LOCUS NC_003400 6985 bp RNA linear VRL 06-OCT-2014 DEFINITION Scallion virus X, complete genome. ACCESSION NC_003400 VERSION NC_003400.1 DBSOURCE BioProject accession PRJNA15099 KEYWORDS RefSeq; coat protein; complete genome; RNA polymerase; triple gene; block protein 1; triple gene block protein 2; triple gene block; protein 3. SOURCE Asparagus virus 3 ORGANISM Asparagus virus 3 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Alphaflexiviridae; Potexvirus. REFERENCE 1 AUTHORS Che,J., Zheng,H.Y., Chen,J.P. and Adams,M.J. TITLE Characterisation of a potyvirus and a potexvirus from Chinese scallion JOURNAL Arch. Virol. 147 (4), 683-693 (2002) PUBMED 12038680 REFERENCE 2 (bases 1 to 6985) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-FEB-2002) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6985) AUTHORS Adams,M.J. TITLE Direct Submission JOURNAL Submitted (24-AUG-2001) Adams M.J., Plant Pathogen Interactions Division, IACR-Rothamsted, Harpenden, Herts AL5 2JQ, UNITED KINGDOM COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AJ316085. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6985 /mol_type="genomic RNA" /db_xref="taxon:445435" /country="China:Zhejiang: Hangzhou" /organism="Asparagus virus 3" /host="Allium chinense" 5'UTR 1..81 gene 82..4977 /locus_tag="SvXgp1" /db_xref="GeneID:20531195" CDS 82..4977 /locus_tag="SvXgp1" /db_xref="GOA:Q8QXK9" /db_xref="InterPro:IPR000606" /db_xref="InterPro:IPR001788" /db_xref="InterPro:IPR002588" /db_xref="InterPro:IPR007094" /db_xref="UniProtKB/TrEMBL:Q8QXK9" /db_xref="GeneID:20531195" /codon_start=1 /protein_id="NP_570726.1" /translation="MARVRASLEKIRDPSVQTAISEAAYAHVRPVLKEALVNCPYALN DAEADCLENFGITVNPYATQTHTHAACKAIENRMLEIVGKHLPKERCTMLFLKRSKLR YLRRAAALKDDFINQDIEPKDLFRYDRDTIRTRLKDITTPIAYMSDTLHFMSHTELML LFADSPPLQTMLATLVLPIEAMHRRTTLYPALYSINYGPKGFEYIPGNHGGGAYFHPY DTLDWLKVRQLRGEDHHGIDPTITLTFQLVESLGANHLFIIQRGDLRTPLVRTFCRDT LVTMPKIFCPDSMNANRPLTKTKAMQMLMYCKSVKQVSERDIYAKFRQMISTPELELY EPDEMVHLCNYFHFVAHLDSITCYDDLLGNSLWATPHHPRTHQSHPILDFFRGQNNFS KLLAALKWEPFSYSLEPNDFTVSYDGHSARALADRTGLSLTVAAATIKDSRADPTLFT EADLEDTPFEDFLGRLTYPIPTNQEGSPRDTEPESPSISGATQVFHFNTSAQALTSSP ESPQAQEWPEVHHSSWLAATFHHMLGELPFAQTVGRRTYLFASPPVLFSDPDLTHHTN LAWQPILSDVVDSLGISATACFIQVYDEGLNQPWRCNYGRKPESDVISTLTLGQAELE LAGGKRLSLKEGDWFTINGPLLQRGHHISVGSPQCITLTFWLHMSPVASASPLQNWLS VQPTSPAESSRGKCAPNLAHQPSNPVDTHYVPSRNRAQSLTTDNTPLIHKAVSTRTPL TPIPDDVATANSTCAIPWVSWVPLLQSHGFDGTQLQHDPAGSLIIPVQDIRRLAHANY PEEVPASLQDTLNAIKRFPVTIKIDHQRASSYASDIKNCRTGKLLTQMDLKWKSSFAY KMQHEDKQVAGTVIHGCGGSGKSHAIQKWMRTLPADQSTVTVITPTVILRNDWGTKLP ILPSETFKTFEKGIIQPCNPVVIFDDYTKLPPGSIEATVMHHSNISYIVLTGDSRQSV YHELNAEAYIATLPEAVDVFTPFCEFYLNATHRNVQALANKLGVYSERQGRLKVNFAS HHLKASRTPLLVPSTMKRNAMADMGHHGMTYAGCQGLTAPKIQILLDNHTQFCSDRVL