRLRITPPKPLPL PPNDCLLQAISPSLSVSPSRLWLALQEIIPDCLLDNEEVHRLGLSTDLLTALCHYFNF KAEVISDGTSLHYGISDSPVQIQIIHTSGSPGHYSPPPKLTGATPPREPPHPLTEQLL RFKFKGAHLPFSKVHSYSSSVAHAKNLVSNMKNGFDGILSLVESNVKHAPGCSPRDKI IMLDRLLDNAAPRSVHLIHIAGFAGCGKTHPLQHLLRTKPFHNFRVSVPTTDLRNEWK KDMALPSSQSHRFNTWESSLFKHSNILVIDEIYKLPRGYLDLSIHSDPSISLIILLGD PLQGEYHSTSPHSSNHLLQSETERLSQFIDHYCWWTYRVPSHISDLFNVPSYNQSHGP FFGTVRLASSYSPGQHNLVNSMATSAAVNQLGYPSCTISSSQGMTFRKHVTILLDKHS RLLSPSNTLVALTRSTAGVEFLGDPMSLSGTNNSSDMFSRAMHQMPINLATCFPRIFH KLNLLREPIKHRSKRLLGSRPPSPIYLNPKKMHLPPHIPIDYALDYVLHNPHVFGSKD DPRLECNFLPPTRLALHSDLISANPSVPSLQPVDSDFRTPITPVYPGETFENLAAFFL PAHDPELKEILYKDQNSQQFPWFDRPFELSCQPSSLIAARHSPSQDPTLLPSSIKKRL RFRPSDNPHQFSADEIILGNHLFHSLCRAYNRNPNQTLPFNPSLFAECIALNDYAQLS SKTKSTIVANASRSDPDWRHTAVKIFAKSQHKVNDGSIFGPWKACQTLALMHDFVILS LGPVKKYQRLFDQADRPSHLYTHCGKTPQDLSLWCSAHLSHKTKVTNDYTAFDQSQHG ESVILEALKMKRLSIPEHLILLHIHLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNIA VLYSQYNLQNTPVMVSGDDSLIDSKCPELLSWPTIQSKLHLRFKTETTDYPLFCGYYV GSSGAIRNPLALFAKLMIAIDDQSISEKRLSYITEFSVGHSLGDSFWDLLPSEIHPYQ SACFDYFCRNSPPHEKSILHNLPFSPTALSTITSSIKWLSKSAFSALPMRIRRAAIEK SQLPSSHENPEVSRLESELLHNFQ" /product="replicase" gene 5510..6076 /locus_tag="AsAV_gp3" /db_xref="GeneID:10913669" CDS 5510..6076 /locus_tag="AsAV_gp3" /db_xref="GeneID:10913669" /codon_start=1 /protein_id="YP_004464925.1" /translation="METERVLVTQPAISTQTDLLSIPSSPNPPTITQPFQIEIAALGK ESYSDSISVAALSSIAAYTSLYKHAELHSLSATIHPTNSAPSNPTAVALAWVPYNSAA SPTQILSVYGGMMFCIGGSIQTLKPIEVLCDLSKVNPILKSNVTFSDTPKLLIQSVAP DPPSKLPTCSITIKGMIRLHSPLLQASA" /product="coat protein" 3'UTR 6077..6175 ORIGIN 1 ggtaatcttt accgaacagt cctctgatca cagacagctg ttctttaatt taattgtcaa 61 atacgtctgc caatgagcaa tggcttttca gctcgctcta gacgctctct cccaaacctc 121 ccacagggac tcgtcccttc accctgtgct ggactccgta atggagccca tgcgcaactc 181 tctcaccacc tttccctgga tggtccccaa cgacctccag ccctttcttc tccaagccgg 241 aattcaaact tccggattgg gcactacccc tcaccctcat cccgtgcaca aagtgctaga 301 aaccaatctt ctcttcaacc actggcactt ccttgccaaa actccatcct cggtgctttt 361 catgaagccc gagaaattca acaagctcca aaagagaaat ccaaacttct ccgagctcct 421 gaactaccga gtgaccccaa acgactcggt ccgctaccca accacctccc ctcacctccc 481 aaaaacagac gtcgtcttca tgcacgacgc tctcatgtac tacactccag aacaagttct 541 ggatgtcttc ctccgcattc caaatctgca gaaacttttc tgcagtttgg tagtgccccc 601 agagtcagag ttcacgaacc tctcactctc accaaatctc tacaccttcc aacttcacaa 661 ccagaccctt cactacatcc cggaaaacca ctacgccggg tcttacaacc agcccctatc 721 ggccattcaa tggctaaaaa tctcttccat ccaccacccc cagattcaac tttctgtcac 781 aatcctggaa tcctggggcc ccctccactc aatcctcata caaagaggcc tgcccagcca 841 acatttggcc ggtcccaacc tcttttcatc ccttctccac cccctcccct cccctgcagc 901 cgacctaatc tcattcaaaa ttcccgagtg catcgagctg cctcaatcca ccttcctctc 961 ccaacccctt cgtcaccggc tcatcccaaa gaaagcctac gacgccctct tcacctacac 1021 aagagcggtt cgaaccctcc gaacctccga ccccgccggc ttcgttcgaa cccagtcgaa 1081 caaaccagaa tactcctggg tgacttcaaa cgcctgggac aaccttcaaa ccttcgcgct 1141 cctgaactgc gccatccgac caaatgtggt ctacaacttt