YTCLSRAVDSIHFINTGPTTGDYWTKLESTPYLKAFIDTYRDEKTELYNAEPASDAPV EPEAPCTHFPPAPKPLLEPLVSELSAKEDREIFSKSAGYSDTIQTEDPEVQLFQHQQA KDETLYWATIDARLSLATPEDNLLEFNMKRDVGDILFMNYAKVMNLPAEPVQFEERLW EISAAEVRNVYLSKPIGNLVNAASRQSPDFPKHKIALFLKSQWVKKVEKLGALKVKPG QTIASFMQETVMLYGTMARYLRKMRQRFQPPNIFINCERTPDDLDVFVKTHWNFSRPA HTNDFTAFDQSQDGAMLQFEVMKAKFFNVPSEIIEGYIYIKLNAAIFLGTLGIMRLSG EGPTFDANTECSIAYNATRFHIDSGTAQVYAGDDMALDRICPEKSSFHRLENQLKLTS KPMFPRQTTGDYAEFCGWVFTPAGIIKHSLKMYASIQLQKKLNNIKESARSYALDLRY AYKLGDNLQEHLTEEEAAYHQQSVRDMHLLHQAEVLAHGSSSPPHSFSTAEPNRTKTQ KRNATKRKSKVRIAEILPPDY" /product="RNA polymerase" gene 5008..5751 /locus_tag="SvXgp2" /db_xref="GeneID:20531194" CDS 5008..5751 /locus_tag="SvXgp2" /function="cell to cell movement" /protein_id="NP_570727.1" /db_xref="GOA:Q8QXK8" /db_xref="InterPro:IPR000606" /db_xref="UniProtKB/TrEMBL:Q8QXK8" /db_xref="GeneID:20531194" /codon_start=1 /product="triple gene block protein 1" /translation="MEVSYIVELLDFLGFTRSRRPFSLPLVVHGVAGSGKTYLLRKVS SHFPHLVHCSFAPQIIDSNSGRKQAPVTSEPTDLLDEYLGGPNPLVRLLKVCDPLQYD CPEPEVPHYVSLTTRRFCPLTTTLLNSLFGCDIVSLVDRNCHIQIHDPYTDDPIGTVV SLSPDIGALLLRHGCATTPIADLWDVNLSVVSCYLHSLEEALTHYRAPLFLTLTRHTA ELHIFLFDARTDAAHELRNRLQDFGHRSS" gene 5684..6043 /locus_tag="SvXgp3" /db_xref="GeneID:20531193" CDS 5684..6043 /locus_tag="SvXgp3" /function="cell to cell movement" /protein_id="NP_570728.1" /db_xref="InterPro:IPR001896" /db_xref="UniProtKB/TrEMBL:Q8QXK7" /db_xref="GeneID:20531193" /codon_start=1 /product="triple gene block protein 2" /translation="MPGLTPPTNYETVFKILAIGALSCLSIYALRANQLPHTGDNIHH LPHGGNYADGTKRIQYFRPGGNLHDHSKFTAGCVVFFLTLLILVQSQWPSRTIRSSVH VCTHCPQTPTLSGDHHR" gene 5886..6137 /locus_tag="SvXgp4" /db_xref="GeneID:20531192" CDS 5886..6137 /locus_tag="SvXgp4" /function="cell to cell movement" /protein_id="NP_570729.1" /db_xref="InterPro:IPR003411" /db_xref="UniProtKB/TrEMBL:Q8QXK6" /db_xref="GeneID:20531192" /codon_start=1 /product="triple gene block protein 3" /translation="MTTPNSQQGVSSSSSLSSFWFSLNGLLVLSGVLFMFALIAPKPQ PCLVIITGEAVRISGCADPSLILAHINLAPWNGVKFPIS" gene 6186..6878 /locus_tag="SvXgp5" /db_xref="GeneID:20531191" CDS 6186..6878 /locus_tag="SvXgp5" /function="encapsidation" /protein_id="NP_570730.1" /db_xref="GOA:Q8QXK5" /db_xref="InterPro:IPR000052" /db_xref="UniProtKB/TrEMBL:Q8QXK5" /db_xref="GeneID:20531191" /codon_start=1 /product="coat protein" /translation="MDKLDAGQPQRKQAEPVPADLSDPTRAPSLKELQAVKYVSTTTS VATPDEIKQLGELFQKLGVDGSSIGPAMWDLARAYADVQSSRSAMLAGTTPSNPAITR QALARQFYIVNITPRQFCMYFAKVVWNMMIDSNVPPAGWVKHGLPEDCKFAGFVFFEG VLSPSSLDPADGLIRHPSQREIQAHSTAKYGALARQRIQNGNFVSNLAEVTHGRAGGV NSMYAIEAPPEL" 3'UTR 6879..6985 ORIGIN 1 ggaaaacaaa acaacacaga aacactcgca acttaactgc ccatataagg agaataaccg 61 caccccgcac tataatccca tatggccaga gtacgagcgt cgttggagaa gatccgggac 121 ccatctgtac aaacagctat ctctgaagct gcttacgcac atgtacgccc tgttctaaaa 181 gaagccctcg ttaattgccc ctatgctctc aatgatgccg aagcggactg ccttgaaaac 241 ttcggtatta ctgtaaatcc gtacgccacc caaactcaca cacacgccgc ttgtaaagcg 301 atagagaata ggatgttaga aatagtaggt aaacatctcc caaaagaacg ctgcacaatg 361 cttttcctga aacgcagcaa gctaagatac cttagacgtg ccgcagcctt gaaagatgac 421 ttcatcaacc aggacattga acctaaggac ctttttcgtt acgatcggga tactatacga 481 acccgcctta aggatattac taccccaata gcctatatgt ccgacaccct acacttcatg 541 tcccacacgg agttgatgtt gcttttcgct gattctccgc cactccagac catgttggcc 601 actttagtct tgccgatcga ggctatgcat cgccgcacca cgctataccc cgccctctac 661 agcatcaact acgggcccaa aggatttgag tacataccag gtaatcatgg gggaggtgcc 721 tacttccacc cctacgacac cctagactgg cttaaagtgc gccaactccg gggggaagac 781 catcacggaa ttgaccccac tattacactc actttccagc tggtggaaag cctgggcgct 841 aaccatctct ttatcatcca acgaggcgac ctccggactc cgctggtacg cacattctgt 901 agagacacac tggtcaccat gcccaaaatc ttttgccccg actccatgaa tgccaaccgt 961 cccctcacca agacaaaagc catgcagatg ctgatgtatt gcaaatctgt caagcaagta 1021 agtgaacggg acatctacgc aaagttccga caaatgatct ccacccctga actggagctt 1081 tacgagcccg acgagatggt gcacctctgt aactactttc acttcgtagc tcatttggac 1141 tcaatcactt gctacgacga cctcctaggc aattctttat gggcgacgcc tcaccatccc 1201 cgtacgcacc aaagtcaccc aattttagac ttcttccgtg gacagaacaa tttcagtaag 1261 ctgctggctg cacttaaatg ggaacccttt tcctattccc tggagcctaa cgacttcacc 1321 gtgtcatacg acggccattc cgctcgcgcc cttgccgaca ggactggact gtctctcacc 1381 gtcgctgccg caaccatcaa agacagtcgg gccgacccca cactcttcac cgaggctgac 1441 ctagaagata ctccttttga ggactttcta ggccgtctaa cttaccccat tccaaccaac 1501 caggaggggt caccgcgtga cacggagcca gaaagcccat ctattagcgg cgccacacaa 1561 gtcttccatt tcaacacctc agcgcaggct ttaaccagct ccccagagtc cccccaggca 1621 caagagtggc ctgaagttca ccacagcagc tggttggccg ctactttcca tcacatgctc 1681 ggtgaattgc cattcgcaca aactgtaggc agacgcacct acctcttcgc ctcaccgccc 1741 gtgctcttct ctgacccaga cctcacccac cacaccaatt tagcctggca acccattctc 1801 tccgatgtgg ttgattcctt gggcattagc gccaccgcct gcttcataca ggtgtacgac 1861 gaaggcctca accaaccatg gcgctgcaac tacggaagaa aacccgagtc cgatgtcatc 1921 tcgaccttaa ctttaggcca ggccgagctc gagttagctg gtgggaaacg cctcagcttg 1981 aaagaaggtg actggttcac catcaacggc cctttactcc agcggggtca ccatatctca 2041 gtgggctcgc cacaatgcat cacactcact ttctggctgc acatgagccc cgtggcaagc 2101 gcatcaccac tccagaactg gctttccgtc caacccacct cgccggcaga aagctcacgg 2161 ggaaagtgtg ctcccaactt ggcacaccag ccctccaatc ctgttgacac ccactatgtc 2221 ccgagccgca accgagctca aagtcttaca accgacaaca cgccgctcat acacaaggct 2281 gtcagcactc gcaccccact cacgccaatc ccagacgacg tggccactgc taattccacg 2341 tgtgccatac catgggtcag ttgggtgccc ctcctccaga gccacggttt cgatggcaca 