ctccgcaacc ccttccaaaa 1201 actcaaaatt tatctaagcc aacactggcg ccgcatcgta gcggtctccg ctcccaccct 1261 atccttccta accctccttc ctcacttcct aaactggtct ttatctctcc caaaggtaaa 1321 gtgcatttca gccttccgcc accgcttcga ccagcccccc cctcaacctc tagccctcca 1381 aattttccac aagctagtca accatctacc cccccaagtt ctccagactc tttcaaaagt 1441 ctgccaaacc ttacatctgc cctcacccct ccccccaccc cgacccggaa ttctcccgag 1501 tttccgcatc tctcattccg cctatcccat caggttccca acctggctct ccctcctcgc 1561 ctgcttggtg ccggaacttc tagttctagg ctcaaagctc accggcgatc tgtccgtgca 1621 acagcagcac gacctctacc accaccatct ccacccagcc caataccacc tccagtggga 1681 aagacttccc tactcgacga cttcgaggca aaactttctg cccttcgagc ccgtcgccac 1741 tccatctcct cctcaagctc ccctcgctca accccccccc aaatcccgga gcaccagccc 1801 ccagcacttc acttctccca gctggagctc aacccaactt tccccccacc tcagccccct 1861 tcccacccaa ccctcttccc ccccccccga cttcatcaac atcccagtct ccccctccac 1921 cacctttcga caacccacca ccagcttcct caccaactcc tccccaagaa ctaggagcct 1981 ctatgaatat ttgctccagt actaccaccc cggccccccc ccccttcccc aacccgcatc 2041 taacggatgc cactgcgagc cctgcaccca aagtgaagca tccagcccca cccaaaactt 2101 tcccctccaa gacccctcct ccccctacat tgttccaccc gacccttcaa ccccaattcc 2161 agagccccct ctactgaaag atctgtcttg cactggaccg atcctcagct tccaagacct 2221 ctacccccgc aactactacc caaacaccgc gctgttcctc accagactcc gcatcacccc 2281 cccaaaacca ctccccctcc caccgaatga ctgcttgctc caagcaatct ctccttcttt 2341 gtcagtcagt ccatccagac tttggcttgc tctccaggaa attattcccg actgcttgct 2401 tgacaatgaa gaagtccatc gcttgggctt gtccaccgac ctcctgaccg ctctctgcca 2461 ctacttcaac ttcaaagccg aggtaatttc tgacgggacc tctctgcact acggaatctc 2521 cgattctccc gtccaaatcc aaataataca tacctctggc tctcctggcc actacagccc 2581 tcccccaaaa ctcactggcg ccactccacc aagagaaccg ccccaccctc ttactgaaca 2641 gctcctccgc ttcaaattca aaggagctca tcttccattc tccaaagtcc attcttactc 2701 tagctccgtt gcccatgcta aaaacctagt gagcaacatg aaaaatggct ttgatggaat 2761 tctctctctt gtcgagagca atgttaagca tgctcctggc tgttctccca gagataaaat 2821 aataatgctg gaccgtctcc ttgataatgc cgcacctcgc tcagttcatt taatccacat 2881 agccgggttc gccggctgtg gcaagaccca tcccctccag cacctcctca gaactaaacc 2941 cttccataac ttccgagtct ctgttcccac caccgacctt cggaacgaat ggaagaaaga 3001 catggctctt ccttcaagtc agtctcatcg cttcaacacc tgggaatcct ccctcttcaa 3061 acattccaat atcctcgtca ttgatgaaat ctacaaactc ccccgaggtt atttggatct 3121 ctccatacat tccgaccctt ccatttctct catcatcctc cttggagacc ctctccaggg 3181 agagtatcat tccacttccc cccactcttc caatcacctt cttcaatcag aaactgagag 3241 actctcgcaa ttcatcgacc actattgttg gtggacgtac agagtcccat cccacatttc 3301 tgatcttttt aacgtccctt cctacaacca atcccacgga cctttctttg gaactgtccg 3361 actggcctca tcctactccc caggacaaca caacctggtc aacagcatgg caacttcagc 3421 cgctgtcaat caactaggct atccttcctg caccatcagc tccagtcaag gaatgacttt 3481 ccgcaaacat gtaacaatcc tccttgacaa acactcccga ctcctttccc caagtaacac 3541 actggtagcc ctcacaagat ccaccgctgg cgtggaattc cttggagacc ccatgtctct 3601 atccggcacc aacaactctt ctgacatgtt ctccagagcg atgcatcaaa tgccaatcaa 3661 tttggcaacc tgtttcccga