2401 caactccagc acgaccccgc cggcagttta atcatccccg tccaagacat tcggcggctt 2461 gcccatgcta attaccccga agaggtgccc gctagcttgc aggacacttt gaatgccatc 2521 aagcgcttcc ccgtgacgat taaaattgac caccaacgag ccagctcata cgcctccgac 2581 atcaaaaatt gtagaactgg caagttgctt acccagatgg acctcaaatg gaagtcttcc 2641 ttcgcttaca agatgcagca cgaggataag caggtagccg gcactgtcat tcatgggtgc 2701 ggcggctctg gcaaatctca cgccatccaa aagtggatgc gcactctccc cgcggatcag 2761 agcacggtca cggtcatcac ccccacagtc atcctccgga acgactgggg caccaaactg 2821 cccatcttgc ccagcgaaac ctttaaaacc tttgagaagg gcatcatcca gccttgcaac 2881 ccagttgtga tcttcgacga ctataccaaa ctgccccccg gatccataga agccacggtc 2941 atgcaccata gcaacatatc ctacatagtg ctcactggag acagccggca gtctgtgtac 3001 cacgaactca acgccgaagc ttacatcgcc acgctgcctg aagctgtcga tgtcttcacc 3061 ccgttttgcg aattctacct caatgccacc caccgcaacg tccaagcttt ggccaacaag 3121 ctgggggttt attcagagcg ccaaggtaga cttaaagtca atttcgcctc ccaccacctc 3181 aaggcctcca ggacgcctct gctagtgccc tccaccatga agcggaatgc catggcggac 3241 atgggccacc acggtatgac atatgccgga tgccaaggac tcacggcccc aaaaatccaa 3301 attcttctgg acaatcacac tcaattctgc tccgaccggg tgctctatac ctgcctctct 3361 cgcgcggttg actccatcca cttcataaac actgggccca ccacggggga ctattggacc 3421 aagcttgaga gcactccata cttgaaagct ttcattgaca cctacaggga cgagaagacg 3481 gagctttaca atgccgaacc agcatctgac gcccccgtcg aacccgaagc cccttgcacc 3541 cacttcccac cagcgcccaa accgttactc gagcccctcg tttccgagtt atctgccaaa 3601 gaggataggg agatcttctc taagtccgcc ggctactccg acaccatcca gacggaagac 3661 cccgaggtcc aattatttca gcaccaacaa gccaaagacg agactttata ttgggccacc 3721 atcgacgctc ggctttcact tgccaccccc gaggataatc tactcgaatt taacatgaag 3781 agagatgtgg gcgacatcct ctttatgaac tacgctaaag tcatgaacct ccccgctgaa 3841 cctgtccaat tcgaggagcg attgtgggaa atctccgctg ctgaggtgcg caatgtctac 3901 cttagcaaac ccatcggcaa tcttgtcaat gctgcctccc gtcagtctcc cgactttcca 3961 aagcataaaa tagccctctt tctgaaatct cagtgggtta agaaagtaga aaagctgggt 4021 gcacttaaag tcaagccagg gcaaaccata gcttctttca tgcaggaaac cgttatgttg 4081 tatggcacga tggcccgata cttgcgtaag atgcgtcagc gcttccagcc accgaacatt 4141 ttcatcaact gcgagcggac gccagacgac ctagacgtct ttgtcaagac ccattggaac 4201 ttctcccgcc ccgcccacac caatgacttc accgcgttcg accaatctca agacggcgcc 4261 atgctacagt ttgaagttat gaaagctaag ttctttaacg tgccctccga aatcatcgaa 4321 ggctacattt acatcaaact gaacgctgcc attttcctag gcactcttgg cataatgcga 4381 ctttccggag aggggcctac ttttgatgcc aatactgaat gctcaatcgc ctacaacgcc 4441 actcgcttcc acattgacag tggaactgcc caggtttacg ccggcgacga catggccctc 4501 gaccgcatct gcccggagaa atctagcttc cacagactgg aaaaccagct caaacttact 4561 tccaagccta tgtttccgcg gcaaacaacc ggtgattacg cagaattctg tggctgggtg 4621 ttcactcccg ccgggattat caaacattca ctcaagatgt acgcctctat ccagcttcag 4681 aagaaattga ataatattaa ggaaagtgct cgctcttatg cgctggacct ccggtatgcc 4741 tacaaattgg gcgataatct ccaggagcat ctaaccgagg aggaagccgc gtaccatcaa 4801 caatccgtgc gggacatgca tttgctgcac caggccgaag ttctcgcaca tggctcgtct 4861 agtccgccgc actcattttc aacggccgag cctaaccgta caaagaccca aaagcgtaat 4921 gccaccaagc ggaaatccaa agtgcgaatt gccgaaattc tacccccgga ctactaacgg 4981 ggttaagtaa ccttttagta tttcgatatg gaagttagtt atattgtaga acttttagat 5041 tttcttggtt tcacccgttc cagacgtccc ttttcccttc ccctggtagt acacggcgtc 5101 gcaggctccg gcaaaaccta cctccttcgc aaagtcagtt cacactttcc ccacctggtc 5161 cactgcagtt tcgcccccca aatcatagac tcaaattcag gtcgcaaaca ggcgcccgtc 5221 acttcagaac ctacggacct ccttgacgaa tatttgggcg gccccaatcc cttggtacgg 5281 ctgttgaaag tttgcgatcc gctccagtac gactgccccg agcctgaagt accacattac 5341 gtctcactca ccaccaggcg gttttgccca ttaactacga ccctgcttaa ctccctgttt 5401 gggtgcgaca tagtttctct cgtcgatcgc aactgtcata tacaaattca cgacccctac 5461 acagacgacc caattggaac cgtcgtctcc ctctcccccg acattggtgc gttactcctc 5521 cgtcacggct gcgcaacaac gcccatcgcc gacttgtggg atgtcaatct cagtgttgtc 5581 tcctgctact tgcactccct agaagaggcc ctcacccact accgggcccc tttgtttctg 5641 actcttacac gacacacagc tgaactgcac atcttccttt tcgatgcccg gactgacgcc 5701 gcccacgaac tacgaaaccg tcttcaagat tttggccata ggagctctta gttgtctctc 5761 catctacgca ctccgtgcca atcaactacc tcacacgggt gacaatattc accacctacc 5821 ccacggcggc aactacgcag acggtaccaa gaggatccaa tacttccgac ccggcggcaa 5881 cctacatgac cactccaaat tcacagcagg gtgtgtcgtc ttcttcctca ctctcctcat 5941 tttggttcag tctcaatggc cttctcgtac tatccggagt tctgttcatg tttgcactca 6001 ttgcccccaa accccaaccc tgtctggtga tcatcaccgg tgaggcagtg cgcatctctg 6061 gctgcgcaga cccaagcctt atcttagccc acatcaacct cgcaccctgg aacggggtta 6121 agtttcctat ttcctagttt gaaaatttta tttagtttag tattgaacgt ttcgggttaa 6181 ccctcatgga caaattagac gctggacaac ctcagcgcaa gcaagcagaa cctgtccccg 6241 ccgacctttc cgatcccacc cgcgctccct cactcaaaga gctgcaggct gtcaaatacg 6301 tgtcaaccac cacctcagtc gctacgccgg acgaaatcaa acaactcggc gaactcttcc 6361 agaagctcgg tgtagacggt tcttccatag gcccagcaat gtgggatctt gcacgtgctt 6421 acgccgatgt acaatctagt cgctctgcga tgctggctgg caccacccca tctaaccccg 6481 ccataactcg ccaggccctt gcacgccaat tttacatagt caacatcact ccacggcagt 6541 tctgcatgta cttcgcaaag gtagtttgga atatgatgat cgactcaaac gtgccccccg 6601 ctggttgggt aaaacatggg ctccccgaag attgcaagtt cgccggcttc gtcttctttg 6661 aaggcgtgct ttcaccttca tcgctcgacc ccgccgacgg cttgatccgt cacccctccc 6721 agcgtgagat ccaggcacat tcaaccgcca aatacggagc ccttgcgcgc cagcggatcc 6781 aaaatggaaa cttcgtgtca aacttggccg aggtcaccca cggacgcgct ggcggagtca 6841 actctatgta cgccattgag gccccccccg aactataata gcattaggca acttaaatta 6901 atgcgtggtt ttctacagtt tattttccac atcagactct ccatcctact agctttatcc 6961 gcatgtatga atgtaagttt gtttt //