gaatcttcca caagctcaac cttcttcggg aaccaatcaa 3721 acatcgatcc aagagactcc ttggatctcg acccccctcc ccaatttacc tcaaccccaa 3781 gaaaatgcac cttccccctc acattccaat cgattatgca ctcgattacg tgttgcacaa 3841 ccctcacgtc tttggctcca aagatgaccc tcgactggaa tgcaactttc ttccccccac 3901 tcgactcgcc ctacactccg acttaatctc cgccaatccc tcagtcccaa gcctccagcc 3961 tgttgactcc gatttccgca caccaatcac ccccgtttat cccggcgaga ccttcgaaaa 4021 tctcgcggcc ttcttcctcc ctgcccatga tcctgagctt aaagaaatac tctacaagga 4081 tcaaaacagt caacagtttc cctggtttga ccgccctttc gagctatctt gccagccctc 4141 ctctcttata gccgcccgac acagtccttc acaagacccg accctcctcc cctcctctat 4201 taagaaaaga ttgaggtttc gcccatcaga caacccccac caattctccg ccgatgaaat 4261 aatactgggg aatcatctgt tccactcact atgccgagcc tacaatcgaa acccaaacca 4321 aactctcccc ttcaatcctt ccctcttcgc tgaatgcata gctctcaacg actacgctca 4381 gctctcctcc aaaaccaaat ccaccatcgt cgccaatgct tcccggtctg acccagattg 4441 gagacatact gccgtcaaga tattcgccaa atcccaacac aaagtcaacg acggctcgat 4501 cttcggtcct tggaaagcct gtcaaacttt agcccttatg catgactttg tcattctcag 4561 cttggggcct gtgaaaaaat accaacgact tttcgaccaa gctgaccgac cctcacacct 4621 ctacactcac tgcggcaaaa ccccgcagga tctttctctg tggtgttcag cccatctctc 4681 ccacaaaacc aaagtcacca atgactacac cgctttcgac caatcccaac acggagaatc 4741 cgtcattctc gaagctctga aaatgaagcg cctctccatc cctgagcacc taatcctcct 4801 tcacatccac ctgaagacca acgtctccac ccaattcgga cccctcacct gcatgcgcct 4861 tactggagag cccggcactt acgacgacaa cactgactat aacattgccg tgctctactc 4921 tcaatacaac ctgcaaaaca cccctgtcat ggtctctgga gacgattcgc tcatcgactc 4981 caaatgcccc gaactcctct cctggcccac aatccaatcc aaactgcatc tccgcttcaa 5041 gaccgaaacc actgactatc ccctgttctg cggctactac gtcggctcat ccggagccat 5101 ccgcaacccc ctcgctctgt tcgctaagct aatgatcgct atagacgacc agtctatcag 5161 cgagaagagg cttagttaca taactgaatt ctcagtcgga cattcacttg gtgactcttt 5221 ctgggatctc ctccccagcg agattcatcc gtaccaaagt gcctgtttcg actatttctg 5281 cagaaactcc cccccccatg aaaaatccat actgcacaac ctccccttca gccccacagc 5341 tctctccact atcaccagct ccattaaatg gctctccaaa tctgctttct ccgctctgcc 5401 catgcgaatc cgccgagcag ccatagagaa gtctcaatta ccctcttccc acgagaaccc 5461 agaagtttcc cgtctagagt ctgaattgct tcacaatttt caatagacaa tggaaactga 5521 acgagtcctc gtcacccaac ccgccatttc cactcaaacc gaccttttgt ccatcccttc 5581 ttctcccaac ccacccacta tcacccagcc tttccaaatc gagatcgccg cactaggcaa 5641 agagtcttat tcagactcca tcagcgtggc cgctctctcc tccatcgctg cctacaccag 5701 cctctacaaa catgccgagc tccattcgct ctcggcaact atccacccta ccaattcagc 5761 cccctccaac ccgaccgccg tcgccctcgc ttgggtaccc tacaactccg ccgcttcacc 5821 cactcagatt ctgagtgtgt atggcggcat gatgttttgc atcggcggct ccatccaaac 5881 tcttaagcct atcgaggttc tctgtgatct ctccaaggtc aatccgatcc tcaaaagcaa 5941 cgtcaccttc tctgacactc ccaaattact catccagtca gtagctcctg accccccctc 6001 caaactccca acttgctcta tcaccatcaa aggcatgatc cgccttcact ctcctctcct 6061 ccaagcttcg gcctgagctc tcaaggtcac agctcgcgag tgcgaggcct gctaccctca 6121 cacagcaggt attggggtgc gactcccccg tctattccgg acgtcaccgg aacca //